EWM27054.1, cds3642 (CDS) Nannochloropsis gaditana

Overview
NameEWM27054.1
Unique Namecds3642
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:885333..886118 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27054.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100056g4.10467.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:885333..886118 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|585109228|gb|EWM27054.1| (hypothetical protein Naga_100056g4 [Nannochloropsis gaditana])

HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query:    1 MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCVRSQ 261
            MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCVRSQ
Sbjct:    1 MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCVRSQ 261          
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|585109227|gb|EWM27053.1| (hypothetical protein Naga_100056g2 [Nannochloropsis gaditana])

HSP 1 Score: 459.914 bits (1182), Expect = 9.204e-157
Identity = 239/254 (94.09%), Postives = 245/254 (96.46%), Query Frame = 0
Query:    8 DCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCVRSQ 261
            D H+L++ DDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFV  LLFVTNLVY+   ++SKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNR YIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMG NPAIPAAFCVRSQ
Sbjct:   18 DRHHLLQRDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVTVLLFVTNLVYE--TQSSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRSYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGNNPAIPAAFCVRSQ 269          
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|553184431|ref|XP_005854088.1| (hypothetical protein NGA_0451600 [Nannochloropsis gaditana CCMP526] >gi|422294974|gb|EKU22273.1| hypothetical protein NGA_0451600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 398.282 bits (1022), Expect = 3.864e-139
Identity = 192/201 (95.52%), Postives = 196/201 (97.51%), Query Frame = 0
Query:    1 MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIM 201
            MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFV  LLFVTNLVY+   ++SKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFI+
Sbjct:    1 MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVTVLLFVTNLVYE--TQSSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFII 199          
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|553176730|ref|XP_005852396.1| (hypothetical protein NGA_0710300, partial [Nannochloropsis gaditana CCMP526] >gi|422296137|gb|EKU23436.1| hypothetical protein NGA_0710300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 119.398 bits (298), Expect = 4.476e-31
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0
Query:    8 DCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNL 69
            D H+L++ DDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFV  LLFVTNL
Sbjct:   18 DRHHLLQRDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVTVLLFVTNL 79          
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|223998254|ref|XP_002288800.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975908|gb|EED94236.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 69.707 bits (169), Expect = 7.304e-10
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0
Query:  199 FIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCV 258
            F +SF G SVTAG  NYF+QSYP VLERL+       G+ L+VRN A+G  P+ P  +C+
Sbjct:  184 FKVSFGGYSVTAGRGNYFHQSYPFVLERLITQPMKLLGIELQVRNAAIGGVPSFPYGWCL 243          
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|219125162|ref|XP_002182856.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405650|gb|EEC45592.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 65.0846 bits (157), Expect = 2.090e-8
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 0
Query:  143 TIASALKALQKDVGPEYASELF--GSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAA-GLNLEVRNHAMGFNPAIPAAFC 257
            T+ +   A ++  GP  AS ++  G   F N R    +L+ A          A  D  F+++FAG SVT G  N+F QS+P VLER+L      +  L++ VRN A+G  P+ P  FC
Sbjct:   83 TVQAVRDAFRQRYGPTSAS-IYEKGVSTFGNLRATADRLLLA----------AAQDRPFVLAFAGYSVTVGRGNHFQQSFPFVLERILRPLLRESLQLDVVVRNAAIGGIPSFPYGFC 189          
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|397616288|gb|EJK63912.1| (hypothetical protein THAOC_15402 [Thalassiosira oceanica])

HSP 1 Score: 63.929 bits (154), Expect = 5.026e-8
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 0
Query:  178 KLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAA--GLNLEVRNHAMGFNPAIPAAFCV 258
            +L+R+++     PG   +   F+MSFAG SVT G  N+++QSYP V+E ++      A  G+ L VRN A+G  P+ P  +C+
Sbjct:  186 RLLRSIVEHESSPG--SNGAKFVMSFAGYSVTVGRGNHWSQSYPFVMEGIIKPILEMAPLGIELTVRNSAIGGIPSFPYGWCL 266          
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|397632957|gb|EJK70769.1| (hypothetical protein THAOC_07846 [Thalassiosira oceanica])

HSP 1 Score: 63.929 bits (154), Expect = 5.044e-8
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 0
Query:  178 KLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLL--LDSYTAAGLNLEVRNHAMGFNPAIPAAFCV 258
            +L+R+++     PG   +   F+MSFAG SVT G  N+++QSYP V+E ++  +      G+ L VRN A+G  P+ P  +C+
Sbjct:  234 RLLRSIVEHESSPG--SNGAKFVMSFAGYSVTVGRGNHWSQSYPFVMEGIIKPILEMAPLGIELTVRNSAIGGIPSFPYGWCL 314          
The following BLAST results are available for this feature:
BLAST of EWM27054.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585109228|gb|EWM27054.1|0.000e+0100.00hypothetical protein Naga_100056g4 [Nannochloropsi... [more]
gi|585109227|gb|EWM27053.1|9.204e-15794.09hypothetical protein Naga_100056g2 [Nannochloropsi... [more]
gi|553184431|ref|XP_005854088.1|3.864e-13995.52hypothetical protein NGA_0451600 [Nannochloropsis ... [more]
gi|553176730|ref|XP_005852396.1|4.476e-3188.71hypothetical protein NGA_0710300, partial [Nannoch... [more]
gi|223998254|ref|XP_002288800.1|7.304e-1051.67predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219125162|ref|XP_002182856.1|2.090e-835.59predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397616288|gb|EJK63912.1|5.026e-838.55hypothetical protein THAOC_15402 [Thalassiosira oc... [more]
gi|397632957|gb|EJK70769.1|5.044e-837.35hypothetical protein THAOC_07846 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3651rna3651Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications