rna366, rna366 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna366
Unique Name	rna366
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	935
Alignment location	CM002455.1:889103..891656 +

Link to JBrowse

Properties


Property Name	Value
Product	ring u-box domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100003g130.1829.mrna
Orig protein id	gnl\|cribi\|Naga_100003g130.1829
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:889103..891656 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g130	gene353	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna366	rna366-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30312.1	cds366	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:889103..891656+
coding sequence from alignment at CM002455.1:889103..891656+

mRNA sequence

>rna366 ID=rna366|Name=rna366|organism=Nannochloropsis gaditana|type=mRNA|length=935bp
GCGCGTTCTCCCTGGTGGCCGGATTTAGCATGTCGCCGCCTCGCTCTTTC
TTCCCAGCCCTCCCAAACCCCACCGTGCCCCGTCCTTAATCTCCTCCCGG
TCTCAAGCGGATGTTGTCCGGAGCTATCGATGCGTACCGATCATAACTTT
TACACTCCCTGCCCGTCATCGCACCTTCTGCCCTTTATTTCTTCCTACCA
AACCAGTTCAATTCTATTTTTGGGGTGAATCCCCCTTATCCGCTTTCCTC
TTGTCCTTTTAATGCCCTGTCTTTGATCATCTTAGTCATATTCCACCCTC
CGATCGCGCACATGCTACAGCCGCTTGTAAGGAAGATATGAATTTCAATG
GTGATGCAGAAGCTACAGATCCCAGTTCTATCATTCAGACGTTCCAAAAT
CTGCAAGGCGAATGTCAACAAATGACAACCAAGCTGCAAGAACTGGAAAT
GGAATTGAGCGAGCATGAACTGGTCATTCAACAACTAACCCCTTTGGAAC
CATCGCGCAAAGCATATCGGCTATTGGGCGGTGTTCTAATGGAGCGCACG
GTGGGGGAAGTGCTTCCGGTTTTGTCTGAGTTCGCTTCAAAGTTGAGGAC
TTACATTCCTCAATTGGACGTGGCTCTTGCAAAAAAACAGAAGCAAACAC
GTGAATGGCGAGACAAGTACAACATTAGGGCGCAGAGTGCAAAGGAAATT
GAGGCTTTGCAACAAAAAAGCGCAGCTGGTGCACCTGGAGGCGCGACAGA
CTTATCGGCGGGGGGGGTACTGGCATAGGCTGATCGTGAATAAAAAGAAG
AAAGTTAAGTTTATACTTTCTTAATAGCCTCCATTCTGCTTTCTCTTGGT
GTCCTTTTAAATATGCGACCTGAAAGGGAAGCAAATATGCCAGTACATGC
AAACTTCAGTCTCGAGGCCGAAAGAAATTTTCATT

protein sequence of rna366

>rna366-protein ID=rna366-protein|Name=rna366|organism=Nannochloropsis gaditana|type=polypeptide|length=379bp
MGLAHSSKRAHIMKELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFP
GMEDKGCGTEECPICFLRYVILNCTRCCNHPLCTECYLQLQAPKDLPSSC
PYCNHPKLQILYGTDDEEKMMAQEFANIRLYDLLSMTTQPVPTAAFSSGK
AKIEGRTAWVGGEQAGLHPGSARPLSFVAASGSGRCADVAVRNKERGTSN
DTRRNCHVSASRSTTTAIYSSATYKQPVSLATVKERHNVEEEAKKQHLIP
SQEARNESMAATVGEIFSFRGTGCRSISTGRSIAVGRVEHGIGSGQHAND
HFVMRRRVLEPVGIPAHLQHVEDLMLMEAIQRSLEDATRRLEHCRAEDGN
EMYGNQRQLSSIQDVKGSIDGDDGCEDSS

mRNA from alignment at CM002455.1:889103..891656+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna366 ID=rna366|Name=rna366|organism=Nannochloropsis gaditana|type=mRNA|length=2554bp|location=Sequence derived from alignment at CM002455.1:889103..891656+ (Nannochloropsis gaditana)
AGCAACTTCGGGTTTTCATGGACGTTTGTGAAGCGGGTGTTTGTGAAGAG
CTCGCGAACTTGCAAGCACGACCAGACGAGAGTGAAGTGCGCCGTTTCTT
CCTACTGCCGCCTCGCTCTCAAATTGTTGCCCCCTGcgcatctccttcct
tgttTGCTGTCTGTTACAAGTACTGTGCCTACATACTCTGACATGCCACT
GTCCGGAAGGACTGCAATGTGAAGTCCGGCAATTATTGGCCGCGTTTTCA
CTCTCATCGGGTGTTGGTATAGCGTTTCGAAGGCGAGAAAAATGATGGGA
CCACCTGGTCACCGAACGCGTCTCATGGAGGGTTTTTGATGTCACCTTCA
CAACCAATTTATTACGCAGTAAGGGAGCCAGCCTGATTCAAAGGGCTTGG
GCGGTCCTCACGCTCAAACTTCTGCACGGTGATAGTCATTATGGGGCTTG
CACATTCCAGCAAGCGTGCGCACATTATGAAGGAATTGGAAAGGTACGCC
CGTGCACTTAACCAGACCAACACACTCACACAATCATTCTGGCAAAAAAA
GGCAGCTACTCTCACTAGGCGCAATTGTTGCGGCCTTCTCTGTGCCCTGC
ACAGTTTAATGCTAAGCTTCTTATCAGGACAGAATTCTTTGGGTCGTGTG
ATGTTATTTGTCATTCATGTTCAGCATTGGAGGACAgggcttttttcttc
tttaaTACGGGCTTTAGGTGATTGATACTTTACACgcatggaaaaggaga
agattTTTCACAATTTCTGATAGTCACCTTATCAATGTCACGAAAGGCTT
GTGGAACCATTTTTAACTTCAGCGGAAATATTTCTTCTCACATTTCCGCA
CTAAAATGTTATCGCACACATTGTCAGATTTTCCAAGCCCTGTGGACTTT
ATCCATCGTGCACGTGGGAAGATCGGACTGTCCGTAAACTCATTTTGGAG
GGACGTATTGCTCCATGCTTTCCTGGAATGGAGGACAAAGGATGTGGCAC
CGAGGAATGTCCCATCTGTTTCTTACGTTACGTTATCCTCAATTGCACTC
GTTGCTGCAATCATCCACTTTGCACGGAGTGCTACCTTCAGCTACAGGCG
CCAAAGGACTTGCCGAGTTCATGTCCATATTGCAACCATCCGAAGCTCCA
AATTCTTTACGGCAcggatgacgaggaaaagatgatGGCACAGGAGTTTG
CCAACATTCGTCTGTACGACTTGTTATCAATGACGACACAACCCGTCCCT
ACGGCCGCTTTTTCTTCGGGTAAGGCTAAAATTGAGGGGCGTACAGCttg
ggtgggaggagagcaagcagGCCTTCACCCAGGTAGTGCGAGACCTCTCT
CTTTCGTTGCGGCCTCTGGGAGCGGCAGGTGTGCCGATGTGGCTGTAAGA
AacaaagagagagggacTAGCAACGATACCCGCAGAAATTGTCATGTATC
AGCTTCTAGGAGTACCACGACCGCAATTTACAGCTCCGCCACTTATAAGC
AGCCGGTCTCTCTTGCGACTGTCAAAGAGCGGCATAACGTCGAAGAAGAG
GCAAAAAAACAGCATCTGATTCCATCTCAAGAAGCAAGAAATGAGAGTAT
GGCTGCAACGGTTGGCGAAATTTTCTCTTTTCGTGGCACAGGCTGCCGTA
GCATTTCTACCGGTCGGAGTATAGCAGTGGGCCGGGTAGAGCACGGCATC
GGATCCGGACAACATGCGAACGATCATTTTGTCATGCGAAGAAGGGTTTT
GGAACCAGTGGGCATCCCAGCTCACTTACAGCATGTGGAGGATCTAATGC
TCATGGAGGCCATCCAGCGTTCCCTGGAGGATGCTACCCGAAGACTAGAG
CACTGTAGGGCGGAAGATGGCAACGAGATGTACGGTAACCAGCGGCAACT
GAGTAGCATACAGGATGTAAAAGGATCGATAGACGGGGATGATGGTTGTG
AAGACAGTTCTTAGTGGAGGGGCTCCGAAGAAAGACATGGGGCTGATGAC
AGCCACGCACGGTGTTGCATTAAGCCTAAGAAGCATCCGGGCGCATCAGT
TCGCCAGGCGTAGCATCAATAAAAGTTTCTGCCTGTTGCATTTGGCATGA
CATGGCCGTAGCAAGATGTGCGTCGAAAATTGCGTGTAGATAATTTTTGT
ATCTCCTTTTAAAAATGTACAAAAATATTGGTGGCAAGGATACAGACGTG
TATACAGAGGATGTCAGATATTTTAtcgagggaaaggacaaggTTGCGAT
ACATAATAGCGCACAAAGCGTGGAACAAGGAAATTTTGTGGATTCAAAGA
TGGGAATTGTCAAGCATTCTTTGTATCATTCGCGTTGTGAGTCTGTTGCC
CTGAGCAGTGAATGTGTCGTTTCTAGGAGTGGTTAATGGGTAAGAATGCG
AAAATGGTAATGGGTACGAAAGCGAACAAAGTCGCAATTCAAAACTAGCC
GAGTAAAAGCACTTTAAGTCGCCCATATCTGTGCACTTTCAAGACTAAGA
GGATACCAACAGGAATAAAGCTGGAATATGAGCACTACTTCATAGTAGGT
TTTT

Coding sequence (CDS) from alignment at CM002455.1:889103..891656+

>rna366 ID=rna366|Name=rna366|organism=Nannochloropsis gaditana|type=CDS|length=2280bp|location=Sequence derived from alignment at CM002455.1:889103..891656+ (Nannochloropsis gaditana)
ATGGGGCTTGCACATTCCAGCAAGCGTGCGCACATTATGAAGGAATTGGA
AAGATTTTCCAAGCCCTGTGGACTTTATCCATCGTGCACGTGGGAAGATC
GGACTGTCCGTAAACTCATTTTGGAGGGACGTATTGCTCCATGCTTTCCT
GGAATGGAGGACAAAGGATGTGGCACCGAGGAATGTCCCATCTGTTTCTT
ACGTTACGTTATCCTCAATTGCACTCGTTGCTGCAATCATCCACTTTGCA
CGGAGTGCTACCTTCAGCTACAGGCGCCAAAGGACTTGCCGAGTTCATGT
CCATATTGCAACCATCCGAAGCTCCAAATTCTTTACGGCAcggatgacga
ggaaaagatgatGGCACAGGAGTTTGCCAACATTCGTCTGTACGACTTGT
TATCAATGACGACACAACCCGTCCCTACGGCCGCTTTTTCTTCGGGTAAG
GCTAAAATTGAGGGGCGTACAGCttgggtgggaggagagcaagcagGCCT
TCACCCAGGTAGTGCGAGACCTCTCTCTTTCGTTGCGGCCTCTGGGAGCG
GCAGGTGTGCCGATGTGGCTGTAAGAAacaaagagagagggacTAGCAAC
GATACCCGCAGAAATTGTCATGTATCAGCTTCTAGGAGTACCACGACCGC
AATTTACAGCTCCGCCACTTATAAGCAGCCGGTCTCTCTTGCGACTGTCA
AAGAGCGGCATAACGTCGAAGAAGAGGCAAAAAAACAGCATCTGATTCCA
TCTCAAGAAGCAAGAAATGAGAGTATGGCTGCAACGGTTGGCGAAATTTT
CTCTTTTCGTGGCACAGGCTGCCGTAGCATTTCTACCGGTCGGAGTATAG
CAGTGGGCCGGGTAGAGCACGGCATCGGATCCGGACAACATGCGAACGAT
CATTTTGTCATGCGAAGAAGGGTTTTGGAACCAGTGGGCATCCCAGCTCA
CTTACAGCATGTGGAGGATCTAATGCTCATGGAGGCCATCCAGCGTTCCC
TGGAGGATGCTACCCGAAGACTAGAGCACTGTAGGGCGGAAGATGGCAAC
GAGATGTACGGTAACCAGCGGCAACTGAGTAGCATACAGGATGTAAAAGG
ATCGATAGACGGGGATGATGGTTGTGAAGACAGTTCTTAGATGGGGCTTG
CACATTCCAGCAAGCGTGCGCACATTATGAAGGAATTGGAAAGATTTTCC
AAGCCCTGTGGACTTTATCCATCGTGCACGTGGGAAGATCGGACTGTCCG
TAAACTCATTTTGGAGGGACGTATTGCTCCATGCTTTCCTGGAATGGAGG
ACAAAGGATGTGGCACCGAGGAATGTCCCATCTGTTTCTTACGTTACGTT
ATCCTCAATTGCACTCGTTGCTGCAATCATCCACTTTGCACGGAGTGCTA
CCTTCAGCTACAGGCGCCAAAGGACTTGCCGAGTTCATGTCCATATTGCA
ACCATCCGAAGCTCCAAATTCTTTACGGCAcggatgacgaggaaaagatg
atGGCACAGGAGTTTGCCAACATTCGTCTGTACGACTTGTTATCAATGAC
GACACAACCCGTCCCTACGGCCGCTTTTTCTTCGGGTAAGGCTAAAATTG
AGGGGCGTACAGCttgggtgggaggagagcaagcagGCCTTCACCCAGGT
AGTGCGAGACCTCTCTCTTTCGTTGCGGCCTCTGGGAGCGGCAGGTGTGC
CGATGTGGCTGTAAGAAacaaagagagagggacTAGCAACGATACCCGCA
GAAATTGTCATGTATCAGCTTCTAGGAGTACCACGACCGCAATTTACAGC
TCCGCCACTTATAAGCAGCCGGTCTCTCTTGCGACTGTCAAAGAGCGGCA
TAACGTCGAAGAAGAGGCAAAAAAACAGCATCTGATTCCATCTCAAGAAG
CAAGAAATGAGAGTATGGCTGCAACGGTTGGCGAAATTTTCTCTTTTCGT
GGCACAGGCTGCCGTAGCATTTCTACCGGTCGGAGTATAGCAGTGGGCCG
GGTAGAGCACGGCATCGGATCCGGACAACATGCGAACGATCATTTTGTCA
TGCGAAGAAGGGTTTTGGAACCAGTGGGCATCCCAGCTCACTTACAGCAT
GTGGAGGATCTAATGCTCATGGAGGCCATCCAGCGTTCCCTGGAGGATGC
TACCCGAAGACTAGAGCACTGTAGGGCGGAAGATGGCAACGAGATGTACG
GTAACCAGCGGCAACTGAGTAGCATACAGGATGTAAAAGGATCGATAGAC
GGGGATGATGGTTGTGAAGACAGTTCTTAG

Synonyms

Publications