rna3651, rna3651 (mRNA) Nannochloropsis gaditana

Overview
Namerna3651
Unique Namerna3651
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1555
Alignment locationCM002461.1:885333..886118 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100056g4.10467.mrna
Orig protein idgnl|cribi|Naga_100056g4.10467
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:885333..886118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100056g4gene3517Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3651rna3651-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27054.1cds3642Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3651 ID=rna3651|Name=rna3651|organism=Nannochloropsis gaditana|type=mRNA|length=1555bp
AACATAATGTCCATATTTTCTGAGCAATCCAAACTCAAATCTTGACATAT
AATTACTTGTCTGAATTTCTCCGGATTCACGACAGTTTTTGCTTAGCTGA
AAAATTCCCTGTCATTGCATTTCCTCTAGTACAAGCAGCCCGGGCTTTGC
TTCCACATAAACCTCTCGCAGGTGCGCTCATGCCGCGACCTTCCCAGCAC
CTGTCAACCTGCTCGCCATCGTGGCTGTCTCCTAACTCAAGACTTAAACA
AATTACTGCCAAACGCGTCTTTTTGGCAACTTTCATCATTGCCACTCTGG
CTTGGGGTTTGGGCTTGGCTGCTGTTCTCCTGCCGGAGTGGACCGTAGAG
GATGCAAACGTTCAGAGCACCTTAGATGCTCACATAGGGCTTTTTGAGAC
AATATATCATGTTGGAGAAGTTCGAGAATCATCAACTCCTCGTTTTTGTA
ATGGTCTAGGTCCCATGTATTCAACGGAAAAATGTGTTTGGTGGCGAATT
TCGCAAATAACAGCTTTGTTGAGCTTGGGCATGGGATATACTGGCGTCCT
GCTACTCTTTCTGGTTATAGGGAGCTCATGGATCCGCCCGCAGCATGTTT
ATAGTCTTGCGGCTTGGGTCTGGAACATCTTCCTCTTTGCTGGAGTCTGC
GGTATCGGCAGTGCGGCTGCCTGGAATCTTCTGGTTCTCGCTTTCCTTCG
TGACCACCGCGAGCTCCAGGATGGCTACTCTGTTCATATGGGGCTCTCTA
TGTTTGTGATGGCAGCAATGGGAGCCGTCTTTATTTCGCTGCCATTGTGG
CGCATGGTATTTGAGCGTTGTATCCTGACTTGGAGTAGCAGTTCCGGTAC
TTTAGCTGGCCGGATGTGGCCCTTTGCGACCCGAAATGCGAGCCTGGAAA
GCGCGGGGTCGAGCAAAATTCAGAGTGGCAATTTTCCAGGGCATAAGAGT
GGTCAAGGAAGTGGAAGTGGTTGCGCTCGCACTGGCAATGCCCTCGTCAA
CGAGGAAGAAGGCGTCGTCGAAGCGAAAAGCAGCAGAGGCTGTGCGGGGG
CCCGTTCCCCTAGGCGTGGCGTGGCCTCATACTGTGGAGGAAATCAACCC
AATATCCTAGAGACATGGAATTCACAGGAGATTCGACATTTGAACGAGTG
TGGAAAGGTGGCGGGAAGCCAGAGTGCGGGCATGGGGGAGGGGAAAGAGA
CAAGCGAGATCGGGTTGGAGGAGGGAAATACGTTCATGGGTATCACAAGT
CCATTGTCACAGTAATAGCTAGGCACAAAACTGTAAACCAGAAAATTGGA
GAAGACGTGATGGCTCGATGTAAAATAAAAAGGAAGATGTGAGGCATGTA
TGTGTGAGAGAACTAAGTATACGTTCTTCATATCGCCGCCTCGGTCGCGG
TCGCTCTTCCAGGGAGAGCAACAGACATTTGACAAAGAGTCCAAAAAGCT
TGTCAAAAGTCATATTTGTAAGTCATCATGTAACGTAACGTCAAACGGAA
CTTCAGCCCCTCTTCCGTTCCTTGCGCCATCCCTGAGCCGAGCCCCATGC
CTCCC
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protein sequence of rna3651

>rna3651-protein ID=rna3651-protein|Name=rna3651|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSL
RRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEE
NEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKA
LQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFI
MSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNP
AIPAAFCVRSQ
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mRNA from alignment at CM002461.1:885333..886118+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3651 ID=rna3651|Name=rna3651|organism=Nannochloropsis gaditana|type=mRNA|length=786bp|location=Sequence derived from alignment at CM002461.1:885333..886118+ (Nannochloropsis gaditana)
ATGGGAGAGAATCATGCAAACGATTGTCACTATCTGATGAAaggagacga
cgaggagactTGTATCGATGGGCTCAACACGTCAAATAAGCACCAGAACG
AGGAAttttggagaaagaaaaccAGCCGATGGGACGAGGGAAGCTCACTG
CGCCGCATGCTCAAGGTGTTCATCTTTGTGATCGGGCTCCTCTTCGTAAC
GAATCTGGTCTATCAACAAACAAAAGAAAACAGTAAGAAATCGGATGATC
TTAGCCTGGCTACAATCCAGCATGGAGAGAGCTCGAGCGCAGACGAGGAA
AATGAGGTTGCCGCAGCTGCCGAAGATGAGGGTTTGCATCAAGAAACATC
CAGCAACGGGAACAAGGCAGATCTTATTCAGATGAGTGTGGCAAATGACA
CCGCCAAGATGTTGACTGCTCGGCAAACCATCGCCTCTGCCCTTAAGGCG
CTTCAAAAAGATGTAGGGCCCGAGTATGCTTCGGAGCTGTTTGGGTCAGT
ACGTTTTTGGAACAGGAGGTATATCAAGCAGAAGCTGATTCGCGCTCTGC
TGGGTCAGAACGGCTGTCCGGGCAAGGCCCAGAGTGACCACGACTTCATC
ATGTCTTTCGCAGGGACCTCTGTGACGGCTGGGCACGACAATTACTTCAA
TCAGTCCTATCCGATTGTTCTAGAAAGGCTTTTGCTCGACTCGTACACTG
CTGCAGGATTGAATCTGGAAGTTCGGAATCATGCCATGGGGTTCAACCCT
GCCATTCCCGCGGCATTCTGTGTGAGGAGCCAATAA
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Coding sequence (CDS) from alignment at CM002461.1:885333..886118+

>rna3651 ID=rna3651|Name=rna3651|organism=Nannochloropsis gaditana|type=CDS|length=786bp|location=Sequence derived from alignment at CM002461.1:885333..886118+ (Nannochloropsis gaditana)
ATGGGAGAGAATCATGCAAACGATTGTCACTATCTGATGAAaggagacga
cgaggagactTGTATCGATGGGCTCAACACGTCAAATAAGCACCAGAACG
AGGAAttttggagaaagaaaaccAGCCGATGGGACGAGGGAAGCTCACTG
CGCCGCATGCTCAAGGTGTTCATCTTTGTGATCGGGCTCCTCTTCGTAAC
GAATCTGGTCTATCAACAAACAAAAGAAAACAGTAAGAAATCGGATGATC
TTAGCCTGGCTACAATCCAGCATGGAGAGAGCTCGAGCGCAGACGAGGAA
AATGAGGTTGCCGCAGCTGCCGAAGATGAGGGTTTGCATCAAGAAACATC
CAGCAACGGGAACAAGGCAGATCTTATTCAGATGAGTGTGGCAAATGACA
CCGCCAAGATGTTGACTGCTCGGCAAACCATCGCCTCTGCCCTTAAGGCG
CTTCAAAAAGATGTAGGGCCCGAGTATGCTTCGGAGCTGTTTGGGTCAGT
ACGTTTTTGGAACAGGAGGTATATCAAGCAGAAGCTGATTCGCGCTCTGC
TGGGTCAGAACGGCTGTCCGGGCAAGGCCCAGAGTGACCACGACTTCATC
ATGTCTTTCGCAGGGACCTCTGTGACGGCTGGGCACGACAATTACTTCAA
TCAGTCCTATCCGATTGTTCTAGAAAGGCTTTTGCTCGACTCGTACACTG
CTGCAGGATTGAATCTGGAAGTTCGGAATCATGCCATGGGGTTCAACCCT
GCCATTCCCGCGGCATTCTGTGTGAGGAGCCAATAA
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Synonyms
Publications