rna3664, rna3664 (mRNA) Nannochloropsis gaditana

Overview
Namerna3664
Unique Namerna3664
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length372
Alignment locationCM002461.1:914624..915181 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100444g5.1596.mrna
Orig protein idgnl|cribi|Naga_100444g5.1596
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:914624..915181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100444g5gene3529Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27016.1cds3655Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3664rna3664-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3664 ID=rna3664|Name=rna3664|organism=Nannochloropsis gaditana|type=mRNA|length=372bp
ATGCTTTATTCTTGCTCCGGCAGACTTATGTCGTCAGTGTTGTATTGGAT
GGAAGAATCGAATGTATGCACAGGCTATGCGTCAGTAAAATATGGATCGA
AAGAGCTTTACGTTAAGAAAAGAGCAATTATACGTCGCTCTAATGTCTCG
TGTACCTTGAGTTGTTGTCATGATCTACATATCGAGCAGGAAATGTTGGA
TAGGCAAGCGACGGTTGAGGAAGCAAGCCGCAAAACTAGTATTTTTGCTA
GAAGAGCCTTGACGAAGCTGCGTTATCACAAGGACGGTGTGTACGCATGT
GAGCCACAGGAGAAGCCAACGAAGAAAAGAAGAAATCGAAACAAAAAGGC
GGTGATGCACTCAGCGTGTTAA
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protein sequence of rna3664

>rna3664-protein ID=rna3664-protein|Name=rna3664|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MTANKFTILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTS
KTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPA
GPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLS
FLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI
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mRNA from alignment at CM002461.1:914624..915181-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3664 ID=rna3664|Name=rna3664|organism=Nannochloropsis gaditana|type=mRNA|length=558bp|location=Sequence derived from alignment at CM002461.1:914624..915181- (Nannochloropsis gaditana)
ATGACCGCAAATAAATTCACAATTTTGTGCGTTTCATTGCTGGTTGTCAT
CAGCAGCATTGAAGCTTTCGTGCCACGTTCTACAAGTCATCGCCTGGTGT
CAAAGAGGCTTCCATCGCCTTCAAAGGCCACATGCCCGAATCCAACGTCG
AAGACTCTACTTTTGGCCAGTAGTGGTGACGATGAAGCCGAGGAGATTGG
GGGAGCGGGTCTTGCGGTAACAGCGCTCGGACTTGTAGCATGTCCTGTTG
TTCTCTACTCGGAATACGTCCTTAAGACGACGGGGTGCGGTCTTCCGGCA
GGACCGGGCGGATCCCTTGGCGCTCTGGAAGGGATTTCCTATCTAGTTGT
CGTCGGTATTGCGGGCTGGTCCATCGTGAAGAAAATCCGGACGGGCACGG
GTCTGCCAGCAGGACCAGCAGGGTTGCTGGGGGCTGTAGAGGGCTTGAGC
TTTCTAGCCATTTTGGTCGGAGCGGTGGTTCTTGGCACCACGATCCAGCA
ATACGGGTCTGTCCCTGAGGCAGTGCCCTTGGAAGGAGGGCGCTGCAGTG
ACATTTGA
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Coding sequence (CDS) from alignment at CM002461.1:914624..915181-

>rna3664 ID=rna3664|Name=rna3664|organism=Nannochloropsis gaditana|type=CDS|length=558bp|location=Sequence derived from alignment at CM002461.1:914624..915181- (Nannochloropsis gaditana)
ATGACCGCAAATAAATTCACAATTTTGTGCGTTTCATTGCTGGTTGTCAT
CAGCAGCATTGAAGCTTTCGTGCCACGTTCTACAAGTCATCGCCTGGTGT
CAAAGAGGCTTCCATCGCCTTCAAAGGCCACATGCCCGAATCCAACGTCG
AAGACTCTACTTTTGGCCAGTAGTGGTGACGATGAAGCCGAGGAGATTGG
GGGAGCGGGTCTTGCGGTAACAGCGCTCGGACTTGTAGCATGTCCTGTTG
TTCTCTACTCGGAATACGTCCTTAAGACGACGGGGTGCGGTCTTCCGGCA
GGACCGGGCGGATCCCTTGGCGCTCTGGAAGGGATTTCCTATCTAGTTGT
CGTCGGTATTGCGGGCTGGTCCATCGTGAAGAAAATCCGGACGGGCACGG
GTCTGCCAGCAGGACCAGCAGGGTTGCTGGGGGCTGTAGAGGGCTTGAGC
TTTCTAGCCATTTTGGTCGGAGCGGTGGTTCTTGGCACCACGATCCAGCA
ATACGGGTCTGTCCCTGAGGCAGTGCCCTTGGAAGGAGGGCGCTGCAGTG
ACATTTGA
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Synonyms
Publications