EWM27016.1, cds3655 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|585109187|gb|EWM27016.1| (hypothetical protein Naga_100444g5 [Nannochloropsis gaditana]) HSP 1 Score: 357.451 bits (916), Expect = 1.517e-124 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query: 1 MTANKFTILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185
MTANKFTILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI
Sbjct: 1 MTANKFTILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|553186519|ref|XP_005854433.1| (hypothetical protein NGA_2002000 [Nannochloropsis gaditana CCMP526] >gi|422294623|gb|EKU21923.1| hypothetical protein NGA_2002000 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 355.14 bits (910), Expect = 1.143e-123 Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0
Query: 1 MTANKFTILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185
MTANKF ILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI
Sbjct: 1 MTANKFIILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|219128329|ref|XP_002184368.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404169|gb|EEC44117.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 133.65 bits (335), Expect = 2.941e-37 Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0
Query: 77 GLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCS 183
G +A + +YSE+ LKTTGCGLPAGP G +GA+EGISYL +VGI +S+V K RTG+GLPAGPAG+LG EGL F AI+ G VVLG + YG +P AVP+EGG CS
Sbjct: 3 GTLAALITIYSEFTLKTTGCGLPAGPFGLVGAVEGISYLAIVGITAYSLVTKFRTGSGLPAGPAGVLGVAEGLCFTAIVTGLVVLGFQVVDYGYIPNAVPMEGGMCS 109
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|976917380|gb|KVI02844.1| (hypothetical protein Ccrd_018878 [Cynara cardunculus var. scolymus]) HSP 1 Score: 130.954 bits (328), Expect = 1.775e-35 Identity = 79/164 (48.17%), Postives = 105/164 (64.02%), Query Frame = 0
Query: 25 PRSTSHRL---VSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLA---VTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRC 182
P STS L +S+ P ++ +C + + L + S EE+ G+A A GL+A PV+ +S Y LKT+GCGLP GP GS+GALEG+SYL VVGI GWS+ K +TG+GLP GP GLLGAVEGLS+L+++ VV G Q GS+P VP+ G +C
Sbjct: 6 PSSTSIPLTPSISRCFPY-NQPSCS--SHRRLNVKSMAKQTGEEVSTNGIAEKLAIAGGLIATPVIGWSLYTLKTSGCGLPPGPAGSIGALEGVSYLAVVGIVGWSLYTKSKTGSGLPNGPFGLLGAVEGLSYLSLVAILVVFGLQFYQQGSLPGPVPVPGDQC 166
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|551556864|ref|XP_005765514.1| (hypothetical protein EMIHUDRAFT_212793 [Emiliania huxleyi CCMP1516] >gi|485615537|gb|EOD13085.1| hypothetical protein EMIHUDRAFT_212793 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 130.568 bits (327), Expect = 6.560e-35 Identity = 67/112 (59.82%), Postives = 82/112 (73.21%), Query Frame = 0
Query: 72 AVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCS 183
A LGL + P++ +S Y LKTTGCGLPAGP G LGA EGISYLVV+G +++ K +G+GLPAGP GLLGA EGLSFL + G VVLG Q YG +PEAVP++GG C+
Sbjct: 76 AAAVLGLCSQPIMWWSLYTLKTTGCGLPAGPFGLLGAAEGISYLVVIGFVAAALLSKATSGSGLPAGPGGLLGAAEGLSFLTAIAGLVVLGFQFQDYGYLPEAVPVQGGICT 187
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|923875400|ref|XP_013710917.1| (PREDICTED: uncharacterized protein LOC106414882 [Brassica napus]) HSP 1 Score: 128.642 bits (322), Expect = 1.113e-34 Identity = 80/163 (49.08%), Postives = 100/163 (61.35%), Query Frame = 0
Query: 14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
++++S I A P T HR R P K +C + + D E G A A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+ KI+TG+GLP GP GLLGAVEGLS+L++L VV G GSVP +P
Sbjct: 1 MLLLSPINASRP-PTFHRGTLIR--QPIKTSC--------RIIAKAKDNTESGGFLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIVGWSLYTKIKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGSVPGPLP 152
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|685314944|ref|XP_009148081.1| (PREDICTED: uncharacterized protein LOC103871569 [Brassica rapa]) HSP 1 Score: 128.642 bits (322), Expect = 1.241e-34 Identity = 79/163 (48.47%), Postives = 101/163 (61.96%), Query Frame = 0
Query: 14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
++++S I A +P T HR + R P K +C + + D E G A A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+ K +TG+GLP GP GLLGAVEGLS+L++L VV G GSVP +P
Sbjct: 1 MLLLSPINASLP-PTFHRGLLFR--QPVKTSC--------RIIAKAKDNTESGGFLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIVGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGSVPGPLP 152
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|922486804|ref|XP_013583771.1| (PREDICTED: uncharacterized protein LOC106292677 [Brassica oleracea var. oleracea]) HSP 1 Score: 127.102 bits (318), Expect = 5.431e-34 Identity = 79/163 (48.47%), Postives = 100/163 (61.35%), Query Frame = 0
Query: 14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
++++S I A +P S HR R P K +C + + D E G A A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+ K +TG+GLP GP GLLGAVEGLS+L++L VV G GSVP +P
Sbjct: 1 MLLLSPINASLPPSF-HRGTLIR--QPIKTSC--------RITAMAKDNTESGGVLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIMGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGSVPGPLP 152
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|923657166|ref|XP_013646465.1| (PREDICTED: uncharacterized protein LOC106351194 [Brassica napus] >gi|674938455|emb|CDX95081.1| BnaC05g05900D [Brassica napus] >gi|674939900|emb|CDX93580.1| BnaA06g04680D [Brassica napus]) HSP 1 Score: 127.102 bits (318), Expect = 5.988e-34 Identity = 79/163 (48.47%), Postives = 99/163 (60.74%), Query Frame = 0
Query: 14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
++++S I A P T HR R P K +C + + D E G A A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+ K +TG+GLP GP GLLGAVEGLS+L++L VV G GSVP +P
Sbjct: 1 MLLLSPINASRP-PTFHRGTLIR--QPIKTSC--------RIIAKAKDNTESGGFLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIVGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGSVPGPLP 152
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|923875395|ref|XP_013710916.1| (PREDICTED: uncharacterized protein LOC106414881 [Brassica napus] >gi|674938454|emb|CDX95080.1| BnaC05g05910D [Brassica napus]) HSP 1 Score: 125.561 bits (314), Expect = 1.851e-33 Identity = 78/163 (47.85%), Postives = 99/163 (60.74%), Query Frame = 0
Query: 14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
++++S I A +P S HR R P K +C + + D E G A A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+ K +TG+GLP GP GLLGAVEGLS+L++L VV G G VP +P
Sbjct: 1 MLLLSPINASLPPSF-HRETLIR--QPIKTSC--------RITAKAKDNTESGGVLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIVGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGLVPGPLP 152 The following BLAST results are available for this feature:
BLAST of EWM27016.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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