rna3669, rna3669 (mRNA) Nannochloropsis gaditana

Overview
Namerna3669
Unique Namerna3669
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1360
Alignment locationCM002461.1:925040..927039 +

Link to JBrowse

Properties
Property NameValue
Productdna topoisomerase iii
Orig transcript idgnl|cribi|Naga_100079g1.10192.mrna
Orig protein idgnl|cribi|Naga_100079g1.10192
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:925040..927039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100079g1gene3534Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3669rna3669-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27003.1cds3660Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3669 ID=rna3669|Name=rna3669|organism=Nannochloropsis gaditana|type=mRNA|length=1360bp
CTAACAGGCAAAGAGGAAAGGGCCAATGAACTGCATATTTCAATCTTCTC
TACTGCTGTAACGTGTGCTAGTGATGACTTAGCTTGCGCATCACCTGCCT
TGCATTTTCCGCGGCCATCTATCGTGTTCTACCTCCTCTCTACTTCCCTC
CTCCCTCACCTCGTCCCATCCGCCGACGGTTTGAACTTCATCGGACCGAC
GTGCGAAGGGCCTGATTGTAATCTGCTATTCGCTTCTTCGAATTGGTTCC
CCGTGCAAATACATGGCACCCGTCAAGGTCTTGAATGTGGCCGAAAAACC
TAGCGTGGCGAAAGAAATCTCTGCCATACTCTCTGGCGGCAACCGTGCCC
CACGTCGTCGCCAAGGGGGATCTGACTACAATCCAATATGGGAATTCGGC
TGTCAAATACGTGGAGAGCTTGTGGATATGGTGTTTACCTCGGTCCGAGG
CCACCTCTTGGAGATGGAATTCGTGGAACCCTACTGCAAGAATTGGCATG
CCTGTCGCCCGGGGGACCTGTTCACGATCCCCGTGGAGAAAAAAGTGGGC
AAGGACAAAGAGAGTTTGGAAAGATGCTTGAAATCCGAAGCAAGGGTGTG
CCAGCGGCTGATCTTGTGGCTGGACTGCGATTTGGAAGGGGAAAACATTG
CCTTTGAGGTGATGGACGTGTGTCGGGCCGCGAACTCGCGTTTGCGGGTG
GAACGTGCCCGTTTCTCCGCTCTCATTCCCCGAGAAATCTGGCACGCCCT
CGAACACCTCGTGGAACCCAATGTGTACCAATCGGAAGCCGTCAATGCCC
GGATGGAAATCGATTTACGGATCGGTGCTGCTTTCACCCGCTTCCAGACC
CTGAAACTCCAAGGGAAGTTCGACGGGGTCGAGGACTCTATCATTTCGTA
TGGTCCCTGCCAATTTCCCACGATGGGTTTTGTGGTCGATCGGTACAAAG
CGATCGAGTCGTTCCAGAGGGAGGAGTTTTGGCGGATCCAAATGGCGTAC
CGGGGGGGGCGTGAAGACGGGGACGGGGGCCCACAGGGAATCACCCGCTT
TCAATGGAAGCGGGAGAGGTTGTTCGACGAGGCGGCTTGTGCGGTTTTGT
ACGTGATGGTGGTGGAAGCCAAAGAGGCGCGGGTCACACACGTGAATGCC
GCGCCGGCCACCCGCGATCGACCGCTGCCCTTGTCGACCGTTGAGCTGCA
GAAGAAAGCGTCCAGGTTGGGGCAGGGAGGGAGGAAGGGCGGGCGGGGCA
AGGGGATAGGAAAGAAAGGAGAGTGGGAGGAGAGACGATGGAGGCGTATG
AGGGGGGCTTCATCAGGAACCTGGGGAAGAGCTAATTTTGGAGCGCGGTA
CATAAGTTAA
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protein sequence of rna3669

>rna3669-protein ID=rna3669-protein|Name=rna3669|organism=Nannochloropsis gaditana|type=polypeptide|length=483bp
MDLRRDKSVLFLACETCAASHLLPHSRKGTSRPSTLTPPVLCPLCGFEAL
LVTPEGGGREGGGGDERVPPPYHMCPWCYHHPPASGTAMDNFRCANCTGV
LDRGLEGREKDGGGGVRGPCPLARAVLDADKAVLSCRGCKGQHSMTLRKN
ERGLMLGCQGFPACKGTIYFWGAVREVRVLDNRFCEECRKGGGGRGGVQK
GQVALLQFQFYQRKVPPGTPEVYTACILCDPLLREHCRYRFSPETPASSA
CKGRGIEGRRGRGSVGAGAMEAAPFQPLPPPPFRSAVGEGAPGGAWRRRD
ENRPPILPLSPSSPMNGGGEKEGPWARKRARESDQGKGTRGMGGGGHAPS
CHCGQAAKVLIVRKEGPNMGKEFYGCEIGQRAQGGCGFFQWADDVGGGGS
EVPPPGRGAPDMGWNGTRTGNRDEGNGKNITGGGWKRSSTSSLAEGGWQS
ASRGGGRGAGRGRRGRGGASGGKKAKVSHEMDW
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mRNA from alignment at CM002461.1:925040..927039+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3669 ID=rna3669|Name=rna3669|organism=Nannochloropsis gaditana|type=mRNA|length=2000bp|location=Sequence derived from alignment at CM002461.1:925040..927039+ (Nannochloropsis gaditana)
GGTTTTCAGCCGACCAATCTGGGGTTGGGGTTAGTGGAGGGCTACGAAGA
GATAGGATACCAGTTGACCAAGCCAGAGCTGCGGGcagagatggaaaggg
agtgtAAACGGGTGGCCCGtggggagcggggaaggacagagATGGTCCAA
GCCTGCTTGTTGAAAATGAAGGAGTGCTTTGAGGACTGTCAGAACCAGTG
GGAACGCTTGCcggaggccgtgggcaaGTACCTTCGACGATATGGTCAGG
GGGTTGatagggcaggaggggggggggagggaccatTCGGACGGTGGAAG
CCGGCTTTTCTCAGTGCGGACACTgccaagggaggatggaTCTCCGTAGG
GACAAGAGCGTGCTTTTCCTTGCCTGTGAGACCTGCGCCGCCTCGCATTT
GCTACCCCACAGCAGGAAGGGAACCAGCAGACCTTCTACATTGACACCCC
CAGTCTTGTGCCCTTTGTGTGGTTTTGAGGCGCTTCTGGTTACGccagaa
gggggagggagagagggaggtgggggggacgAAAGAGTCCCACCTCCGTA
CCACATGTGTCCCTGGTGCTACCACCACCCCCCGGCCTCGGGGACGGCGA
TGGACAATTTTAGGTGTGCGAACTGCACTGGTGTGCTTGACAGGGgtctg
gaggggagggaaaaagatggcgggggaggagtcaGAGGTCCTTGTCCATT
GGCTCGGGCTGTTTTGGACGCCGACAAAGCCGTGCTCTCCTGTCGTGGGT
GCAAAGGTCAGCATTCAATGACGTTGAGGAAGAATGAGCGGGGCCTGATG
TTGGGTTGCCAGGGCTTCCCTGCCTGCAAAGGGACAATATACTTTTGGGG
TGCTGTCAGGGAGGTTAGGGTCCTGGATAACCGATTCTGCGAGGAATGTC
gtaaggggggaggagggaggggaggagtacAGAAAGGGCAAGTCGCCCTG
TTGCAATTCCAATTTTACCAACGGAAAGTTCCTCCCGGGACGCCGGAGGT
CTACACAGCCTGTATCCTCTGTGACCCCCTGCTTCGAGAGCACTGCCGGT
ATCGCTTCTCCCCCGAGACACCGGCCTCTTCCGCCTGCAAAGGGCGTGGG
ATTGAAGGacgcagagggagaggaagtgtcGGGGCTGGGGCCATGGAGGC
TGCTCCGTTtcagccccttcctcctcccccttttcgcTCGGCCGTTGGTG
AGGGCGCCCcaggaggggcatggaggcgcCGGGACGAGAATCGTCCTCCC
atacttcctctctccccatcctcccccatgaatggaggaggggagaagga
gggcccaTGGGCGAGGAAACGTGCTCGGGAAAGCGACCAGGGTAAGGGGA
CGAGAggaatggggggaggggggcatgcgCCCTCCTGCCACTGCGGCCAG
GCAGCCAAGGTCTTGATAGTGCGGAAAGAGGGGCCAAATATGGGTAAGGA
ATTCTATGGGTGTGAGATCGGGCAACGGGCACAAGGAGGATGCGGATTTT
TCCAATGGGCGGATGACGttggaggtgggggaagcgAGGTCCCGCCCCCG
GGGAGGGGTGCCCCGGATATGGGTTGGAATGGGACGAGGACAGGCAACAG
GGATGAAGGTAATGGTAAGAATATaacagggggaggatggaagcggAGTT
CAACAAGCAGTCttgcggagggaggttggcAAAGCGCTAGTCGCGGTGGT
GGTCGGGGGGCAGGACGCGGAcgtagagggagaggtggagcgtcgggagg
aaagaaagccaaaGTCAGCCATGAAATGGACTGGTAGGGACATGACAATG
GATATGACGTGTATAGCAAGGGGTTTGGCGGTACGTGCGAAGAAAGTATA
GGAAAAATGTCGTGTCATGAAGACGCGCGGCCCATATAAGAGGAGGTCAA
CAAATGCAGGACAGCACAACACGAAGGACCAAAGTAGCCGTTGCCAGTAA
GGAAGTCCGACAATGCCAAAGTAAGATGCAATAAAATGAGGTGTAACAAA
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Coding sequence (CDS) from alignment at CM002461.1:925040..927039+

>rna3669 ID=rna3669|Name=rna3669|organism=Nannochloropsis gaditana|type=CDS|length=1452bp|location=Sequence derived from alignment at CM002461.1:925040..927039+ (Nannochloropsis gaditana)
atggaTCTCCGTAGGGACAAGAGCGTGCTTTTCCTTGCCTGTGAGACCTG
CGCCGCCTCGCATTTGCTACCCCACAGCAGGAAGGGAACCAGCAGACCTT
CTACATTGACACCCCCAGTCTTGTGCCCTTTGTGTGGTTTTGAGGCGCTT
CTGGTTACGccagaagggggagggagagagggaggtgggggggacgAAAG
AGTCCCACCTCCGTACCACATGTGTCCCTGGTGCTACCACCACCCCCCGG
CCTCGGGGACGGCGATGGACAATTTTAGGTGTGCGAACTGCACTGGTGTG
CTTGACAGGGgtctggaggggagggaaaaagatggcgggggaggagtcaG
AGGTCCTTGTCCATTGGCTCGGGCTGTTTTGGACGCCGACAAAGCCGTGC
TCTCCTGTCGTGGGTGCAAAGGTCAGCATTCAATGACGTTGAGGAAGAAT
GAGCGGGGCCTGATGTTGGGTTGCCAGGGCTTCCCTGCCTGCAAAGGGAC
AATATACTTTTGGGGTGCTGTCAGGGAGGTTAGGGTCCTGGATAACCGAT
TCTGCGAGGAATGTCgtaaggggggaggagggaggggaggagtacAGAAA
GGGCAAGTCGCCCTGTTGCAATTCCAATTTTACCAACGGAAAGTTCCTCC
CGGGACGCCGGAGGTCTACACAGCCTGTATCCTCTGTGACCCCCTGCTTC
GAGAGCACTGCCGGTATCGCTTCTCCCCCGAGACACCGGCCTCTTCCGCC
TGCAAAGGGCGTGGGATTGAAGGacgcagagggagaggaagtgtcGGGGC
TGGGGCCATGGAGGCTGCTCCGTTtcagccccttcctcctcccccttttc
gcTCGGCCGTTGGTGAGGGCGCCCcaggaggggcatggaggcgcCGGGAC
GAGAATCGTCCTCCCatacttcctctctccccatcctcccccatgaatgg
aggaggggagaaggagggcccaTGGGCGAGGAAACGTGCTCGGGAAAGCG
ACCAGGGTAAGGGGACGAGAggaatggggggaggggggcatgcgCCCTCC
TGCCACTGCGGCCAGGCAGCCAAGGTCTTGATAGTGCGGAAAGAGGGGCC
AAATATGGGTAAGGAATTCTATGGGTGTGAGATCGGGCAACGGGCACAAG
GAGGATGCGGATTTTTCCAATGGGCGGATGACGttggaggtgggggaagc
gAGGTCCCGCCCCCGGGGAGGGGTGCCCCGGATATGGGTTGGAATGGGAC
GAGGACAGGCAACAGGGATGAAGGTAATGGTAAGAATATaacagggggag
gatggaagcggAGTTCAACAAGCAGTCttgcggagggaggttggcAAAGC
GCTAGTCGCGGTGGTGGTCGGGGGGCAGGACGCGGAcgtagagggagagg
tggagcgtcgggaggaaagaaagccaaaGTCAGCCATGAAATGGACTGGT
AG
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Synonyms
Publications