EWM30345.1, cds365 (CDS) Nannochloropsis gaditana

Overview
NameEWM30345.1
Unique Namecds365
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:888644..888694 -
Alignment locationCM002455.1:888515..888547 -
Alignment locationCM002455.1:887922..888278 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30345.1
Productprefoldin subunit 2
Orig transcript idgnl|cribi|Naga_100003g131.1862.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:888644..888694 -
CM002455.1supercontigCM002455.1:888515..888547 -
CM002455.1supercontigCM002455.1:887922..888278 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
GO:0016272prefoldin complex
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0051082unfolded protein binding
Vocabulary: INTERPRO
TermDefinition
IPR027235PFD2
IPR002777PFD_beta-like
IPR009053Prefoldin
Homology
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|585113004|gb|EWM30345.1| (prefoldin subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 298.516 bits (763), Expect = 1.459e-102
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query:    1 MNFNGDAEATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVLA 146
            MNFNGDAEATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVLA
Sbjct:    1 MNFNGDAEATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVLA 146          
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|1211306391|ref|XP_021433504.1| (prefoldin subunit 2-like [Oncorhynchus mykiss])

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-26
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 0
Query:   10 TDPSS--IIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGG 143
            + PS+  ++  FQ ++ E + M +K  ELEME++EH LVI+ L  ++P+RK +RL+GGVL+ERTV EVLP L     ++   +  L+  +  K ++  E+R+KYNIR     E E  Q KSAA + GG    S GG
Sbjct:   21 SGPSAEQVVAAFQRMRSEQRSMASKAAELEMEINEHSLVIETLKDVDPTRKCFRLVGGVLVERTVKEVLPALESNKEQISKIVESLNTQMQSKGRELTEYREKYNIRL--VGEGEEGQGKSAASSNGGEGSASKGG 154          
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|255552175|ref|XP_002517132.1| (PREDICTED: probable prefoldin subunit 2 [Ricinus communis] >gi|223543767|gb|EEF45295.1| prefoldin subunit, putative [Ricinus communis])

HSP 1 Score: 105.916 bits (263), Expect = 2.003e-26
Identity = 54/141 (38.30%), Postives = 84/141 (59.57%), Query Frame = 0
Query:    5 GDAEATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVL 145
            GD E+ +  +++  +  ++ E  Q+ +K+ ELEME+SEH LVI  + PL+PSR+ YR++GGVL+ERT+ EVLP +      +   I +L+ AL KK+K   E+  KY IR +        + +S     GG  + S+ GVL
Sbjct:    7 GDHESINEQAVVNAYSGMRSELNQIYSKVTELEMEVSEHSLVINAIQPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKDGIEEVIARLNEALEKKKKDIAEFEAKYKIRIR--------KPESEVKDDGGKKEGSSQGVL 139          
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|1158885292|ref|XP_020346988.1| (prefoldin subunit 2-like isoform X2 [Oncorhynchus kisutch])

HSP 1 Score: 105.916 bits (263), Expect = 2.592e-26
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 0
Query:   10 TDPSS--IIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGG 143
            + PS+  ++  FQ ++ E + M +K  ELEME++EH LVI+ L  ++P+RK +RL+GGVL+ERTV EVLP L     ++   +  L+  +  K ++  E+R+KYNIR     E E  Q KSAA + GG    S GG
Sbjct:   21 SGPSAEQVVAAFQRMRTEQRSMASKAAELEMEINEHSLVIETLKDVDPTRKCFRLVGGVLVERTVKEVLPALESNKEQISKIVESLNTQMQSKGRELTEYREKYNIRL--VGEGEEGQGKSAASSNGGEGSASKGG 154          
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|213513175|ref|NP_001134472.1| (Prefoldin subunit 2 [Salmo salar] >gi|209733582|gb|ACI67660.1| Prefoldin subunit 2 [Salmo salar])

HSP 1 Score: 105.531 bits (262), Expect = 4.314e-26
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = 0
Query:   10 TDPSS--IIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGG 143
            + PS+  ++  FQ ++ E   M +K  ELEME++EH LVI+ L  ++P+RK +RL+GGVL+ERTV EVLP L     ++   +  L+  +  K ++  E+R+KYNIR     E E  Q KSAA + GG    S GG
Sbjct:   21 SGPSAEQVVAAFQRMRSEQCSMASKAAELEMEINEHSLVIETLKDVDPTRKCFRLVGGVLVERTVKEVLPALESNKEQISKIVESLNTQMQSKGRELTEYREKYNIRL--VGEGEEGQGKSAASSNGGEGSASKGG 154          
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|242078231|ref|XP_002443884.1| (probable prefoldin subunit 2 [Sorghum bicolor] >gi|1205970998|ref|XP_021320689.1| probable prefoldin subunit 2 [Sorghum bicolor])

HSP 1 Score: 105.145 bits (261), Expect = 4.445e-26
Identity = 58/142 (40.85%), Postives = 84/142 (59.15%), Query Frame = 0
Query:    5 GDA-EATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVL 145
            GD  EA +   +  T+ N++ E  Q+ TK+ ELEME+SEH LVI  + PL+PSR+ YR++GGVL+ERT+ EVLP +      L   I ++  AL +K+K+  E+  KY IR + A         + A   GG  + +A GVL
Sbjct:    7 GDGKEAINEQVVANTYTNMRTEMNQLYTKITELEMEVSEHSLVIGAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVKRNKEGLEEVIARMHEALERKKKEITEFELKYKIRIRKA--------NNDAKDEGGKKEGTAQGVL 140          
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|514759525|ref|XP_004964312.1| (PREDICTED: probable prefoldin subunit 2 [Setaria italica] >gi|514759529|ref|XP_004964313.1| PREDICTED: probable prefoldin subunit 2 [Setaria italica] >gi|944244675|gb|KQL08969.1| hypothetical protein SETIT_007441mg [Setaria italica] >gi|944244676|gb|KQL08970.1| hypothetical protein SETIT_007441mg [Setaria italica])

HSP 1 Score: 105.145 bits (261), Expect = 4.494e-26
Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = 0
Query:    4 NGDA-EATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVL 145
            +GD  EA +   I  T+ N++ E  Q+ TK+ ELEME+SEH LVI  + PL+PSR+ YR++GGVL+ERT+ EVLP +      L   I ++  AL +K+K+  E+  KY IR + A         + A   GG  + +A GVL
Sbjct:    6 SGDGKEALNEQVIANTYANMRTEMNQLYTKITELEMEVSEHSLVIGAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVKRNKEGLEEVIARMHEALERKKKEITEFELKYKIRIRKA--------DNNAEEEGGKKEGTAQGVL 140          
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|1049283084|ref|XP_017537959.1| (PREDICTED: prefoldin subunit 2 [Pygocentrus nattereri])

HSP 1 Score: 105.145 bits (261), Expect = 5.566e-26
Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = 0
Query:   12 PSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVL 145
            P  ++ TFQ ++ E + M +K  ELEME++EH LVI  L  ++PSRK YRL+GGVL+ERTV EVLP L     ++   I  L+  +  K ++  E+R++YNIR  S  + +     S A    G    S  GVL
Sbjct:   20 PEQVVATFQRMRQEQRSMASKAAELEMEINEHSLVIDTLKEVDPSRKCYRLVGGVLVERTVKEVLPALENNKEQISKIIESLNTQMQAKGRELTEYRERYNIRLVSEDDKQGKGNTSQAKESEGGGSKSGAGVL 153          
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|242071401|ref|XP_002450977.1| (probable prefoldin subunit 2 [Sorghum bicolor] >gi|241936820|gb|EES09965.1| hypothetical protein SORBI_3005G157200 [Sorghum bicolor])

HSP 1 Score: 104.76 bits (260), Expect = 5.825e-26
Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = 0
Query:    5 GDA-EATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVL 145
            GD  EA +   I  T+ N++ E  Q+ TK+ ELEME+SEH LVI  + PL+PSR+ YR++GGVL+ERT+ EVLP +      L   I ++  AL +K+K+  E+  KY IR + A         + A   GG  + +A GVL
Sbjct:    7 GDGKEAINEQVIANTYANMRTEMNQLYTKITELEMEVSEHSLVIGAIEPLDPSRRCYRMIGGVLVERTIREVLPAVKRNKEGLEEVIARMHEALERKKKEITEFELKYKIRIRKA--------DNDAEDEGGKKEGTAQGVL 140          
BLAST of EWM30345.1 vs. NCBI_GenBank
Match: gi|226497206|ref|NP_001148267.1| (prefoldin subunit 2 [Zea mays] >gi|195617056|gb|ACG30358.1| prefoldin subunit 2 [Zea mays])

HSP 1 Score: 104.76 bits (260), Expect = 5.894e-26
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 0
Query:    8 EATDPSSIIQTFQNLQGECQQMTTKLQELEMELSEHELVIQQLTPLEPSRKAYRLLGGVLMERTVGEVLPVLSEFASKLRTYIPQLDVALAKKQKQTREWRDKYNIRAQSAKEIEALQQKSAAGAPGGATDLSAGGVL 145
            EA +   I  T+ N++ E  Q+ TK+ ELEME+SEH LVI  + PL+PSR+ YR++GGVL+ERT+ EVLP +      L   I ++  AL +K+K+  E+  KY IR + A         + A   GG  + +A GVL
Sbjct:   11 EAINEQVIANTYANMRTEMNQLYTKITELEMEVSEHSLVIGAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVKRNKEGLEEVIARMHEALERKKKEITEFELKYKIRIRKA--------DNDAEDEGGKKEGTAQGVL 140          
The following BLAST results are available for this feature:
BLAST of EWM30345.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113004|gb|EWM30345.1|1.459e-102100.00prefoldin subunit 2 [Nannochloropsis gaditana][more]
gi|1211306391|ref|XP_021433504.1|1.397e-2641.91prefoldin subunit 2-like [Oncorhynchus mykiss][more]
gi|255552175|ref|XP_002517132.1|2.003e-2638.30PREDICTED: probable prefoldin subunit 2 [Ricinus c... [more]
gi|1158885292|ref|XP_020346988.1|2.592e-2641.91prefoldin subunit 2-like isoform X2 [Oncorhynchus ... [more]
gi|213513175|ref|NP_001134472.1|4.314e-2641.91Prefoldin subunit 2 [Salmo salar] >gi|209733582|gb... [more]
gi|242078231|ref|XP_002443884.1|4.445e-2640.85probable prefoldin subunit 2 [Sorghum bicolor] >gi... [more]
gi|514759525|ref|XP_004964312.1|4.494e-2641.26PREDICTED: probable prefoldin subunit 2 [Setaria i... [more]
gi|1049283084|ref|XP_017537959.1|5.566e-2641.04PREDICTED: prefoldin subunit 2 [Pygocentrus natter... [more]
gi|242071401|ref|XP_002450977.1|5.825e-2641.55probable prefoldin subunit 2 [Sorghum bicolor] >gi... [more]
gi|226497206|ref|NP_001148267.1|5.894e-2641.30prefoldin subunit 2 [Zea mays] >gi|195617056|gb|AC... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna365rna365Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications