EWM27034.1, cds3643 (CDS) Nannochloropsis gaditana

Overview
NameEWM27034.1
Unique Namecds3643
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:886155..887231 +

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Properties
Property NameValue
Protein idEWM27034.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100056g3.10447.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:886155..887231 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27034.1 vs. NCBI_GenBank
Match: gi|585109208|gb|EWM27034.1| (hypothetical protein Naga_100056g3 [Nannochloropsis gaditana])

HSP 1 Score: 745.732 bits (1924), Expect = 0.000e+0
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0
Query:    1 MSVSGPLKNAYVEEWMRNALYLPKRPALLMLNGGGGSRKPASDEDILEPRTGSPPLYGYGGDKGDLFEYYDAFGVHSQAMHEAVWKLDHLDKYNFHALVQVGKSTPKPAKWHPGPGGHLLRAQILAHHYLRLLDEAIISVLAALNGENTMLKLETLLETTTPLEQDPTVNEFKLPPPLYCDDFFCGSPASCAMTFEPIAQGSLLELVVSPPEPKTAKPTIESQNNSVWHTQLITYDQNAVVNARNRGAQYLDMKYVLQGNKYAGPLVLGVKTHKKHHMLFCQPPGSGQNQAPIGRNSSVLVDGKDSPFELEDSFYLTHTIRAPCWATKHQLEPGNHTITITPTNADGKYISLSAVIWF 358
            MSVSGPLKNAYVEEWMRNALYLPKRPALLMLNGGGGSRKPASDEDILEPRTGSPPLYGYGGDKGDLFEYYDAFGVHSQAMHEAVWKLDHLDKYNFHALVQVGKSTPKPAKWHPGPGGHLLRAQILAHHYLRLLDEAIISVLAALNGENTMLKLETLLETTTPLEQDPTVNEFKLPPPLYCDDFFCGSPASCAMTFEPIAQGSLLELVVSPPEPKTAKPTIESQNNSVWHTQLITYDQNAVVNARNRGAQYLDMKYVLQGNKYAGPLVLGVKTHKKHHMLFCQPPGSGQNQAPIGRNSSVLVDGKDSPFELEDSFYLTHTIRAPCWATKHQLEPGNHTITITPTNADGKYISLSAVIWF
Sbjct:    1 MSVSGPLKNAYVEEWMRNALYLPKRPALLMLNGGGGSRKPASDEDILEPRTGSPPLYGYGGDKGDLFEYYDAFGVHSQAMHEAVWKLDHLDKYNFHALVQVGKSTPKPAKWHPGPGGHLLRAQILAHHYLRLLDEAIISVLAALNGENTMLKLETLLETTTPLEQDPTVNEFKLPPPLYCDDFFCGSPASCAMTFEPIAQGSLLELVVSPPEPKTAKPTIESQNNSVWHTQLITYDQNAVVNARNRGAQYLDMKYVLQGNKYAGPLVLGVKTHKKHHMLFCQPPGSGQNQAPIGRNSSVLVDGKDSPFELEDSFYLTHTIRAPCWATKHQLEPGNHTITITPTNADGKYISLSAVIWF 358          
BLAST of EWM27034.1 vs. NCBI_GenBank
Match: gi|585109227|gb|EWM27053.1| (hypothetical protein Naga_100056g2 [Nannochloropsis gaditana])

HSP 1 Score: 438.728 bits (1127), Expect = 8.871e-147
Identity = 221/377 (58.62%), Postives = 272/377 (72.15%), Query Frame = 0
Query:    1 MSVSGPLKNAYVEEWMRNALYLPKRPALLMLNGGGGSRKPASDEDI-LEPRTGSPPLYGYGGDKGDLFEYYDAFGVHSQAMHEAVWKLDHLDKYNFHALVQVGKSTPKPAKWHPGPGGHLLRAQILAHHYLRLLDEAIISV-------------LAALNGENTMLKLETLLETTTPLEQDPTVNEFKLPPPLYCDDFFCGSPASCAMTFEPIAQGSLLELVVSPPEPKTAKPTIESQNNSVWHTQLITYDQNAVVNARNRGAQYLDMKYVLQGNKYAGPLVLGVKTHKKHHMLFCQPPGS-GQNQAPIG---RNSSVLVDGKDSPFELEDSFYLTHTIRAP-CWATKHQLEPGNHTITITPTNADGKYISLSAVIWF 358
            M VSGPLKNAYVEEWMRNALYLPKRPALLMLNGG G+R+P ++  + ++ RTG PP + YGGDKGDLFEYYDAFGVHSQAMHEAVWKLDHLDKYNFHALVQ GK TPKPAKWHPGPGGHLLRAQILAHHYLRLLD+AI+ V             +  ++G ++ ++ +  + T +   ++       LPPPLYCD FFCGSPASCAMTFEP  QGSLL+LV+SP   ++ KPT+E Q   +WH QL   D +AVV ++ +G QYLDMKYVLQGN  AGPL L VK+  ++H+ FCQPP   G   A  G    ++ V +D K        S Y   + + P CW ++ +++PG+H ITITPTN+DG Y++LSA+IWF
Sbjct:  283 MMVSGPLKNAYVEEWMRNALYLPKRPALLMLNGGEGAREPDAEGALPVDARTGPPPPFSYGGDKGDLFEYYDAFGVHSQAMHEAVWKLDHLDKYNFHALVQAGKPTPKPAKWHPGPGGHLLRAQILAHHYLRLLDDAIVVVQETFSETGQDNPTIDIIDGADSAVRKD--MGTYSAGIENVEDATLGLPPPLYCDHFFCGSPASCAMTFEPKEQGSLLDLVLSPANLRSTKPTVEPQKPKLWHVQLYAADFDAVVFSKKQGFQYLDMKYVLQGNHKAGPLKLAVKSRSENHIFFCQPPKVWGHMPAHCGDLKDDAVVKIDEKRVSMVKSSSLYDKESSQPPNCWISEWKVKPGSHVITITPTNSDGSYVALSALIWF 657          
BLAST of EWM27034.1 vs. NCBI_GenBank
Match: gi|298709904|emb|CBJ26244.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.707 bits (169), Expect = 1.646e-9
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 0
Query:   10 AYVEEWMRNALYLPKRPALLMLNGGGGSRKPASDEDILEPRTGSPPLYGY-GGDKGDLFEYYDAFGVHSQAMHEAVWKLDHL---DKYNFHALVQVGKSTPKPAKWHPGPGGHLLRAQILAHHYLRLLDEAI 137
            A VE ++R++L LP+RPA+L+L+           E +L+ R       GY  G K +L E Y  FGVH+  +  +   L+H    +++    L   GK  P+P KWHP P GH L A +L  HY +L  EAI
Sbjct:   60 AAVELFVRSSLVLPRRPAILVLDAQADQGAKGRLE-LLKHRNRR--FLGYCNGPKRNLMEAYRDFGVHN--IFASSLILEHAAGDERFAHEILYAAGKHYPRPMKWHPAPAGHELVADMLFMHYGKLFLEAI 186          
The following BLAST results are available for this feature:
BLAST of EWM27034.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585109208|gb|EWM27034.1|0.000e+0100.00hypothetical protein Naga_100056g3 [Nannochloropsi... [more]
gi|585109227|gb|EWM27053.1|8.871e-14758.62hypothetical protein Naga_100056g2 [Nannochloropsi... [more]
gi|298709904|emb|CBJ26244.1|1.646e-937.12conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3652rna3652Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications