rna3652, rna3652 (mRNA) Nannochloropsis gaditana

Overview
Namerna3652
Unique Namerna3652
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length786
Alignment locationCM002461.1:886155..887231 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100056g3.10447.mrna
Orig protein idgnl|cribi|Naga_100056g3.10447
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:886155..887231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100056g3gene3518Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3652rna3652-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27034.1cds3643Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3652 ID=rna3652|Name=rna3652|organism=Nannochloropsis gaditana|type=mRNA|length=786bp
ATGGGAGAGAATCATGCAAACGATTGTCACTATCTGATGAAAGGAGACGA
CGAGGAGACTTGTATCGATGGGCTCAACACGTCAAATAAGCACCAGAACG
AGGAATTTTGGAGAAAGAAAACCAGCCGATGGGACGAGGGAAGCTCACTG
CGCCGCATGCTCAAGGTGTTCATCTTTGTGATCGGGCTCCTCTTCGTAAC
GAATCTGGTCTATCAACAAACAAAAGAAAACAGTAAGAAATCGGATGATC
TTAGCCTGGCTACAATCCAGCATGGAGAGAGCTCGAGCGCAGACGAGGAA
AATGAGGTTGCCGCAGCTGCCGAAGATGAGGGTTTGCATCAAGAAACATC
CAGCAACGGGAACAAGGCAGATCTTATTCAGATGAGTGTGGCAAATGACA
CCGCCAAGATGTTGACTGCTCGGCAAACCATCGCCTCTGCCCTTAAGGCG
CTTCAAAAAGATGTAGGGCCCGAGTATGCTTCGGAGCTGTTTGGGTCAGT
ACGTTTTTGGAACAGGAGGTATATCAAGCAGAAGCTGATTCGCGCTCTGC
TGGGTCAGAACGGCTGTCCGGGCAAGGCCCAGAGTGACCACGACTTCATC
ATGTCTTTCGCAGGGACCTCTGTGACGGCTGGGCACGACAATTACTTCAA
TCAGTCCTATCCGATTGTTCTAGAAAGGCTTTTGCTCGACTCGTACACTG
CTGCAGGATTGAATCTGGAAGTTCGGAATCATGCCATGGGGTTCAACCCT
GCCATTCCCGCGGCATTCTGTGTGAGGAGCCAATAA
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protein sequence of rna3652

>rna3652-protein ID=rna3652-protein|Name=rna3652|organism=Nannochloropsis gaditana|type=polypeptide|length=358bp
MSVSGPLKNAYVEEWMRNALYLPKRPALLMLNGGGGSRKPASDEDILEPR
TGSPPLYGYGGDKGDLFEYYDAFGVHSQAMHEAVWKLDHLDKYNFHALVQ
VGKSTPKPAKWHPGPGGHLLRAQILAHHYLRLLDEAIISVLAALNGENTM
LKLETLLETTTPLEQDPTVNEFKLPPPLYCDDFFCGSPASCAMTFEPIAQ
GSLLELVVSPPEPKTAKPTIESQNNSVWHTQLITYDQNAVVNARNRGAQY
LDMKYVLQGNKYAGPLVLGVKTHKKHHMLFCQPPGSGQNQAPIGRNSSVL
VDGKDSPFELEDSFYLTHTIRAPCWATKHQLEPGNHTITITPTNADGKYI
SLSAVIWF
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mRNA from alignment at CM002461.1:886155..887231+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3652 ID=rna3652|Name=rna3652|organism=Nannochloropsis gaditana|type=mRNA|length=1077bp|location=Sequence derived from alignment at CM002461.1:886155..887231+ (Nannochloropsis gaditana)
ATGAGTGTCAGTGGGCCTCTCAAGAACGCTTACGTGGAGGAGTGGATGCG
AAATGCTTTGTACTTGCCGAAACGTCCCGCTCTCCTCATGCTTAACGGTG
GAGGGGGTTCTCGTAAGCCTGCTTCGGATGAAGACATTTTAGAGCCTCGT
ACAGGGTCTCCGCCTCTTTATGGCTATGGAGGAGATAAAGGTGATTTGTT
CGAGTATTATGATGCTTTTGGCGTGCATTCGCAAGCAATGCATGAGGCTG
TCTGGAAGCTGGATCACCTTGACAAATACAACTTTCATGCTTTGGTCCAG
GTTGGAAAATCGACGCCAAAACCTGCGAAATGGCATCCAGGTCCGGGTGG
ACACTTGCTTCGGGCTCAGATATTGGCACACCACTATCTGAGATTACTGG
ACGAAGCCATCATATCAGTGCTGGCAGCATTAAATGGAGAGAATACCATG
CTTAAATTGGAAACGCTTTTGGAAACGACGACTCCACTTGAGCAAGACCC
GACTGTGAACGAATTCAAGCTTCCACCCCCGTTGTATTGTGATGACTTCT
TTTGCGGGTCTCCAGCTTCATGCGCCATGACCTTTGAGCCGATCGCTCAA
GGGTCACTCTTAGAACTCGTCGTCTCCCCGCCGGAGCCGAAGACGGCAAA
GCCAACGATAGAGTCTCAAAACAACAGTGTGTGGCACACACAACTTATTA
CCTATGATCAGAATGCTGTCGTAAATGCCCGAAACCGTGGTGCTCAATAC
TTAGATATGAAATACGTGCTTCAGGGCAACAAGTATGCAGGGCCTTTAGT
GCTGGGAGTGAAAACGCATAAAAAGCACCACATGCTATTTTGCCAGCCGC
CGGGAAGCGGACAGAATCAAGCTCCTATAGGCCGCAATTCCAGCGTTCTC
GTCGATGGTAAAGACTCACCTTTCGAATTGGAAGACAGTTTTTACTTGAC
TCACACAATTCGAGCACCCTGCTGGGCCACAAAACATCAATTGGAGCCAG
GAAACCACACAATCACTATTACCCCCACAAATGCAGATGGAAAATATATA
AGCTTATCGGCAGTCATCTGGTTTTAG
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Coding sequence (CDS) from alignment at CM002461.1:886155..887231+

>rna3652 ID=rna3652|Name=rna3652|organism=Nannochloropsis gaditana|type=CDS|length=1077bp|location=Sequence derived from alignment at CM002461.1:886155..887231+ (Nannochloropsis gaditana)
ATGAGTGTCAGTGGGCCTCTCAAGAACGCTTACGTGGAGGAGTGGATGCG
AAATGCTTTGTACTTGCCGAAACGTCCCGCTCTCCTCATGCTTAACGGTG
GAGGGGGTTCTCGTAAGCCTGCTTCGGATGAAGACATTTTAGAGCCTCGT
ACAGGGTCTCCGCCTCTTTATGGCTATGGAGGAGATAAAGGTGATTTGTT
CGAGTATTATGATGCTTTTGGCGTGCATTCGCAAGCAATGCATGAGGCTG
TCTGGAAGCTGGATCACCTTGACAAATACAACTTTCATGCTTTGGTCCAG
GTTGGAAAATCGACGCCAAAACCTGCGAAATGGCATCCAGGTCCGGGTGG
ACACTTGCTTCGGGCTCAGATATTGGCACACCACTATCTGAGATTACTGG
ACGAAGCCATCATATCAGTGCTGGCAGCATTAAATGGAGAGAATACCATG
CTTAAATTGGAAACGCTTTTGGAAACGACGACTCCACTTGAGCAAGACCC
GACTGTGAACGAATTCAAGCTTCCACCCCCGTTGTATTGTGATGACTTCT
TTTGCGGGTCTCCAGCTTCATGCGCCATGACCTTTGAGCCGATCGCTCAA
GGGTCACTCTTAGAACTCGTCGTCTCCCCGCCGGAGCCGAAGACGGCAAA
GCCAACGATAGAGTCTCAAAACAACAGTGTGTGGCACACACAACTTATTA
CCTATGATCAGAATGCTGTCGTAAATGCCCGAAACCGTGGTGCTCAATAC
TTAGATATGAAATACGTGCTTCAGGGCAACAAGTATGCAGGGCCTTTAGT
GCTGGGAGTGAAAACGCATAAAAAGCACCACATGCTATTTTGCCAGCCGC
CGGGAAGCGGACAGAATCAAGCTCCTATAGGCCGCAATTCCAGCGTTCTC
GTCGATGGTAAAGACTCACCTTTCGAATTGGAAGACAGTTTTTACTTGAC
TCACACAATTCGAGCACCCTGCTGGGCCACAAAACATCAATTGGAGCCAG
GAAACCACACAATCACTATTACCCCCACAAATGCAGATGGAAAATATATA
AGCTTATCGGCAGTCATCTGGTTTTAG
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Synonyms
Publications