EWM30312.1, cds366 (CDS) Nannochloropsis gaditana

Overview
NameEWM30312.1
Unique Namecds366
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:889543..889595 +
Alignment locationCM002455.1:889980..891066 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30312.1
Productring u-box domain-containing protein
Orig transcript idgnl|cribi|Naga_100003g130.1829.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:889543..889595 +
CM002455.1supercontigCM002455.1:889980..891066 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR017907Znf_RING_CS
Homology
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|585112971|gb|EWM30312.1| (ring u-box domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 792.341 bits (2045), Expect = 0.000e+0
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0 
Query:    1 MGLAHSSKRAHIMKELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDKGCGTEECPICFLRYVILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYGTDDEEKMMAQEFANIRLYDLLSMTTQPVPTAAFSSGKAKIEGRTAWVGGEQAGLHPGSARPLSFVAASGSGRCADVAVRNKERGTSNDTRRNCHVSASRSTTTAIYSSATYKQPVSLATVKERHNVEEEAKKQHLIPSQEARNESMAATVGEIFSFRGTGCRSISTGRSIAVGRVEHGIGSGQHANDHFVMRRRVLEPVGIPAHLQHVEDLMLMEAIQRSLEDATRRLEHCRAEDGNEMYGNQRQLSSIQDVKGSIDGDDGCEDSS 379
            MGLAHSSKRAHIMKELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDKGCGTEECPICFLRYVILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYGTDDEEKMMAQEFANIRLYDLLSMTTQPVPTAAFSSGKAKIEGRTAWVGGEQAGLHPGSARPLSFVAASGSGRCADVAVRNKERGTSNDTRRNCHVSASRSTTTAIYSSATYKQPVSLATVKERHNVEEEAKKQHLIPSQEARNESMAATVGEIFSFRGTGCRSISTGRSIAVGRVEHGIGSGQHANDHFVMRRRVLEPVGIPAHLQHVEDLMLMEAIQRSLEDATRRLEHCRAEDGNEMYGNQRQLSSIQDVKGSIDGDDGCEDSS
Sbjct:    1 MGLAHSSKRAHIMKELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDKGCGTEECPICFLRYVILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYGTDDEEKMMAQEFANIRLYDLLSMTTQPVPTAAFSSGKAKIEGRTAWVGGEQAGLHPGSARPLSFVAASGSGRCADVAVRNKERGTSNDTRRNCHVSASRSTTTAIYSSATYKQPVSLATVKERHNVEEEAKKQHLIPSQEARNESMAATVGEIFSFRGTGCRSISTGRSIAVGRVEHGIGSGQHANDHFVMRRRVLEPVGIPAHLQHVEDLMLMEAIQRSLEDATRRLEHCRAEDGNEMYGNQRQLSSIQDVKGSIDGDDGCEDSS 379
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|301113113|ref|XP_002998327.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262112621|gb|EEY70673.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 121.324 bits (303), Expect = 6.207e-28
Identity = 61/153 (39.87%), Postives = 90/153 (58.82%), Query Frame = 0 
Query:   14 KELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDK-GCGTEECPICFLRYV-ILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYGTDDEEKMMA-QEFANIRLYDLLSMT-------TQPVPTAAFSSGKAKIEGR 156
            +ELE+ ++P GLYPSC WE +T R+LI+E ++AP FPG E K GC T ECPICF+ Y   LN + CC  P+C+ECYLQ++ P+  P  CP+CN     + Y +    ++   +   N+R     S         ++P P++  S+  A +E R
Sbjct:   20 RELEKLTQPTGLYPSCPWELKTARRLIMERKLAPRFPGQETKEGCFTLECPICFMFYPGNLNTSSCCTKPICSECYLQIRPPQK-PICCPFCNQDDFSVRYASPSPAELATIRSMKNLRSPRRSSAIGIPKRADSEPAPSSTQSAQYASVEDR 171
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|1214703690|gb|OWZ15663.1| (hypothetical protein PHMEG_00010657 [Phytophthora megakarya])

HSP 1 Score: 118.627 bits (296), Expect = 7.836e-27
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 0 
Query:   14 KELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDK-GCGTEECPICFLRYV-ILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYGTDDEEKMMAQEFANIR 129
            +ELE+++ P GLYPSC WE +T R+LI+E ++AP F G E K G  T ECPICF+ Y   LN + CCN P+C+ECYLQ++ P+  P  CP+CNH    + Y     E    +   N+R
Sbjct:   20 RELEKYTHPTGLYPSCPWEFKTARRLIIERKLAPRFHGKEAKEGTFTLECPICFMFYPGSLNLSSCCNKPICSECYLQIRPPEK-PIPCPFCNHEAFSVDYTPTATELASIRSMKNLR 136
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|695428606|ref|XP_009529990.1| (hypothetical protein PHYSODRAFT_354883, partial [Phytophthora sojae] >gi|348676423|gb|EGZ16241.1| hypothetical protein PHYSODRAFT_354883, partial [Phytophthora sojae])

HSP 1 Score: 116.316 bits (290), Expect = 2.268e-26
Identity = 60/125 (48.00%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:   14 KELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDK-GCGTEECPICFLRYV-ILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYGTDDEEKMMAQEFANIR-LYDLLS 135
            +ELE+F++P GLYPSC WE +  R+LI+E +IAP FPG E K GC   ECPICF+ Y   LN + CCN P+C+ECYLQ++ P+     CP+CN     I Y           E A IR + DL S
Sbjct:   17 RELEKFTQPTGLYPSCPWELKAARRLIVERKIAPRFPGREAKEGCFALECPICFMFYPGSLNMSSCCNKPICSECYLQIRPPQKS-ICCPFCNQEAFTIRYTAPS-----PAELATIRSMKDLRS 135
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|953503349|emb|CEG36117.1| (ring u-box domain-containing protein [Plasmopara halstedii])

HSP 1 Score: 114.775 bits (286), Expect = 6.297e-26
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 0 
Query:   13 MKELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDK-GCGTEECPICFLRYV-ILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYGTDDEEKMMAQEFANIR 129
            M++L++F++P GLY +C WE +TVR+LI++ ++AP FPG E K GC T ECPICF+ Y   LN + CC+ P+C+ECYLQ++ P D    CP+CN     + Y         A E A IR
Sbjct:   19 MRDLDKFTQPTGLYSTCPWEHKTVRRLIVDKKLAPRFPGQETKDGCFTLECPICFMFYPGSLNASSCCSKPICSECYLQIRPP-DKHICCPFCNQEAFSVRYALPS-----AAELALIR 131
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|675202851|ref|XP_008910310.1| (hypothetical protein PPTG_15057 [Phytophthora parasitica INRA-310] >gi|566016944|gb|ETI39855.1| hypothetical protein F443_14620 [Phytophthora parasitica P1569] >gi|567954321|gb|ETK79959.1| hypothetical protein L915_14252 [Phytophthora parasitica] >gi|567982975|gb|ETL33377.1| hypothetical protein L916_14157 [Phytophthora parasitica] >gi|568012510|gb|ETL86688.1| hypothetical protein L917_13940 [Phytophthora parasitica] >gi|568042535|gb|ETM39860.1| hypothetical protein L914_14065 [Phytophthora parasitica] >gi|568089541|gb|ETN04383.1| hypothetical protein PPTG_15057 [Phytophthora parasitica INRA-310] >gi|570320598|gb|ETO68546.1| hypothetical protein F444_14633 [Phytophthora parasitica P1976] >gi|570944443|gb|ETP09700.1| hypothetical protein F441_14490 [Phytophthora parasitica CJ01A1] >gi|570975954|gb|ETP37871.1| hypothetical protein F442_14447 [Phytophthora parasitica P10297])

HSP 1 Score: 115.546 bits (288), Expect = 8.016e-26
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:   14 KELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDKGCG-TEECPICFLRYV-ILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILY 112
            +ELE+F++P GLYPSC WE +T R+LI+E ++AP F G E K  G T ECPICF+ Y   LN + CC+ P+C+ECYLQ++ P+  P  CP+CNH    + Y
Sbjct:   20 RELEKFTQPTGLYPSCPWELKTARRLIMERKLAPRFLGQETKEDGFTLECPICFMFYPGNLNTSSCCSKPICSECYLQIRPPQK-PICCPFCNHDDFSVRY 119
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|168061080|ref|XP_001782519.1| (predicted protein [Physcomitrella patens] >gi|162666004|gb|EDQ52671.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 113.62 bits (283), Expect = 7.686e-24
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 0 
Query:   17 ERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDKGCGTEECPICFLRYVILNCTRCCNHPLCTECYLQLQAPK-DLPSSCPYCNHPKLQILY--GTDDEEKMMAQ 123
            ER+++P GLYP    + R +R+LILE ++APCFPG E+     EECPICFL Y  +N ++CC   +CTEC+LQ+++P    P+ CP+C  P+  + Y      EEK M Q
Sbjct:   14 ERYTRPQGLYPHRDVDQRKLRRLILESKLAPCFPGAEEPATDLEECPICFLHYPSVNRSKCCTKGICTECFLQMKSPHVARPTQCPFCKTPQYAVEYRGAKTLEEKGMEQ 123
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|1173953071|gb|OQS00639.1| (hypothetical protein ACHHYP_03292 [Achlya hypogyna])

HSP 1 Score: 111.309 bits (277), Expect = 8.222e-24
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 0 
Query:    3 LAHSSKRAHIMKELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDKGCGTEECPICFLRY-VILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYG 113
            + +SS +    KELER+++P GLY +C WE + VRK+ILE ++AP +PG E     + ECPICFL Y   LN T CC   +C+EC LQ + P  +  SCP+CNH   +  + 
Sbjct:    1 MGNSSGKTRHTKELERYTQPTGLYTTCPWEHKVVRKMILERKLAPRYPGSESSRADSYECPICFLHYPSTLNQTTCCKQAICSECVLQTKPPNKV-VSCPFCNHDNFKTQFA 111
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|1173953566|gb|OQS01072.1| (hypothetical protein THRCLA_05778 [Thraustotheca clavata])

HSP 1 Score: 109.383 bits (272), Expect = 4.486e-23
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = 0 
Query:    3 LAHSSKRAHIMKELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDKGCGTEECPICFLRY-VILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYG 113
            + +SS +A   KELER+++P GLY SC WE++ VRKLILE ++AP +PG E     + ECPICFL Y   LN T CC   LCTEC LQ + P      CP+CN  + +  + 
Sbjct:    1 MGNSSVKARHAKELERYTRPTGLYKSCLWENKIVRKLILERKLAPRYPGSESPRDDSYECPICFLHYPSTLNQTTCCKQALCTECVLQTKPPGK-SVCCPFCNREEFKTNFA 111
[Close]
BLAST of EWM30312.1 vs. NCBI_GenBank
Match: gi|223996429|ref|XP_002287888.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977004|gb|EED95331.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 110.923 bits (276), Expect = 5.276e-23
Identity = 45/98 (45.92%), Postives = 67/98 (68.37%), Query Frame = 0 
Query:   15 ELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDKGCGTE-ECPICFLRYVILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQIL 111
            EL+   +P GLYPSC WE + +R+L+ +G++A    G + +   T+ ECPICF+ Y   N T+CC   +CTECYLQ++  KD  ++CP+CN+PK+ IL
Sbjct:   78 ELDARCQPSGLYPSCEWEPKAIRRLVGDGKLAARLKGADSRITKTDRECPICFMYYSENNVTKCCRATICTECYLQIKPQKDKHTTCPFCNNPKMIIL 175
The following BLAST results are available for this feature:
BLAST of EWM30312.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112971|gb|EWM30312.1|0.000e+0100.00ring u-box domain-containing protein [Nannochlorop... [more]
gi|301113113|ref|XP_002998327.1|6.207e-2839.87conserved hypothetical protein [Phytophthora infes... [more]
gi|1214703690|gb|OWZ15663.1|7.836e-2746.61hypothetical protein PHMEG_00010657 [Phytophthora ... [more]
gi|695428606|ref|XP_009529990.1|2.268e-2648.00hypothetical protein PHYSODRAFT_354883, partial [P... [more]
gi|953503349|emb|CEG36117.1|6.297e-2646.22ring u-box domain-containing protein [Plasmopara h... [more]
gi|675202851|ref|XP_008910310.1|8.016e-2651.49hypothetical protein PPTG_15057 [Phytophthora para... [more]
gi|168061080|ref|XP_001782519.1|7.686e-2445.45predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1173953071|gb|OQS00639.1|8.222e-2444.64hypothetical protein ACHHYP_03292 [Achlya hypogyna... [more]
gi|1173953566|gb|OQS01072.1|4.486e-2347.32hypothetical protein THRCLA_05778 [Thraustotheca c... [more]
gi|223996429|ref|XP_002287888.1|5.276e-2345.92predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna366rna366Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications