rna3659, rna3659 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3659
Unique Name	rna3659
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1765
Alignment location	CM002461.1:905559..908574 +

Link to JBrowse

Properties


Property Name	Value
Product	protein phosphatase 1a isoform 2
Orig transcript id	gnl\|cribi\|Naga_100309g4.7056.mrna
Orig protein id	gnl\|cribi\|Naga_100309g4.7056
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:905559..908574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100309g4	gene3525	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3659	rna3659-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27022.1	cds3650	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:905559..908574+
coding sequence from alignment at CM002461.1:905559..908574+

mRNA sequence

>rna3659 ID=rna3659|Name=rna3659|organism=Nannochloropsis gaditana|type=mRNA|length=1765bp
CTTTCACGAGTCCTCTTCCCCGCCCTATCGGTTCCCAGGTTTTCCCATGC
CTCACGACCATGACGTTGACGAGCGCATTGCTCGCGTCCGCCTTGCTTTG
AGAGACGCGTGTCAAGACCATGTCCTCAGTTATGTAGACGCTGGCCTCGC
CACTCCGGAAGAGACAGCGAGCCTCCTCACACAAATCGAAGCCCTTGATC
TTCCTGAATTAAATCGCATTTTTAACGGACTCGGAATCGAACCATCGGCA
TCCGTTGCTGCAGCTGCGGGGAATGACGAATATGCACCGCTGTCTGATTT
GGCCTCGGTAGATACCACCTCCCCTGCCCTCTTGCGAGAGTGGGAGGAGA
TGGGCCTAGACGCCATTGGCCGCGGAAAGGTTGCGGCCTTGGTTTTGAGC
GGTGGGCAGGGCACGCGGCTCGGATTTGACGGACCCAAAGGAATGTATGA
CATTGGCTTGCCTTCTGGAAAGTCCATCTTTCAATTGCTAGCGGAAAGAA
TCTTGCGAGTGTCAGCATTGGCAGCGGAGAGGTTCCTGCGTAGTCCCGAA
GGCAAGGACTGCCCGAATGAGGGATCAACACGGAAGCACATCCCTTTCTA
CGTTATGACGAGCCCTTTGAATCATGAGAAGACTCAGGACTTCTTCAAGG
AAAACAACTACTTTGGCTTGTGCCCCGCAGACGTCTTTTTTTTTCGGCAG
AGCACCATGCCCTGCTTCGATTTGAAAGGAAAGCTGCTATTGGAGTCACC
TACATCGCTTGCTCAGGCACCGGATGGCAATGGGGGGATCTACCCCTCGC
TCGCCCGGACAGGGGCCCTGGCAGACATGCGCGCGCGCGGAATCGACGCC
TTCCACGTGTTTAGCGTGGACAACGTCCTCATAAAAGTGGCGGATCCGAC
CTTTCTAGGATTTTGCCTGGCCCGAAAGAGCGACTGTGGGAACATGGTGG
TGTGGAAGAAGGCGGCAGAGGAGAAGGTAGGGGTAATGGTCCGGAAAAAT
GGGCGGCCGGCGGTGGTTGAGTACAGCGAGATGGACACAAGTATGACGAC
GCTGCGAGAAGCGGGCAAAGCCGGGGAGGAAGGCAAGCTGGTATACGGGG
CCGGGAATATCTGCAGTCATTTCTTGACGCTGGACTTCGTGGAGCACGTC
GTCCTGCCCCGCTTTGGCGCCGTCTATCATGCTGCTCGGAAGATGATTCC
CGCCCTTCCCACCTCTTTTGCCTCGACCTTTCCCGTCACCGTGACAGAAA
AGGTCGCGGGGGTGAAGTTGGAGGCATTCATTTTCGATGTGCTTCCCTTT
TCCGAACGCGTGGCTCTGTGGGAAGTGCGGAGAGAAGACGCATTTGCGCC
AGTTAAAGACGCGCCCGGGAGCGGAAGCGACACCCCGGAAAGGGCCCGAG
AAATGCTGTCCGCAGAGGCAGTGCGATGGGTAGGCAGGGCGGGGGGGAAG
GTAGTGGGCCAGGGGGAGGGAGGGGGGGAGGGGGGGAGGGGGGGTGAGGG
TTCGGAGATCAGTCCGTTGGTCTCCTACCGAGGAGAGGGACTGGGCGAAC
GGGTAGGTGGGATGGAAGTTGCGCTACCGATCCGTTTCCTGGATGCGTGA
GGCGGGTGCATGCCGAGTGAATGAACGTGGAATGTAAGAGGCTTGGATGT
GGGAGGGTCGTTGAAAGAAACCTCACTCGGAGCTGACGTTGGAATCTGAC
TCACTCGGATACCTGCCAAGGGCCCTCATTTTTCGTGTCCTCAAAGCTTC
CTTCAAATACGATCC

protein sequence of rna3659

>rna3659-protein ID=rna3659-protein|Name=rna3659|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
MVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDT
SGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKR
IESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHV
RDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQ
CLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESNDG
GKASERGKEEK

mRNA from alignment at CM002461.1:905559..908574+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3659 ID=rna3659|Name=rna3659|organism=Nannochloropsis gaditana|type=mRNA|length=3016bp|location=Sequence derived from alignment at CM002461.1:905559..908574+ (Nannochloropsis gaditana)
TAGTGGGCAGTGACACATCGTCGAGCCAGTCTGCTTGTCAATTTAGGGCA
TTTGCGAACGCATGTGATGTAAAGGATGCTGGTTTTTTTCATTGATGACC
ACTATTGTCTAGGACACTTTGTCAGAAAGGGAtgccctcttgctccttga
AGCATGGGCTATGAAGGAGTGGCCTTCCACCAACTTGATGTCTCTACTCA
CGAATAACGGAGGTTTTGCATTTCATCgatccccttttctcccgttCTTC
TAACTGCAGGAAACACAGAAGTTGTTTCTGGAAGTCGATTGACATGGGTA
GTCATCTGGCCAAGCCCATCACCGGTAAGTCGGGTTCCTCCCTTTGGGTC
TGGAATGAGACCAAATAATTCAAGGAGATCAGTGCGAATGAAGTTTGGAG
AATCCATTACTTTTCGAACGCTCGCGTGAAACCACCTTTGCGTCTCAAAA
CGCGTATGAAATGCgtagaagggaagaggtgggTAATATACTCCTGAACC
CTCATTTCTGCCTACCCGCTATCTCCGTGCATTGCCCCACCGCCATGCTT
TATATAGAGAAAGAATCGTACGAGAGTAATGCACATGGGCTAAATTTTGG
GGCAGCCGCGATGCAAGGCTGGcgggtggagatggaagacgCTCACACGG
TGATCGAGACTATGGGTAAGACAAGCGGGTgcctgggaaggagaaggcat
aGTCAACCCCCGAGGCCGAAGCCCTGCTTGCAACAAGGGTCTGGCGTCAA
TGCGCAGGCTGATGACTGCGACCGTAGTGTGAGAAAAGGATTCGAGGATC
TGagagccgggaggaagaggggaaaggaaaacatAGGGGTATCAGGGGCA
GTGTCTTATCAGACAACGCGCTGATTCTCGGTGCCAGATGAAGTGTCCCT
CGATAATCCTCCTTTGTTTCCCGAGGCCATGCGGCTGCCCTGGTCGTCCA
GAGTAGATTGAAGCCGCCCCGCtcacctctcccctccttcccttcatcgG
CCGGGACCTCAGACCCGGAGCTGGAGGGCCACTCTTTCATCGCAGTCTAC
GACGGGCACGGGGGGCAGTACTCCGCCATCTATGCGGGGAAGCACATGGT
GGATTTCGTCAGACGGACGGTAGCTTACACGGAGTACAAGAAAACCAAGG
ACGTGGCCCACCTCCAGGTGAGGTTCTCCCGTGTGTCTAGACCGCCCTGT
CGCTCCTGTTTGGACCCACAGTAAGGAGGCTGCGTCTTCGATTCTTACGA
TTTCCCCGCCTTGGTTGTACGTTGCTCACGGTCCCGAACGGTGCTCTctg
tcgcctccctcttaccTGCTTCTCGTCAAGAGAAGGGCTCCACACGAGCG
ATCCACTTCTGTTCCGAGGGACACTTGACACTCCCCGCTCACCGCTTCTg
gctctcccttcccctcttcctccacccagaCCGCCATCCACTCCGCGTTT
CTGAATCTGGACGAGTCCCTGAAACTCCAAGATGAATTTGTCCACAAGCA
CGATACCAGTGGATGCACGGCCATCTGCGCCATCATCACGCCTTCCCATG
TGGTGGTTGCCAACGCCGGCGACTCTCGCGCGGTCATGTACACTACAAAG
GGCACCCACCAGCTCTCGCGCGACCACAAACCCTACCTGGAGGACGAGCG
GAAGCGGATCGAGAGCGCGGGGGGGATGGTGAGCATGCAGCGTGTCGACG
GGGACTTGGCCCTGTCGCGGTCATTGGGAGACTTCCAATTCAAAGACCGG
TGAGTCCCACGGGGGTCCCGTCACTGCCGCCGTGTGAGGGTGGATTTGGA
TTTATGGTGTCCGAATTAATTTCCGTGTGactctcctgctcctctttttG
CCCATTTTCAACGTTTTGTGGCGTAAGGTGACGCCGCCATGACCTCTCGC
CCCTGAGCGCTCCTGATCCTTATCCCCACCTATCCTCCGCAGAAACCTTC
CCCCCGAACGCCAAAAAGTCACGGCTGTGCCCGAGGTTCAGGTGCATGTA
CGGGATCCGGAGAAGGACTtgtgtctcctcctcgcctgcgaCGGGGTCTG
GGATGTCTGTGAGAGCGCCGAGGCCGGGCGCATCGTCTTCGACATCctgg
gggacggggagaaacGGATGGCCTTGGTCGCGGAGGAGCTCTTGGACCAA
TGCCTGTTGCGGTATTCGAAAGACAATATGTCGGCGGTGGTCGTTGGCTT
TGCCAAGttgtgggaggagcacggcaaggagggagagggggtggagggga
ggcggcgaaggaggctgcctgcgggggaggaggaggaatcgaacgatgga
ggaaaggcgtcagagaggggaaaggaagaaaagtaGGGGCTGGAAGAGCT
GATGTTTTATCGTGAGAGGAGGATCAAGGCCGACACGAGGGGTAAGAAGA
CCATAGATTAGTTGCCTATTTGCCGATAAATTGAACCAGTAATGGCGCGA
GCACCAGGAGCAGCATCCACAGCATTTGCAGCAGCCGTGtcggcaggagg
gggggggtcggtaAGCACATGCCAAGAAAGAGGCCGATGGATGGTGATAT
CCAACGCATGGAGCAGGAaacgagaagaaagagacaaGGAGTGCATGTGG
TATGGACGGGCGTCATCGTGAGCTGGATTGCATGAGCAAACATTCGGGAA
GCGTGCAAGCAAATTGCTTCAACTGATGTGAACACGGCGGTGCGATTCTA
TACGATGGGACAGTTTTGATAAACAGTGAATTCTGATCCCAGCGATAAGA
GATGCGGTCGCGTAAACTTTTCTGGCTGGCATGTGGCTACATTCGAATGG
GAGCCAAGAGGGATGAGCAACAGAGCCTCCCATCCCTGCACTTTTTCTAA
AATTGACAATAGCAACAACTGTTTTGCGAATTTGCCGGAAAGAGTGAAGA
TTAAAGTGTATTTCTCTGCAAGTCCCTCAGTATTATGTGCATGCATGTCA
AAAAATAATTCAAGCCAGCGGGCTCGATAGCCCAAAAGAAACACAAAACT
ATCAAGAGCGCGGAGA

Coding sequence (CDS) from alignment at CM002461.1:905559..908574+

>rna3659 ID=rna3659|Name=rna3659|organism=Nannochloropsis gaditana|type=CDS|length=2358bp|location=Sequence derived from alignment at CM002461.1:905559..908574+ (Nannochloropsis gaditana)
ATGGTGGATTTCGTCAGACGGACGGTAGCTTACACGGAGTACAAGAAAAC
CAAGGACGTGGCCCACCTCCAGaCCGCCATCCACTCCGCGTTTCTGAATC
TGGACGAGTCCCTGAAACTCCAAGATGAATTTGTCCACAAGCACGATACC
AGTGGATGCACGGCCATCTGCGCCATCATCACGCCTTCCCATGTGGTGGT
TGCCAACGCCGGCGACTCTCGCGCGGTCATGTACACTACAAAGGGCACCC
ACCAGCTCTCGCGCGACCACAAACCCTACCTGGAGGACGAGCGGAAGCGG
ATCGAGAGCGCGGGGGGGATGGTGAGCATGCAGCGTGTCGACGGGGACTT
GGCCCTGTCGCGGTCATTGGGAGACTTCCAATTCAAAGACCGAAACCTTC
CCCCCGAACGCCAAAAAGTCACGGCTGTGCCCGAGGTTCAGGTGCATGTA
CGGGATCCGGAGAAGGACTtgtgtctcctcctcgcctgcgaCGGGGTCTG
GGATGTCTGTGAGAGCGCCGAGGCCGGGCGCATCGTCTTCGACATCctgg
gggacggggagaaacGGATGGCCTTGGTCGCGGAGGAGCTCTTGGACCAA
TGCCTGTTGCGGTATTCGAAAGACAATATGTCGGCGGTGGTCGTTGGCTT
TGCCAAGttgtgggaggagcacggcaaggagggagagggggtggagggga
ggcggcgaaggaggctgcctgcgggggaggaggaggaatcgaacgatgga
ggaaaggcgtcagagaggggaaaggaagaaaagtaGATGGTGGATTTCGT
CAGACGGACGGTAGCTTACACGGAGTACAAGAAAACCAAGGACGTGGCCC
ACCTCCAGaCCGCCATCCACTCCGCGTTTCTGAATCTGGACGAGTCCCTG
AAACTCCAAGATGAATTTGTCCACAAGCACGATACCAGTGGATGCACGGC
CATCTGCGCCATCATCACGCCTTCCCATGTGGTGGTTGCCAACGCCGGCG
ACTCTCGCGCGGTCATGTACACTACAAAGGGCACCCACCAGCTCTCGCGC
GACCACAAACCCTACCTGGAGGACGAGCGGAAGCGGATCGAGAGCGCGGG
GGGGATGGTGAGCATGCAGCGTGTCGACGGGGACTTGGCCCTGTCGCGGT
CATTGGGAGACTTCCAATTCAAAGACCGAAACCTTCCCCCCGAACGCCAA
AAAGTCACGGCTGTGCCCGAGGTTCAGGTGCATGTACGGGATCCGGAGAA
GGACTtgtgtctcctcctcgcctgcgaCGGGGTCTGGGATGTCTGTGAGA
GCGCCGAGGCCGGGCGCATCGTCTTCGACATCctgggggacggggagaaa
cGGATGGCCTTGGTCGCGGAGGAGCTCTTGGACCAATGCCTGTTGCGGTA
TTCGAAAGACAATATGTCGGCGGTGGTCGTTGGCTTTGCCAAGttgtggg
aggagcacggcaaggagggagagggggtggaggggaggcggcgaaggagg
ctgcctgcgggggaggaggaggaatcgaacgatggaggaaaggcgtcaga
gaggggaaaggaagaaaagtaGATGGTGGATTTCGTCAGACGGACGGTAG
CTTACACGGAGTACAAGAAAACCAAGGACGTGGCCCACCTCCAGaCCGCC
ATCCACTCCGCGTTTCTGAATCTGGACGAGTCCCTGAAACTCCAAGATGA
ATTTGTCCACAAGCACGATACCAGTGGATGCACGGCCATCTGCGCCATCA
TCACGCCTTCCCATGTGGTGGTTGCCAACGCCGGCGACTCTCGCGCGGTC
ATGTACACTACAAAGGGCACCCACCAGCTCTCGCGCGACCACAAACCCTA
CCTGGAGGACGAGCGGAAGCGGATCGAGAGCGCGGGGGGGATGGTGAGCA
TGCAGCGTGTCGACGGGGACTTGGCCCTGTCGCGGTCATTGGGAGACTTC
CAATTCAAAGACCGAAACCTTCCCCCCGAACGCCAAAAAGTCACGGCTGT
GCCCGAGGTTCAGGTGCATGTACGGGATCCGGAGAAGGACTtgtgtctcc
tcctcgcctgcgaCGGGGTCTGGGATGTCTGTGAGAGCGCCGAGGCCGGG
CGCATCGTCTTCGACATCctgggggacggggagaaacGGATGGCCTTGGT
CGCGGAGGAGCTCTTGGACCAATGCCTGTTGCGGTATTCGAAAGACAATA
TGTCGGCGGTGGTCGTTGGCTTTGCCAAGttgtgggaggagcacggcaag
gagggagagggggtggaggggaggcggcgaaggaggctgcctgcggggga
ggaggaggaatcgaacgatggaggaaaggcgtcagagaggggaaaggaag
aaaagtaG

Synonyms

Publications