EWM27022.1, cds3650 (CDS) Nannochloropsis gaditana

Overview
NameEWM27022.1
Unique Namecds3650
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:906654..906725 +
Alignment locationCM002461.1:906988..907307 +
Alignment locationCM002461.1:907501..907894 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27022.1
Productprotein phosphatase 1a isoform 2
Orig transcript idgnl|cribi|Naga_100309g4.7056.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:906654..906725 +
CM002461.1supercontigCM002461.1:906988..907307 +
CM002461.1supercontigCM002461.1:907501..907894 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0004722protein serine/threonine phosphatase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006470protein dephosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR015655PP2C
IPR001932PPM-type_phosphatase_dom
Homology
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|585109193|gb|EWM27021.1| (protein phosphatase 1a isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 538.495 bits (1386), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query:    1 MVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESNDGGKASERGKEEK 261
            MVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESNDGGKASERGKEEK
Sbjct:   75 MVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESNDGGKASERGKEEK 335          
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|585109194|gb|EWM27022.1| (protein phosphatase 1a isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query:    1 MVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESNDGGKASERGKEEK 261
            MVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESNDGGKASERGKEEK
Sbjct:    1 MVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESNDGGKASERGKEEK 261          
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|299471855|emb|CBN77025.1| (protein phosphatase, putative [Ectocarpus siliculosus])

HSP 1 Score: 209.534 bits (532), Expect = 8.312e-63
Identity = 115/250 (46.00%), Postives = 161/250 (64.40%), Query Frame = 0
Query:    1 MVDFVRRTVAYTEYKKT--KDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESN 248
            M+  V  T  + EY ++  KD   L+ A+++AFL  D S+K   +   + D SG TA+ + +TP+HVV+A+AGDSRAV+ + +     + DHKPY + ER RIE AGG+VSM+RVDGDLA+SR+LGDFQ+KD  LPPE  KV+  PE +   R P+ +  L++ACDG+WDV    +  + V +I  +GE  M L  EE+LD      S+DNMSAV+V F  L  +  + G+GV GRR +R  A E+ ESN
Sbjct:   75 MMRHVMETAEFAEYAESTEKDTTVLEKALYAAFLACDRSVKASQDANPEGDRSGSTAVASFVTPTHVVLAHAGDSRAVLASGQKVAVATADHKPYNDGERARIEKAGGVVSMKRVDGDLAVSRALGDFQYKDDALPPEECKVSPAPETRSFPRSPQDEF-LVVACDGIWDVMSDEDCTQAVREIFVEGESSMGLACEEILDMG----SRDNMSAVLVAFPGL--KRSETGKGVAGRRAQR--AAEDSESN 315          
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|1173954910|gb|OQS02034.1| (phosphatase 2C [Thraustotheca clavata])

HSP 1 Score: 197.593 bits (501), Expect = 2.611e-58
Identity = 110/235 (46.81%), Postives = 145/235 (61.70%), Query Frame = 0
Query:   11 YTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDR-NLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEE 244
            +    K KD   +  A+  AFL LDE  +   + V   D SGCTAI A +TP+H++VAN+GDSR+V+ T      +S DHKP  E ER RIE+AGG V   RV+GDLA+SR+LGDF +K R +L PE Q+V+A P+++   R  E +  L+LACDG+WDV  + +A   V  ++  GE  M L+ EELLD CL   S+DNMS V+V FA         GEGV G R+ R  A EE
Sbjct:   81 HNNVGKEKDPNEIGKAMGKAFLELDEKHRALTQIVSGEDHSGCTAIAAFVTPTHIIVANSGDSRSVLSTGGTVVPMSFDHKPNNEKERMRIENAGGSVRNNRVNGDLAVSRALGDFVYKQRSDLKPEEQQVSAEPDIKTQHRSKEDEF-LILACDGIWDVMTNDDACDFVRSLMNKGESNMGLICEELLDHCLQLGSRDNMSVVIVKFAG---AKIGTGEGVMGLRKAREKAIEE 311          
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|953503746|emb|CEG35312.1| (protein phosphatase [Plasmopara halstedii])

HSP 1 Score: 197.978 bits (502), Expect = 3.284e-58
Identity = 108/236 (45.76%), Postives = 154/236 (65.25%), Query Frame = 0
Query:   19 DVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDR-NLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGF--AKLWEEHGKEGEGVEGRR--RRRLPAGEEEESND 249
            D   +  A+  AF+NLD++++   +  +  D SGCTAI A++TP+H++VAN+GDSR+VM     T ++S DHKP   +ERKRIE AGG+V   RV+GDLA+SR+LGDF +K R +LP E+Q+V+A PE+QV   +  ++  L+LACDG+WDV  + E    +  ++ DGE  + L+AEE+LD CL   S+DNMS V+V F  AK       +G GV   R  R RL   E+ +S D
Sbjct:   97 DPKKIGKAMRDAFMNLDQNIRKTFDENYASDQSGCTAITALVTPTHIIVANSGDSRSVMAKGGRTVEMSFDHKPINAEERKRIEQAGGLVRSNRVNGDLAVSRALGDFSYKARADLPAEKQQVSAEPEIQVQKIEKTEEF-LVLACDGIWDVMSNDEICAYIRQLMNDGEMDLKLIAEEILDNCLRAGSRDNMSVVIVKFPGAKF-----GQGGGVSKIREERARLEMAEQNKSGD 326          
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|301105313|ref|XP_002901740.1| (protein phosphatase 2C, putative [Phytophthora infestans T30-4] >gi|262099078|gb|EEY57130.1| protein phosphatase 2C, putative [Phytophthora infestans T30-4])

HSP 1 Score: 195.667 bits (496), Expect = 2.612e-57
Identity = 106/234 (45.30%), Postives = 154/234 (65.81%), Query Frame = 0
Query:   19 DVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDR-NLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGF--AKLWEEHGKEGEGVEGRRRRRLPAGEEEESND 249
            D A +  A+  AF+NLD++++   +  +  D SGCTAI A++TP+H++VAN+GDSR+VM     T ++S DHKP    ERKRI+ AGG+V   RV+GDLA+SR+LGDF +K R +LP E+Q+V+A P+++V   D  ++  L+LACDG+WDV  + E    V  ++ +GE  + L+AEE+LD CL   S+DNMSAV+V F  AKL    G  G   + R  R      E+++ND
Sbjct:   97 DPAKIGKAMRDAFMNLDQNIRKTFDESYGSDQSGCTAIAALVTPTHIIVANSGDSRSVMAKNGRTVEMSFDHKPINAGERKRIQDAGGLVRSNRVNGDLAVSRALGDFSYKARADLPAEQQQVSAEPDIEVQKIDKTEEF-LVLACDGIWDVMSNDEICAFVRQLMSNGETDLKLIAEEILDNCLRAGSRDNMSAVIVKFPGAKL----GSGGGVAKIREERARLEKAEQDTND 325          
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|675165751|ref|XP_008891760.1| (hypothetical protein PPTG_02437 [Phytophthora parasitica INRA-310] >gi|566027124|gb|ETI50035.1| hypothetical protein F443_06319 [Phytophthora parasitica P1569] >gi|567964436|gb|ETK89922.1| hypothetical protein L915_06193 [Phytophthora parasitica] >gi|567993137|gb|ETL43320.1| hypothetical protein L916_06131 [Phytophthora parasitica] >gi|568107889|gb|ETN22513.1| hypothetical protein PPTG_02437 [Phytophthora parasitica INRA-310] >gi|570330831|gb|ETO78779.1| hypothetical protein F444_06382 [Phytophthora parasitica P1976] >gi|570954546|gb|ETP19803.1| hypothetical protein F441_06327 [Phytophthora parasitica CJ01A1] >gi|570989557|gb|ETP47760.1| hypothetical protein F442_06362 [Phytophthora parasitica P10297] >gi|970636074|gb|KUF80808.1| phosphatase 1A protein [Phytophthora nicotianae])

HSP 1 Score: 193.741 bits (491), Expect = 1.463e-56
Identity = 106/232 (45.69%), Postives = 152/232 (65.52%), Query Frame = 0
Query:   19 DVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDR-NLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGF--AKLWEEHGKEGEGVEGRR--RRRLPAGEEE 245
            D A +  A+  AF+NLD++++   +  +  D SGCTAI A++TP+H++VAN+GDSR+VM     T ++S DHKP    ERKRI+ AGG+V   RV+GDLA+SR+LGDF +K R +LP E+Q+V+A P+++V   D  ++  L+LACDG+WDV  + E    +  ++ +GE  + L+AEE+LD CL   S+DNMS V+V F  AKL       G GV   R  R RL   E+E
Sbjct:   97 DPAKIGKAMRDAFMNLDQNIRKTFDESYGSDQSGCTAIAALVTPTHIIVANSGDSRSVMAKNGRTVEMSFDHKPINAGERKRIQDAGGLVRSNRVNGDLAVSRALGDFSYKARADLPAEQQQVSAEPDIEVQKIDKTEEF-LVLACDGIWDVMSNDELCAYIRQLMNNGESDLKLIAEEVLDNCLRAGSRDNMSVVIVKFPGAKL-----GSGGGVAKIREERARLEKAEQE 322          
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|568022442|gb|ETL96512.1| (hypothetical protein L917_06009 [Phytophthora parasitica] >gi|568052805|gb|ETM49668.1| hypothetical protein L914_06129 [Phytophthora parasitica])

HSP 1 Score: 193.356 bits (490), Expect = 1.479e-56
Identity = 106/232 (45.69%), Postives = 152/232 (65.52%), Query Frame = 0
Query:   19 DVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDR-NLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGF--AKLWEEHGKEGEGVEGRR--RRRLPAGEEE 245
            D A +  A+  AF+NLD++++   +  +  D SGCTAI A++TP+H++VAN+GDSR+VM     T ++S DHKP    ERKRI+ AGG+V   RV+GDLA+SR+LGDF +K R +LP E+Q+V+A P+++V   D  ++  L+LACDG+WDV  + E    +  ++ +GE  + L+AEE+LD CL   S+DNMS V+V F  AKL       G GV   R  R RL   E+E
Sbjct:   97 DPAKIGKAMRDAFMNLDQNIRKTFDESYGSDQSGCTAIAALVTPTHIIVANSGDSRSVMAKNGRTVEMSFDHKPINAGERKRIQDAGGLVRSNRVNGDLAVSRALGDFSYKARADLPAEQQQVSAEPDIEVQKIDKTEEF-LVLACDGIWDVMSNDELCAYIRQLMNNGESDLKLIAEEVLDNCLRAGSRDNMSVVIVKFPGAKL-----GSGGGVAKIREERARLEKAEQE 322          
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|1214712845|gb|OWZ23765.1| (Protein phosphatase 2C [Phytophthora megakarya])

HSP 1 Score: 192.971 bits (489), Expect = 2.453e-56
Identity = 107/236 (45.34%), Postives = 155/236 (65.68%), Query Frame = 0
Query:   19 DVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDR-NLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGF--AKLWEEHGKEGEGVEGRR--RRRLPAGEEEESND 249
            D  ++  A+  AF+NLD++++   +  +  D SGCTAI A++TP+H++VAN+GDSR+VM     T ++S DHKP    ERKRI+ AGG+V   RV+GDLA+SR+LGDF +K R +LP E+Q+V+A P+++V   D  ++  L+LACDG+WDV  + E    +  ++ +GEK + L+AEE+LD CL   S+DNMS V+V F  AKL      +G GV   R  R RL   E E + D
Sbjct:   97 DPHNIGKAMRDAFMNLDQNIRETFDKNYGSDQSGCTAIAALVTPTHIIVANSGDSRSVMAKDGRTVEMSFDHKPINVRERKRIQDAGGLVRSNRVNGDLAVSRALGDFSYKARADLPAEQQQVSAEPDIEVQKIDKTEEF-LVLACDGIWDVMSNDELCAYIRQLMNNGEKDLKLIAEEILDNCLRAGSRDNMSVVIVKFPGAKL-----GQGGGVAKIREERARLEKAEREANGD 326          
BLAST of EWM27022.1 vs. NCBI_GenBank
Match: gi|673027204|ref|XP_008867563.1| (hypothetical protein H310_04828 [Aphanomyces invadans] >gi|574476336|gb|ETW03334.1| hypothetical protein H310_04828 [Aphanomyces invadans])

HSP 1 Score: 192.2 bits (487), Expect = 5.918e-56
Identity = 109/242 (45.04%), Postives = 151/242 (62.40%), Query Frame = 0
Query:    1 MVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTT-KGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDR-NLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGF--AKLWEEHGKEGEGVEGRRRRR 238
            +VD + +     ++K   D   +  A+ +AFL LD  L+      +  D SGCTAI AI+T +H++VAN+GDSR+V+ T       +S DHKP    E+ RIE+AGGMV   RV+GDLA+SR+LGD+ FK+R +L PE Q+V+  P++++  R    +  LLLACDGVWDV  + EA   V  ++  GE+ M L+ EELLD CL   S+DNMS V+V F  AK       EGEGV G R++R
Sbjct:   74 LVDTLAKGQGNNQHKNEPDA--IGAALRNAFLTLDNDLRKLQRVENGEDQSGCTAIAAIVTDTHIIVANSGDSRSVLATCGDAVEPMSFDHKPNNPREKLRIENAGGMVRNNRVNGDLAVSRALGDYYFKERHDLAPEEQQVSPEPDIKIEARSAANEF-LLLACDGVWDVLSNEEACDFVRSVMKLGERDMGLICEELLDHCLSLDSRDNMSVVLVAFDGAKF-----GEGEGVYGLRKQR 307          
The following BLAST results are available for this feature:
BLAST of EWM27022.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109193|gb|EWM27021.1|0.000e+0100.00protein phosphatase 1a isoform 2 [Nannochloropsis ... [more]
gi|585109194|gb|EWM27022.1|0.000e+0100.00protein phosphatase 1a isoform 2 [Nannochloropsis ... [more]
gi|299471855|emb|CBN77025.1|8.312e-6346.00protein phosphatase, putative [Ectocarpus siliculo... [more]
gi|1173954910|gb|OQS02034.1|2.611e-5846.81phosphatase 2C [Thraustotheca clavata][more]
gi|953503746|emb|CEG35312.1|3.284e-5845.76protein phosphatase [Plasmopara halstedii][more]
gi|301105313|ref|XP_002901740.1|2.612e-5745.30protein phosphatase 2C, putative [Phytophthora inf... [more]
gi|675165751|ref|XP_008891760.1|1.463e-5645.69hypothetical protein PPTG_02437 [Phytophthora para... [more]
gi|568022442|gb|ETL96512.1|1.479e-5645.69hypothetical protein L917_06009 [Phytophthora para... [more]
gi|1214712845|gb|OWZ23765.1|2.453e-5645.34Protein phosphatase 2C [Phytophthora megakarya][more]
gi|673027204|ref|XP_008867563.1|5.918e-5645.04hypothetical protein H310_04828 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3659rna3659Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications