EWM27054.1, cds3642 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|585109228|gb|EWM27054.1| (hypothetical protein Naga_100056g4 [Nannochloropsis gaditana]) HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query: 1 MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCVRSQ 261
MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCVRSQ
Sbjct: 1 MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCVRSQ 261
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|585109227|gb|EWM27053.1| (hypothetical protein Naga_100056g2 [Nannochloropsis gaditana]) HSP 1 Score: 459.914 bits (1182), Expect = 9.204e-157 Identity = 239/254 (94.09%), Postives = 245/254 (96.46%), Query Frame = 0
Query: 8 DCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCVRSQ 261
D H+L++ DDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFV LLFVTNLVY+ ++SKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNR YIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMG NPAIPAAFCVRSQ
Sbjct: 18 DRHHLLQRDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVTVLLFVTNLVYE--TQSSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRSYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGNNPAIPAAFCVRSQ 269
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|553184431|ref|XP_005854088.1| (hypothetical protein NGA_0451600 [Nannochloropsis gaditana CCMP526] >gi|422294974|gb|EKU22273.1| hypothetical protein NGA_0451600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 398.282 bits (1022), Expect = 3.864e-139 Identity = 192/201 (95.52%), Postives = 196/201 (97.51%), Query Frame = 0
Query: 1 MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNLVYQQTKENSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIM 201
MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFV LLFVTNLVY+ ++SKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFI+
Sbjct: 1 MGENHANDCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVTVLLFVTNLVYE--TQSSKKSDDLSLATIQHGESSSADEENEVAAAAEDEGLHQETSSNGNKADLIQMSVANDTAKMLTARQTIASALKALQKDVGPEYASELFGSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFII 199
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|553176730|ref|XP_005852396.1| (hypothetical protein NGA_0710300, partial [Nannochloropsis gaditana CCMP526] >gi|422296137|gb|EKU23436.1| hypothetical protein NGA_0710300, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 119.398 bits (298), Expect = 4.476e-31 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0
Query: 8 DCHYLMKGDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVIGLLFVTNL 69
D H+L++ DDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFV LLFVTNL
Sbjct: 18 DRHHLLQRDDEETCIDGLNTSNKHQNEEFWRKKTSRWDEGSSLRRMLKVFIFVTVLLFVTNL 79
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|223998254|ref|XP_002288800.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975908|gb|EED94236.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 69.707 bits (169), Expect = 7.304e-10 Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0
Query: 199 FIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAAGLNLEVRNHAMGFNPAIPAAFCV 258
F +SF G SVTAG NYF+QSYP VLERL+ G+ L+VRN A+G P+ P +C+
Sbjct: 184 FKVSFGGYSVTAGRGNYFHQSYPFVLERLITQPMKLLGIELQVRNAAIGGVPSFPYGWCL 243
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|219125162|ref|XP_002182856.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405650|gb|EEC45592.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 65.0846 bits (157), Expect = 2.090e-8 Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 0
Query: 143 TIASALKALQKDVGPEYASELF--GSVRFWNRRYIKQKLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAA-GLNLEVRNHAMGFNPAIPAAFC 257
T+ + A ++ GP AS ++ G F N R +L+ A A D F+++FAG SVT G N+F QS+P VLER+L + L++ VRN A+G P+ P FC
Sbjct: 83 TVQAVRDAFRQRYGPTSAS-IYEKGVSTFGNLRATADRLLLA----------AAQDRPFVLAFAGYSVTVGRGNHFQQSFPFVLERILRPLLRESLQLDVVVRNAAIGGIPSFPYGFC 189
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|397616288|gb|EJK63912.1| (hypothetical protein THAOC_15402 [Thalassiosira oceanica]) HSP 1 Score: 63.929 bits (154), Expect = 5.026e-8 Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 0
Query: 178 KLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLLLDSYTAA--GLNLEVRNHAMGFNPAIPAAFCV 258
+L+R+++ PG + F+MSFAG SVT G N+++QSYP V+E ++ A G+ L VRN A+G P+ P +C+
Sbjct: 186 RLLRSIVEHESSPG--SNGAKFVMSFAGYSVTVGRGNHWSQSYPFVMEGIIKPILEMAPLGIELTVRNSAIGGIPSFPYGWCL 266
BLAST of EWM27054.1 vs. NCBI_GenBank
Match: gi|397632957|gb|EJK70769.1| (hypothetical protein THAOC_07846 [Thalassiosira oceanica]) HSP 1 Score: 63.929 bits (154), Expect = 5.044e-8 Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 0
Query: 178 KLIRALLGQNGCPGKAQSDHDFIMSFAGTSVTAGHDNYFNQSYPIVLERLL--LDSYTAAGLNLEVRNHAMGFNPAIPAAFCV 258
+L+R+++ PG + F+MSFAG SVT G N+++QSYP V+E ++ + G+ L VRN A+G P+ P +C+
Sbjct: 234 RLLRSIVEHESSPG--SNGAKFVMSFAGYSVTVGRGNHWSQSYPFVMEGIIKPILEMAPLGIELTVRNSAIGGIPSFPYGWCL 314 The following BLAST results are available for this feature:
BLAST of EWM27054.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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