rna365, rna365 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna365
Unique Name	rna365
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3165
Alignment location	CM002455.1:887765..889031 -

Link to JBrowse

Properties


Property Name	Value
Product	prefoldin subunit 2
Orig transcript id	gnl\|cribi\|Naga_100003g131.1862.mrna
Orig protein id	gnl\|cribi\|Naga_100003g131.1862
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:887765..889031 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g131	gene352	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna365	rna365-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30345.1	cds365	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:887765..889031-
coding sequence from alignment at CM002455.1:887765..889031-

mRNA sequence

>rna365 ID=rna365|Name=rna365|organism=Nannochloropsis gaditana|type=mRNA|length=3165bp
ATAGGGAGCGAAGACTCCAACAAAGAAGATAACGAGGCGTGGCTTTATCA
CACCATAGGCAGTATCACGTGTTTTCTTGGTGTTGTGTACCTTCCGCTAT
GATGATTTCCAAATTTCTTATAGAATCCTCCTGAAGCATCAGCCAGGGCG
TGTCAATTCACGATGATTTCGATACCTCTCGAAAAATGAGTGTCCTTTTC
CTTGGGAATAGCTGGATTCAGGCAGCATAGAATGTGAACTATTGACCGAA
TTGCCTATGCTTTCGGAGTCGGGAGCATTCATATTTTGCTTGGTACCTCC
CAGAGAGATTGCTCAACTCCGCATTACATACATCATTCTTAAAAAAGTTC
TACCTGATATTCAATGCACAAATAGGTGCCAGCTCAAAGTGCAGCAGTTT
CAGTCTCACGACTGCCCAATCATTGCATTGTAGTAATTTGTTGGCGTAAC
GCTGGTCATAAGCAATACGTGTAGTACATTACTTGGCCACGCATCGCTAC
TGATCTCGGTCGGTACGAATCACATGATCTTGAGAAAATCTGATGAAAAC
TCGACTGCAGGTTGTGGCAATAGCAGCGCTACGTACGTTTTGTCTCAAAA
TTCTGATAGGCGCCTGTCTTGTGCATTGTGGTCTCAATCCAATGCTGGGC
AAGGGATATGTAGCGCACAGGACAGAGTGGAGGGTTTATGTCCGCCGTCT
TCATCCCAGGTCCACGTGGCCACGAGGCATCGGTCACCTCCCTTCCTTCC
CTGTGCATGGAAAAAGCCTTCCAGTCATACTCTTCTTGCGGTCCTTATTT
TGCTCGCGGTGGAGACTGCTCCTTCGAGTGGGCAGTCAGCTCCCCCAACC
TTTGCTTGCTACCCTCCCCACCTGCATCACCGCGTCTCTCCGATATGCCG
ACATTTAGTCAGGCACTGTGGCCCGAGCAGACCAATTCGCTGGTCAAGCA
TGCGTATTGATTGGTTTTCCGGCCCCAAGATTGCCGAGCCAGTACCTCGT
AAAGGAGCTCTGTCGTCGCTTGTGCTAGATCCTGTGCGACGGGCCGTGGA
ACTCTTCCCAAACTCAAAAGGGGTCATTGATCAGGTTTGGACAATGCTGC
CATTGGCTCTTCGGGCGCTTATTAATCCGTCTGATTTGCTTTTATTCGTC
ACGACACGTCTACTGTACCGCAAAGCTTGCAGGGCTCTTCATGCCTTTCA
CCACTTCTTGTGGAAGCGTGCGGGAATCATGGACGAGCCGCGTGTGTACG
AAGATTCCGTACTGGGCTTCATGGAGCCTAAATTGGGAACTTTGACGTCT
TTTATCGGCGTCACGTATGTTATAAATGTGGTGCTCTCTTTGCTGATCGA
TATTGGCTGGCGAGTGAGAGCCGACTCTGCACGACTTATGGCGTCGCTTT
TGTACATTGCGTACGGGGCATATTTTGTTAACGAGGTCAAAAAGGAATAT
TTGACGACATGGGTACCATCTTTGCAAGAAGATCGGCGCCGCTCCTACAT
AATCGACCGTTCTTCATCGGTAGTACTCTGGATATTGGCGATCTTCTCCT
GTATTGAGTGCATCTCAGCTTTTCTCAAGATTCCTCTCTCGTCCACGCTA
GCTTTTGGAGGGATCGGGGGTCTTGCATTTGGGTTAGCATCTAAAGACGT
GGTGAGCAATTTTTTTGGGGGAGTCATGCTTCTTTTCACGGAGCCGTTCA
CGCCAGGAGATATGGTCTCTTTCACAACGCGCGGCACGCACTACGAGGGA
AAGGTAGAGCGCGTCGGTTTCTACCAAACCCGGCTGAGGGGTCGTGACAC
GCGACCTACGTACGTCCCTAATTCGGTTTTCGTGGATACAATGGTCACGA
ATATGGACAGAATCACGCACAGACGCTTTGAGGCCTCCTTCTCGCTGCGC
TTTCAGGACTTCGAGACCTTACCGGAAGTTATTTTGGAGATCAAGAAAGC
GCTGCGTGTGCTGCCCAAGGTTGACGTATTATCGCCCTTTCGTGTACATT
TCACACAGTTTGGATCGTACTGCTTGAGCCTGACAGCCTCATGTTATTTT
GCAACCAAGAGTTTGGACGAATACTTGTATTTGCAGCAGTTGGCGCTCAT
GGAGATCACACGCGTGGTAACCGAGTGTGGATGTCGTTTCGCGTACCCAA
CTACCCATCTCGATCTTGTCTCCAAGGAACTGGGCCAGAGTCTGATTACC
GGCGTCGTTGACTATCAGAACGAGCTCGAGCAGGTGGCTGCCAGTGGCGG
TGGCGGTGGGGACAGAGGCAGCAATACCAACAACGCTGACTCCATGAAGG
GGGCTGGACAGCAGGGGGACTTCTCTGTGGGATTCAATGTTCCGCCAAAC
CCTATCAACCCCTTGAACAGCGGGGGCGGGAATAGCGTGCCAGGACCTGG
GGAAGACAACTCCGGGAGTCCAGGACCGCGGCCCACACGTGGAGTGCGAG
TGATGCAAAATATGCGTGCGGACGACGACAATGTTATGACTACCAGCGTC
ATGCCAGGTCCGCCCTTTCCCCCTCCCCCGCCACCGTCTTCAACACAGCA
TTCATCCCAATCCTCTTCAGTGCCCGAAAATTCGTCTCGCGGTCCTTTCC
CCCCGCCAGTAAGCGCCGCTTCACCCTCGGGACCCTATGCGGATCTATCA
CAGGACGCCGTGGTAGCATGAGATAGTTGCCTCTATGAGAAGGGAGGGGT
TCACTATGCTACCCATGTATTTCATTTTCCATGTAATTATCATATAAAGA
TGTCATTCTATTCGTGAAGCACGCAAGCCGCTCTTGTGTCGAACTATTGT
TCTTGACACTTCGTTGGAGCGGAACCCTCTGTCCTTCCCGGGGCCTTCTT
CAGACCAAGGTTACACGAGTTGTCTGAACGTCTCTGGTTCGACCAACTGT
TGAGTCTGAACGTCTCTGGTTCGACCAACTGTTGAGCTCTTTTTGCCGAC
TTTTACAGCTTTCTGACGTGTCGATCAAAGAATAAAGACATGCGATCACT
TTATTACGTAACCATGGAACACATGTAGATTGACGCACCGCTGCAATGAA
TGAAAATTTCTTTCGGCCTCGAGACTGAAGTTTGCATGTACTGGCATATT
TGCTTCCCTTTCAGGTCGCATATTTAAAAGGACACCAAGAGAAAGCAGAA
TGGAGGCTATTAAGA

protein sequence of rna365

>rna365-protein ID=rna365-protein|Name=rna365|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MNFNGDAEATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQL
TPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKK
QKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVLA

mRNA from alignment at CM002455.1:887765..889031-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna365 ID=rna365|Name=rna365|organism=Nannochloropsis gaditana|type=mRNA|length=1267bp|location=Sequence derived from alignment at CM002455.1:887765..889031- (Nannochloropsis gaditana)
GCGCGTTCTCCCTGGTGGCCGGATTTAGCATGTCGCCGCCTCGCTCTTTC
TTCCCAGCCCTCCCAAACCCCACCGTGCCCCGTCCTTAATCTCCTCCCGG
TCTCAAGCGGATGTTGTCCGGAGCTATCGATGCGTACCGATCATAACTTT
TACACTCCCTGCCCGTCATCGCACCTTCTGCCCTTTATTTCTTCCTACCA
AACCAGTTCAATTCTATTTTTGGGGTGAATCCCCCTTATCCGCTTTCCTC
TTGTCCTTTTAATGCCCTGTCTTTGATCATCTTAGTCATATTCCACCCTC
CGATCGCGCACATGCTACAGCCGCTTGTAAGGAAGATATGAATTTCAATG
GTGATGCAGAAGCTACAGATCCCAGTTCTATCATTCAGGTACACATCGGA
AATAGGAGACGAAGACATGTGCATGGAGTGCTGAAAAGTGCAATCCCTCC
ACTCACTAGTTTCCTCCTTATTTACTCAACTTAGACGTTCCAAAATCTGC
AAGGCGAATGTCAACAAGTACGTACATGTAACTGGGACGTTCTTGCGGGT
GACCCTCCCCGTGGTCTCGTTTCTCTCCGTTTTTACCCCTCTCTCCAATA
TTTTTCGACAAGACTTCTTTTCTTGGCCACACATCGAATAATTTGTCGCA
AGACAGAAATGTCACCATGGCTGATGGTTTAATCATTTTCTTGCCTCTTT
GTCGTTGACGAAGCATTAATTTTACCCTCATCTGTATCTTGCTTCATGTT
CAGATGACAACCAAGCTGCAAGAACTGGAAATGGAATTGAGCGAGCATGA
ACTGGTCATTCAACAACTAACCCCTTTGGAACCATCGCGCAAAGCATATC
GGCTATTGGGCGGTGTTCTAATGGAGCGCACGGTGGGGGAAGTGCTTCCG
GTTTTGTCTGAGTTCGCTTCAAAGTTGAGGACTTACATTCCTCAATTGGA
CGTGGCTCTTGCAAAAAAACAGAAGCAAACACGTGAATGGCGAGACAAGT
ACAACATTAGGGCGCAGAGTGCAAAGGAAATTGAGGCTTTGCAACAAAAA
AGCGCAGCTGGTGCACCTGGAGGCGCGACAGACTTATCGGCGGGGGGGGT
ACTGGCATAGGCTGATCGTGAATAAAAAGAAGAAAGTTAAGTTTATACTT
TCTTAATAGCCTCCATTCTGCTTTCTCTTGGTGTCCTTTTAAATATGCGA
CCTGAAAGGGAAGCAAATATGCCAGTACATGCAAACTTCAGTCTCGAGGC
CGAAAGAAATTTTCATT

Coding sequence (CDS) from alignment at CM002455.1:887765..889031-

>rna365 ID=rna365|Name=rna365|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at CM002455.1:887765..889031- (Nannochloropsis gaditana)
ATGACAACCAAGCTGCAAGAACTGGAAATGGAATTGAGCGAGCATGAACT
GGTCATTCAACAACTAACCCCTTTGGAACCATCGCGCAAAGCATATCGGC
TATTGGGCGGTGTTCTAATGGAGCGCACGGTGGGGGAAGTGCTTCCGGTT
TTGTCTGAGTTCGCTTCAAAGTTGAGGACTTACATTCCTCAATTGGACGT
GGCTCTTGCAAAAAAACAGAAGCAAACACGTGAATGGCGAGACAAGTACA
ACATTAGGGCGCAGAGTGCAAAGGAAATTGAGGCTTTGCAACAAAAAAGC
GCAGCTGGTGCACCTGGAGGCGCGACAGACTTATCGGCGGGGGGGGTACT
GGCATAGACGTTCCAAAATCTGCAAGGCGAATGTCAACAAATGAATTTCA
ATGGTGATGCAGAAGCTACAGATCCCAGTTCTATCATTCAGATGACAACC
AAGCTGCAAGAACTGGAAATGGAATTGAGCGAGCATGAACTGGTCATTCA
ACAACTAACCCCTTTGGAACCATCGCGCAAAGCATATCGGCTATTGGGCG
GTGTTCTAATGGAGCGCACGGTGGGGGAAGTGCTTCCGGTTTTGTCTGAG
TTCGCTTCAAAGTTGAGGACTTACATTCCTCAATTGGACGTGGCTCTTGC
AAAAAAACAGAAGCAAACACGTGAATGGCGAGACAAGTACAACATTAGGG
CGCAGAGTGCAAAGGAAATTGAGGCTTTGCAACAAAAAAGCGCAGCTGGT
GCACCTGGAGGCGCGACAGACTTATCGGCGGGGGGGGTACTGGCATAGAC
GTTCCAAAATCTGCAAGGCGAATGTCAACAAATGAATTTCAATGGTGATG
CAGAAGCTACAGATCCCAGTTCTATCATTCAGATGACAACCAAGCTGCAA
GAACTGGAAATGGAATTGAGCGAGCATGAACTGGTCATTCAACAACTAAC
CCCTTTGGAACCATCGCGCAAAGCATATCGGCTATTGGGCGGTGTTCTAA
TGGAGCGCACGGTGGGGGAAGTGCTTCCGGTTTTGTCTGAGTTCGCTTCA
AAGTTGAGGACTTACATTCCTCAATTGGACGTGGCTCTTGCAAAAAAACA
GAAGCAAACACGTGAATGGCGAGACAAGTACAACATTAGGGCGCAGAGTG
CAAAGGAAATTGAGGCTTTGCAACAAAAAAGCGCAGCTGGTGCACCTGGA
GGCGCGACAGACTTATCGGCGGGGGGGGTACTGGCATAGACGTTCCAAAA
TCTGCAAGGCGAATGTCAACAAATGAATTTCAATGGTGATGCAGAAGCTA
CAGATCCCAGTTCTATCATTCAG

Synonyms

Publications