rna3649, rna3649 (mRNA) Nannochloropsis gaditana

Overview
Namerna3649
Unique Namerna3649
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1286
Alignment locationCM002461.1:882006..883671 +

Link to JBrowse

Properties
Property NameValue
Producturacil-dna glycosylase
Orig transcript idgnl|cribi|Naga_100056g6.10453.mrna
Orig protein idgnl|cribi|Naga_100056g6.10453
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:882006..883671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100056g6gene3515Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3649rna3649-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27040.1cds3640Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3649 ID=rna3649|Name=rna3649|organism=Nannochloropsis gaditana|type=mRNA|length=1286bp
CCGTTCAGTCTAAAAGGCATCAGTCAATGCACGTTTGACAATCATTGCCG
AGAAATTTACGCAAGGGCACGCTCCTTCTCCTCCAGAAAATATGCAGTCC
CGAGGACGGGTTCGCGTCCTTCTACTGGTGATGCTTTTCACCATGCCTGA
TGCCATCTCTGCTTACGTTTTTAATCGGCTGCAGTATCACAAGCTGATGA
TGACATCTGACGATTCTTTACGGTCCCTCTCTCGGAAAACAATGCTGGCG
AACGGCCTGAGTAGTCGACGCACAGTCATTGACTCTGGTGCTACTGCTGG
TAAGCTAGCGGCGGCCTTGTTTCTCACACATCCTTCGGCTGCACAGGCTC
GTATAAAGGGAGCCGCCGAAATTGATGCGGAAGCATATTTTCAAGATCTC
TTGAAAGGTAATCCGCTGACGGGGGGAATTGAGCAATCTGCAATTGAAAT
TCGACCTGCTCGGGTGCTCGACAAAGAGTTCGCGACATTTTTGGACAAAA
CAACATTAAAATTATTAAGTGAAACGTCGGGCGTCTCTATGGAAGGTGTG
GAGAGGGAAGTAGCTGCTTTCAGACAAGCTGTGGAGCCAGGATTTCAACG
ACGGGCGCCCTTTCCGACGGGCGACTTGAGCAATGAACGGTGTTTCGACT
GCTATTCTTATGCCGATTTCCGTGTCGCGGCAAAGCTCATCCCCAACCTG
CGCGCCCGAGCCACTTTCGTCCGTCAGCTGGGAGAGACTGTTCTTGGTAA
AATCTTTGAGGGTCAAAGGGCAATCGATGCAAAAGCCGTGCCTCGAACGT
ACGATGCGCAAAAAGATGGGTTGGAAGAGGCACTAACCGGGCTTAGCAGA
ATTCTTGCTTACATGAAATTGAAAGGCTTTCTGAAAGATTTCCGGGTGAA
CGCCGATGACTACGACCGAGCCTCCTGGGATGAAGGGTTCAGCCTAGAGG
TGCTGGTAACGGTCATAGAACCAGCGACATTGGGAGGAAACGTTCAATTC
ACCGGGGAAGGGTTTCTTTTTCATCCGGACTACGTCGCTGAAACCTTGCT
GGCCTACTTGGCACTTTGTGGTGTACGGAACGCAAAAGCACTCCAGTACC
TGCTCGACACGGAGTATCGTCCAAATCCGAAGGACTACAACCCCACTGAA
GTTTTGTATCAAATAAGTCTCGGAAAGGGATCAGAAAATTAAGGGGTGGC
AGCATCATTCATGTATTATTCTATAAAACGACTTAAGCATTCAAATAAAA
ATATTAAAGATAAGCCTAAACTCATTTTGTGCTCGG
back to top

protein sequence of rna3649

>rna3649-protein ID=rna3649-protein|Name=rna3649|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MTQSKLSAFFRSSSHKKTAPKTGEDCSSESRLEKRVLDDIDDNSGTLEKH
DVVAVVQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTA
HPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPL
VFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMF
KEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWET
FTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSA
TKTNAPFIGSKSFSRTNAALVELGKEPIDWRL
back to top

mRNA from alignment at CM002461.1:882006..883671+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3649 ID=rna3649|Name=rna3649|organism=Nannochloropsis gaditana|type=mRNA|length=1666bp|location=Sequence derived from alignment at CM002461.1:882006..883671+ (Nannochloropsis gaditana)
TGACAGACAGTAGTCATGACACAGTCAAAACTATCAGCGTTTTTTCGTTC
GTCAAGCCACAAGAAAACTGCGCCGAAAACGGGCGAGGACTGTTCGTCTG
AATCGCGGCTGGAAAAACGGGTTTTGGACGACATTGACGATAACAGTGGT
ACATTGGAGAAGCATGACGTTGTGGCTGTTGTACAGCCTCCCGAGAAGAA
AACGGCTTGCGGAAAAAAAATCGAGGTTACCGCTGCATCGTTGGCTTTTG
CTGCTCCCTTGAAGTCCTCCCCTActccatcgccctctccttgtctgcCA
CCGGCCCTGACAGCCCATCCCGTGCTGCAGTCTCTCGACGCGATGGACGA
TGGTTGGCGTCACTTTGTCGTATCTCAGGCTGGCAAACCCTACTTTTCGC
GGCTTCTTGCATTCCTTTCGCAAGAAATTTCTAGTAGGCAAGTTGTGTAT
CCACCCTATCCCTTAGTGTTCTCTGCCTTAACCCTCTGCCGCTGGCTGGA
TGTCCGGGTAGTTATCATAGGCCAAGACCCTTATCATGGACCGAATCAAG
CGCATGGGCTGGCATTTTCAGTGCTGCCTCCTACGCAGCCCCCTCCGAGC
CTCAACAACATGTTCaaagaggcgatggaggacgTCAGCGGATTCACTAA
GCCCTCTCACGGAAACTTGGAAGCCTGGAGCCGGCAAGGTGTCCTTTTGC
TCAACACGGTGCTCACAGTTCGTCGTGGGCAGGCCAATTCGCATAAGGGT
AAAGGATGGGAAACGTTCACGGATGCTGTGATCAAGGAGCTGgacgtgaa
gaagaaggggttgGTCTTTGTTTTATGGGGGAAGCCTGCGCAGGTGAGAC
AATAGTCTACTGAATAATGAGTATTTGTGATCTTTGTCAGCTATATGAGT
GGCGTGGACGGCTCTGGGAATCATGCATCCGTTGAGCACGCGGAAGGGCC
TTTTCGGGTCACAGGTGTCCGCGTCACGTCCGGGATTGTCAGCTTCATTT
GTTGTGCAAAGCGCTTCATATCATCGTTGAAGAGGCTGTTGTATGGCTCC
TttgtccttttctctttgttTAGCCTTCTCACGTTTCAACATTCATACCC
CCTTCACGAAGGAAAAATGTAAAAGCATCAATCGCGCAAAGCATAGGGTC
ATCCGATGCGCGCACCCCTCACCGCTCTCCGCAACCAAGACAAACGCACC
ATTTATTGGATCCAAAAGCTTCTCGCGGACAAATGCTGCACTTGTGGAAC
TTGGAAAAGAGCCGATCGACTGGCGCTTGTGATCCATGCGGGCCATAAGG
CTCTCAAGATTGAGGACGTGGCCGAAGGCCGTCGCACAATGTAGCCAAGC
TTGCCCAGGCTCTGCAGAGCGCGAGATTTATCCAGGCAGAAAGTTTTGGT
TGGAATACGTTCTACGTTGGACAGGGCATGCGGGCCGTCTGTACAGATAA
TGGGGGGCACAGTCTGGGAGGCATGGGGCTCGGCTCAGGGATGGCGCAAG
GAACGGAAGAGGGGCTGAAGTTCCGTTTGACGTTACGTTACATGATGACT
TACAAATATGACTTTTGACAAGCTTTTTGGACTCTTTGTCAAATGTCTGT
TGCTCTCCCTGGAAGAGCGACCGCGACCGAGGCGGCGATATGAAGAACGT
ATACTTAGTTCTCTCA
back to top

Coding sequence (CDS) from alignment at CM002461.1:882006..883671+

>rna3649 ID=rna3649|Name=rna3649|organism=Nannochloropsis gaditana|type=CDS|length=1998bp|location=Sequence derived from alignment at CM002461.1:882006..883671+ (Nannochloropsis gaditana)
ATGACACAGTCAAAACTATCAGCGTTTTTTCGTTCGTCAAGCCACAAGAA
AACTGCGCCGAAAACGGGCGAGGACTGTTCGTCTGAATCGCGGCTGGAAA
AACGGGTTTTGGACGACATTGACGATAACAGTGGTACATTGGAGAAGCAT
GACGTTGTGGCTGTTGTACAGCCTCCCGAGAAGAAAACGGCTTGCGGAAA
AAAAATCGAGGTTACCGCTGCATCGTTGGCTTTTGCTGCTCCCTTGAAGT
CCTCCCCTActccatcgccctctccttgtctgcCACCGGCCCTGACAGCC
CATCCCGTGCTGCAGTCTCTCGACGCGATGGACGATGGTTGGCGTCACTT
TGTCGTATCTCAGGCTGGCAAACCCTACTTTTCGCGGCTTCTTGCATTCC
TTTCGCAAGAAATTTCTAGTAGGCAAGTTGTGTATCCACCCTATCCCTTA
GTGTTCTCTGCCTTAACCCTCTGCCGCTGGCTGGATGTCCGGGTAGTTAT
CATAGGCCAAGACCCTTATCATGGACCGAATCAAGCGCATGGGCTGGCAT
TTTCAGTGCTGCCTCCTACGCAGCCCCCTCCGAGCCTCAACAACATGTTC
aaagaggcgatggaggacgTCAGCGGATTCACTAAGCCCTCTCACGGAAA
CTTGGAAGCCTGGAGCCGGCAAGGTGTCCTTTTGCTCAACACGGTGCTCA
CAGTTCGTCGTGGGCAGGCCAATTCGCATAAGGGTAAAGGATGGGAAACG
TTCACGGATGCTGTGATCAAGGAGCTGgacgtgaagaagaaggggttgGT
CTTTGTTTTATGGGGGAAGCCTGCGCAGGAAAAATGTAAAAGCATCAATC
GCGCAAAGCATAGGGTCATCCGATGCGCGCACCCCTCACCGCTCTCCGCA
ACCAAGACAAACGCACCATTTATTGGATCCAAAAGCTTCTCGCGGACAAA
TGCTGCACTTGTGGAACTTGGAAAAGAGCCGATCGACTGGCGCTTGTGAA
TGACACAGTCAAAACTATCAGCGTTTTTTCGTTCGTCAAGCCACAAGAAA
ACTGCGCCGAAAACGGGCGAGGACTGTTCGTCTGAATCGCGGCTGGAAAA
ACGGGTTTTGGACGACATTGACGATAACAGTGGTACATTGGAGAAGCATG
ACGTTGTGGCTGTTGTACAGCCTCCCGAGAAGAAAACGGCTTGCGGAAAA
AAAATCGAGGTTACCGCTGCATCGTTGGCTTTTGCTGCTCCCTTGAAGTC
CTCCCCTActccatcgccctctccttgtctgcCACCGGCCCTGACAGCCC
ATCCCGTGCTGCAGTCTCTCGACGCGATGGACGATGGTTGGCGTCACTTT
GTCGTATCTCAGGCTGGCAAACCCTACTTTTCGCGGCTTCTTGCATTCCT
TTCGCAAGAAATTTCTAGTAGGCAAGTTGTGTATCCACCCTATCCCTTAG
TGTTCTCTGCCTTAACCCTCTGCCGCTGGCTGGATGTCCGGGTAGTTATC
ATAGGCCAAGACCCTTATCATGGACCGAATCAAGCGCATGGGCTGGCATT
TTCAGTGCTGCCTCCTACGCAGCCCCCTCCGAGCCTCAACAACATGTTCa
aagaggcgatggaggacgTCAGCGGATTCACTAAGCCCTCTCACGGAAAC
TTGGAAGCCTGGAGCCGGCAAGGTGTCCTTTTGCTCAACACGGTGCTCAC
AGTTCGTCGTGGGCAGGCCAATTCGCATAAGGGTAAAGGATGGGAAACGT
TCACGGATGCTGTGATCAAGGAGCTGgacgtgaagaagaaggggttgGTC
TTTGTTTTATGGGGGAAGCCTGCGCAGGAAAAATGTAAAAGCATCAATCG
CGCAAAGCATAGGGTCATCCGATGCGCGCACCCCTCACCGCTCTCCGCAA
CCAAGACAAACGCACCATTTATTGGATCCAAAAGCTTCTCGCGGACAAAT
GCTGCACTTGTGGAACTTGGAAAAGAGCCGATCGACTGGCGCTTGTGA
back to top
Synonyms
Publications