EWM27016.1, cds3655 (CDS) Nannochloropsis gaditana

Overview
NameEWM27016.1
Unique Namecds3655
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:914624..915181 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27016.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100444g5.1596.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:914624..915181 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|585109187|gb|EWM27016.1| (hypothetical protein Naga_100444g5 [Nannochloropsis gaditana])

HSP 1 Score: 357.451 bits (916), Expect = 1.517e-124
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query:    1 MTANKFTILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185
            MTANKFTILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI
Sbjct:    1 MTANKFTILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185          
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|553186519|ref|XP_005854433.1| (hypothetical protein NGA_2002000 [Nannochloropsis gaditana CCMP526] >gi|422294623|gb|EKU21923.1| hypothetical protein NGA_2002000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 355.14 bits (910), Expect = 1.143e-123
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0
Query:    1 MTANKFTILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185
            MTANKF ILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI
Sbjct:    1 MTANKFIILCVSLLVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCSDI 185          
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|219128329|ref|XP_002184368.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404169|gb|EEC44117.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 133.65 bits (335), Expect = 2.941e-37
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0
Query:   77 GLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCS 183
            G +A  + +YSE+ LKTTGCGLPAGP G +GA+EGISYL +VGI  +S+V K RTG+GLPAGPAG+LG  EGL F AI+ G VVLG  +  YG +P AVP+EGG CS
Sbjct:    3 GTLAALITIYSEFTLKTTGCGLPAGPFGLVGAVEGISYLAIVGITAYSLVTKFRTGSGLPAGPAGVLGVAEGLCFTAIVTGLVVLGFQVVDYGYIPNAVPMEGGMCS 109          
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|976917380|gb|KVI02844.1| (hypothetical protein Ccrd_018878 [Cynara cardunculus var. scolymus])

HSP 1 Score: 130.954 bits (328), Expect = 1.775e-35
Identity = 79/164 (48.17%), Postives = 105/164 (64.02%), Query Frame = 0
Query:   25 PRSTSHRL---VSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLA---VTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRC 182
            P STS  L   +S+  P  ++ +C   + + L + S      EE+   G+A     A GL+A PV+ +S Y LKT+GCGLP GP GS+GALEG+SYL VVGI GWS+  K +TG+GLP GP GLLGAVEGLS+L+++   VV G    Q GS+P  VP+ G +C
Sbjct:    6 PSSTSIPLTPSISRCFPY-NQPSCS--SHRRLNVKSMAKQTGEEVSTNGIAEKLAIAGGLIATPVIGWSLYTLKTSGCGLPPGPAGSIGALEGVSYLAVVGIVGWSLYTKSKTGSGLPNGPFGLLGAVEGLSYLSLVAILVVFGLQFYQQGSLPGPVPVPGDQC 166          
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|551556864|ref|XP_005765514.1| (hypothetical protein EMIHUDRAFT_212793 [Emiliania huxleyi CCMP1516] >gi|485615537|gb|EOD13085.1| hypothetical protein EMIHUDRAFT_212793 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 130.568 bits (327), Expect = 6.560e-35
Identity = 67/112 (59.82%), Postives = 82/112 (73.21%), Query Frame = 0
Query:   72 AVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVPLEGGRCS 183
            A   LGL + P++ +S Y LKTTGCGLPAGP G LGA EGISYLVV+G    +++ K  +G+GLPAGP GLLGA EGLSFL  + G VVLG   Q YG +PEAVP++GG C+
Sbjct:   76 AAAVLGLCSQPIMWWSLYTLKTTGCGLPAGPFGLLGAAEGISYLVVIGFVAAALLSKATSGSGLPAGPGGLLGAAEGLSFLTAIAGLVVLGFQFQDYGYLPEAVPVQGGICT 187          
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|923875400|ref|XP_013710917.1| (PREDICTED: uncharacterized protein LOC106414882 [Brassica napus])

HSP 1 Score: 128.642 bits (322), Expect = 1.113e-34
Identity = 80/163 (49.08%), Postives = 100/163 (61.35%), Query Frame = 0
Query:   14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
            ++++S I A  P  T HR    R   P K +C         + +   D  E  G    A  A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+  KI+TG+GLP GP GLLGAVEGLS+L++L   VV G      GSVP  +P
Sbjct:    1 MLLLSPINASRP-PTFHRGTLIR--QPIKTSC--------RIIAKAKDNTESGGFLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIVGWSLYTKIKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGSVPGPLP 152          
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|685314944|ref|XP_009148081.1| (PREDICTED: uncharacterized protein LOC103871569 [Brassica rapa])

HSP 1 Score: 128.642 bits (322), Expect = 1.241e-34
Identity = 79/163 (48.47%), Postives = 101/163 (61.96%), Query Frame = 0
Query:   14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
            ++++S I A +P  T HR +  R   P K +C         + +   D  E  G    A  A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+  K +TG+GLP GP GLLGAVEGLS+L++L   VV G      GSVP  +P
Sbjct:    1 MLLLSPINASLP-PTFHRGLLFR--QPVKTSC--------RIIAKAKDNTESGGFLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIVGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGSVPGPLP 152          
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|922486804|ref|XP_013583771.1| (PREDICTED: uncharacterized protein LOC106292677 [Brassica oleracea var. oleracea])

HSP 1 Score: 127.102 bits (318), Expect = 5.431e-34
Identity = 79/163 (48.47%), Postives = 100/163 (61.35%), Query Frame = 0
Query:   14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
            ++++S I A +P S  HR    R   P K +C         + +   D  E  G    A  A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+  K +TG+GLP GP GLLGAVEGLS+L++L   VV G      GSVP  +P
Sbjct:    1 MLLLSPINASLPPSF-HRGTLIR--QPIKTSC--------RITAMAKDNTESGGVLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIMGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGSVPGPLP 152          
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|923657166|ref|XP_013646465.1| (PREDICTED: uncharacterized protein LOC106351194 [Brassica napus] >gi|674938455|emb|CDX95081.1| BnaC05g05900D [Brassica napus] >gi|674939900|emb|CDX93580.1| BnaA06g04680D [Brassica napus])

HSP 1 Score: 127.102 bits (318), Expect = 5.988e-34
Identity = 79/163 (48.47%), Postives = 99/163 (60.74%), Query Frame = 0
Query:   14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
            ++++S I A  P  T HR    R   P K +C         + +   D  E  G    A  A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+  K +TG+GLP GP GLLGAVEGLS+L++L   VV G      GSVP  +P
Sbjct:    1 MLLLSPINASRP-PTFHRGTLIR--QPIKTSC--------RIIAKAKDNTESGGFLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIVGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGSVPGPLP 152          
BLAST of EWM27016.1 vs. NCBI_GenBank
Match: gi|923875395|ref|XP_013710916.1| (PREDICTED: uncharacterized protein LOC106414881 [Brassica napus] >gi|674938454|emb|CDX95080.1| BnaC05g05910D [Brassica napus])

HSP 1 Score: 125.561 bits (314), Expect = 1.851e-33
Identity = 78/163 (47.85%), Postives = 99/163 (60.74%), Query Frame = 0
Query:   14 LVVISSIEAFVPRSTSHRLVSKRLPSPSKATCPNPTSKTLLLASSGDDEAEEIGGAGLAVTALGLVACPVVLYSEYVLKTTGCGLPAGPGGSLGALEGISYLVVVGIAGWSIVKKIRTGTGLPAGPAGLLGAVEGLSFLAILVGAVVLGTTIQQYGSVPEAVP 176
            ++++S I A +P S  HR    R   P K +C         + +   D  E  G    A  A GLV+ PV+ +S Y LKTTGCGLP GP GS+GALEG+SYLVV+GI GWS+  K +TG+GLP GP GLLGAVEGLS+L++L   VV G      G VP  +P
Sbjct:    1 MLLLSPINASLPPSF-HRETLIR--QPIKTSC--------RITAKAKDNTESGGVLENAAIAGGLVSTPVIGWSLYTLKTTGCGLPPGPAGSIGALEGVSYLVVLGIVGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQFLDNGLVPGPLP 152          
The following BLAST results are available for this feature:
BLAST of EWM27016.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109187|gb|EWM27016.1|1.517e-124100.00hypothetical protein Naga_100444g5 [Nannochloropsi... [more]
gi|553186519|ref|XP_005854433.1|1.143e-12399.46hypothetical protein NGA_2002000 [Nannochloropsis ... [more]
gi|219128329|ref|XP_002184368.1|2.941e-3762.62predicted protein, partial [Phaeodactylum tricornu... [more]
gi|976917380|gb|KVI02844.1|1.775e-3548.17hypothetical protein Ccrd_018878 [Cynara carduncul... [more]
gi|551556864|ref|XP_005765514.1|6.560e-3559.82hypothetical protein EMIHUDRAFT_212793 [Emiliania ... [more]
gi|923875400|ref|XP_013710917.1|1.113e-3449.08PREDICTED: uncharacterized protein LOC106414882 [B... [more]
gi|685314944|ref|XP_009148081.1|1.241e-3448.47PREDICTED: uncharacterized protein LOC103871569 [B... [more]
gi|922486804|ref|XP_013583771.1|5.431e-3448.47PREDICTED: uncharacterized protein LOC106292677 [B... [more]
gi|923657166|ref|XP_013646465.1|5.988e-3448.47PREDICTED: uncharacterized protein LOC106351194 [B... [more]
gi|923875395|ref|XP_013710916.1|1.851e-3347.85PREDICTED: uncharacterized protein LOC106414881 [B... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3664rna3664Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications