EWM27040.1, cds3640 (CDS) Nannochloropsis gaditana

Overview
NameEWM27040.1
Unique Namecds3640
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:882021..882848 +
Alignment locationCM002461.1:883117..883287 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27040.1
Producturacil-dna glycosylase
Orig transcript idgnl|cribi|Naga_100056g6.10453.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:882021..882848 +
CM002461.1supercontigCM002461.1:883117..883287 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0004844uracil DNA N-glycosylase activity
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
GO:0006284base-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR018085Ura-DNA_Glyclase_AS
IPR002043Ura_DNA_glycsylse
IPR005122Uracil-DNA_glycosylase-like
Homology
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|585109214|gb|EWM27040.1| (uracil-dna glycosylase [Nannochloropsis gaditana])

HSP 1 Score: 683.715 bits (1763), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MTQSKLSAFFRSSSHKKTAPKTGEDCSSESRLEKRVLDDIDDNSGTLEKHDVVAVVQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332
            MTQSKLSAFFRSSSHKKTAPKTGEDCSSESRLEKRVLDDIDDNSGTLEKHDVVAVVQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL
Sbjct:    1 MTQSKLSAFFRSSSHKKTAPKTGEDCSSESRLEKRVLDDIDDNSGTLEKHDVVAVVQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332          
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|553184423|ref|XP_005854086.1| (uracil-DNA glycosylase [Nannochloropsis gaditana CCMP526] >gi|422294972|gb|EKU22271.1| uracil-DNA glycosylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 276/277 (99.64%), Postives = 277/277 (100.00%), Query Frame = 0
Query:   56 VQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332
            +QPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL
Sbjct:  317 LQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 593          
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|1214691906|gb|OWZ06681.1| (Uracil-DNA glycosylase [Phytophthora megakarya])

HSP 1 Score: 267.314 bits (682), Expect = 9.089e-85
Identity = 130/228 (57.02%), Postives = 159/228 (69.74%), Query Frame = 0
Query:  103 VLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
             +Q    M   W   +  +  +  F  L  FL  E   ++ VYPP   VF+AL  C + D++VVI+GQDPYHGP QAHGL+FSV     PPPSL N+FKEAM DV+  T+P+HG L  WSRQGVL+LNTVLTVRRG+ANSHK +GWE FTDAVI  ++     +VF+LWGKPAQEK   I+  +H V+R +HPSPL ATKTNAPF+GSK FSR N+ L E GKEPIDW
Sbjct:   79 TVQLCSLMHQSWFDLLQKEFTRGSFQALTRFLEGEEGRKKTVYPPPADVFAALRDCAFSDLKVVILGQDPYHGPEQAHGLSFSVRHGVPPPPSLKNIFKEAMNDVA-ITRPTHGCLSCWSRQGVLMLNTVLTVRRGEANSHKKRGWEQFTDAVIANVNKHASNVVFLLWGKPAQEKGALIDSKRHLVVRSSHPSPLGATKTNAPFLGSKCFSRANSYLKEHGKEPIDW 305          
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|1173961409|gb|OQS07442.1| (uracil-DNA glycosylase [Thraustotheca clavata])

HSP 1 Score: 265.003 bits (676), Expect = 2.055e-84
Identity = 124/217 (57.14%), Postives = 154/217 (70.97%), Query Frame = 0
Query:  114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
            WR  +  +  K YF  L  FL QE   +  +YPP   +F+AL LC +  V+VVI+GQDPYHGP QAHGL FSV  P  PPPSL N++KEAM DV    KPSHG L +W  QGVL+LNTVLTVR  + NSHK +GWE FTD +I+++    +G+VF+LWGKPAQEK   I+R+KH++   +HPSPL ATKT  PFIGS+ FS+TN  LV+ GKEPIDW
Sbjct:   55 WREVLAQEFKKSYFKNLDTFLVQEQKKKAKIYPPKDEIFTALNLCPFDKVKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLRNIYKEAMSDVK-IPKPSHGCLLSWCHQGVLMLNTVLTVRAAEPNSHKKQGWENFTDVIIRKISQDSEGVVFLLWGKPAQEKIPLIDRSKHKIFTSSHPSPLGATKTAEPFIGSRCFSKTNEYLVQQGKEPIDW 270          
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|1173942420|gb|OQR91428.1| (uracil-DNA glycosylase [Achlya hypogyna])

HSP 1 Score: 265.388 bits (677), Expect = 2.077e-84
Identity = 126/217 (58.06%), Postives = 159/217 (73.27%), Query Frame = 0
Query:  114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
            WR  +  +  K YF +L AFL +E + +  +YPP   +F+AL LC +  V+VVI+GQDPYHGP QAHGL FSV  P  PPPSL N++KEAM DV    KP+HG L +W  QGVLLLNTVLTVR  +ANSHK +GWE FTD VI+++  +  G+VF+LWGKPAQEK   I+R KH ++  +HPSPL ATKT+ PFIGS+ FS+TNA LV+ GKEPI+W
Sbjct:   60 WREILALEFKKSYFKQLDAFLVREQAKKAKIYPPKQEIFTALNLCPFDQVKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLKNIYKEAMADVE-IAKPTHGCLLSWCHQGVLLLNTVLTVRATEANSHKKQGWENFTDVVIRKISQELSGVVFLLWGKPAQEKIVLIDRTKHCILTSSHPSPLGATKTSEPFIGSRCFSKTNAYLVKQGKEPINW 275          
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|219118945|ref|XP_002180239.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408496|gb|EEC48430.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 263.462 bits (672), Expect = 2.322e-84
Identity = 122/219 (55.71%), Postives = 158/219 (72.15%), Query Frame = 0
Query:  114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332
            W+  + +      F++L AFL  E      +YPP   +FSAL LC +  ++VVI+GQDPYHGP Q HGLAFSV    +PPPSL N+F+EA++DV G   P HGNLE W+RQGVLLLNTVLTVRRG+ANSH G+GWE  TDA+I  ++ K  G+VF+LWG PA +K  S++ A H +IR +HPSPL ATKT +PF+GS+ FSR N AL ++GK+PIDW +
Sbjct:    9 WKEKLSTTFESESFAKLAAFLEIERKMGATIYPPKEDIFSALNLCPFDKIKVVIVGQDPYHGPGQGHGLAFSVRRGVKPPPSLQNVFREAIDDV-GIATPMHGNLEHWARQGVLLLNTVLTVRRGEANSHAGQGWERVTDAIIHVVNAKSDGVVFLLWGNPAHKKAASVDSANHFIIRSSHPSPLGATKTKSPFLGSRCFSRANDALKKMGKDPIDWNV 226          
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|669155602|ref|XP_008613363.1| (uracil-DNA glycosylase [Saprolegnia diclina VS20] >gi|530734998|gb|EQC33240.1| uracil-DNA glycosylase [Saprolegnia diclina VS20])

HSP 1 Score: 263.848 bits (673), Expect = 9.811e-84
Identity = 123/217 (56.68%), Postives = 160/217 (73.73%), Query Frame = 0
Query:  114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
            WR  +  +  K YF  L AFL +E   + +++PP   +F+AL LC +  ++VVI+GQDPYHGP QAHGL FSV  P  PPPSL N++KEA+ DV+   KPSHG L +W  QGVLLLNTVLTVR  +ANSHK +GWETFTD +++++  +  G+VF+LWGKPAQEK   I+R+KH ++  +HPSPL ATKT  PFIGS+ FS+TNA LV+ GK+PIDW
Sbjct:   69 WREMLAPEFKKSYFKSLDAFLVREQQKKAMIFPPKSEIFTALNLCPFDKIKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLKNIYKEAIADVN-IPKPSHGCLLSWCDQGVLLLNTVLTVRATEANSHKKQGWETFTDVIMRKISKETSGVVFLLWGKPAQEKSALIDRSKHCILTSSHPSPLGATKTAEPFIGSRCFSKTNAYLVQQGKDPIDW 284          
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|570332641|gb|ETO80589.1| (uracil-DNA glycosylase [Phytophthora parasitica P1976])

HSP 1 Score: 262.692 bits (670), Expect = 4.495e-83
Identity = 127/228 (55.70%), Postives = 158/228 (69.30%), Query Frame = 0
Query:  103 VLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
            V+Q    M   W   +  +  +  F  L  FL  E   ++ +YPP   VF+AL  C + D++VVI+GQDPYHGP QAHGL+FSV     PPPSL N+FKEAM D+ G  +P+HG L  WSRQGVLLLNTVLTVRRG+ NSHK +GWE  TDA+I +++     +VF+LWGKPAQEK   I+  +H V+R +HPSPL ATKTNAPF+GSK FSR N+ L E GKEPIDW
Sbjct:   76 VIQLRSLMHQSWFDLLQKEFARGSFQTLTRFLEGEEGRKKTIYPPPADVFAALRDCAFSDLKVVILGQDPYHGPQQAHGLSFSVRHGVPPPPSLKNIFKEAMNDM-GIDRPTHGCLSCWSRQGVLLLNTVLTVRRGEPNSHKKRGWEQLTDAIISKVNKDASNVVFLLWGKPAQEKGALIDSKRHLVVRSSHPSPLGATKTNAPFLGSKCFSRANSYLKEHGKEPIDW 302          
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|675186661|ref|XP_008902215.1| (uracil-DNA glycosylase [Phytophthora parasitica INRA-310] >gi|568097479|gb|ETN12221.1| uracil-DNA glycosylase [Phytophthora parasitica INRA-310])

HSP 1 Score: 262.692 bits (670), Expect = 5.120e-83
Identity = 127/228 (55.70%), Postives = 158/228 (69.30%), Query Frame = 0
Query:  103 VLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
            V+Q    M   W   +  +  +  F  L  FL  E   ++ +YPP   VF+AL  C + D++VVI+GQDPYHGP QAHGL+FSV     PPPSL N+FKEAM D+ G  +P+HG L  WSRQGVLLLNTVLTVRRG+ NSHK +GWE  TDA+I +++     +VF+LWGKPAQEK   I+  +H V+R +HPSPL ATKTNAPF+GSK FSR N+ L E GKEPIDW
Sbjct:   76 VIQLRSLMHQSWFDLLQKEFARGSFQTLTRFLEGEEGRKKTIYPPPADVFAALRDCAFSDLKVVILGQDPYHGPQQAHGLSFSVRHGVPPPPSLKNIFKEAMNDM-GIDRPTHGCLSCWSRQGVLLLNTVLTVRRGEPNSHKKRGWEQLTDAIISKVNKDASNVVFLLWGKPAQEKGALIDSKRHLVVRSSHPSPLGATKTNAPFLGSKCFSRANSYLKEHGKEPIDW 302          
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|695437061|ref|XP_009532122.1| (hypothetical protein PHYSODRAFT_347255 [Phytophthora sojae] >gi|348671969|gb|EGZ11789.1| hypothetical protein PHYSODRAFT_347255 [Phytophthora sojae])

HSP 1 Score: 267.314 bits (682), Expect = 1.168e-82
Identity = 127/217 (58.53%), Postives = 156/217 (71.89%), Query Frame = 0
Query:  114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
            W   +  +  +  F  L  FL  E   ++ +YPP   VF+AL  C + D++VVI+GQDPYHGP QAHGL+FSV     PPPSL N+FKEAM DV G  +P+HG L  WS+QGVLLLNTVLTVRRG+ANSHK +GWE FTDAVI ++  +   +VF+LWGKPAQEK   I+  +H V+R +HPSPL ATKTNAPF+GSK FSR N+ L E GKEPIDW
Sbjct:  249 WFDVLQKEFSRGSFQALTRFLEGEEGRKKTIYPPPADVFAALRDCAFSDLKVVILGQDPYHGPQQAHGLSFSVRHGIPPPPSLKNIFKEAMNDV-GIARPTHGCLSCWSKQGVLLLNTVLTVRRGEANSHKKRGWEQFTDAVISKVSKEASNVVFLLWGKPAQEKGALIDTKRHLVVRSSHPSPLGATKTNAPFLGSKCFSRANSYLKEHGKEPIDW 464          
The following BLAST results are available for this feature:
BLAST of EWM27040.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109214|gb|EWM27040.1|0.000e+0100.00uracil-dna glycosylase [Nannochloropsis gaditana][more]
gi|553184423|ref|XP_005854086.1|0.000e+099.64uracil-DNA glycosylase [Nannochloropsis gaditana C... [more]
gi|1214691906|gb|OWZ06681.1|9.089e-8557.02Uracil-DNA glycosylase [Phytophthora megakarya][more]
gi|1173961409|gb|OQS07442.1|2.055e-8457.14uracil-DNA glycosylase [Thraustotheca clavata][more]
gi|1173942420|gb|OQR91428.1|2.077e-8458.06uracil-DNA glycosylase [Achlya hypogyna][more]
gi|219118945|ref|XP_002180239.1|2.322e-8455.71predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|669155602|ref|XP_008613363.1|9.811e-8456.68uracil-DNA glycosylase [Saprolegnia diclina VS20] ... [more]
gi|570332641|gb|ETO80589.1|4.495e-8355.70uracil-DNA glycosylase [Phytophthora parasitica P1... [more]
gi|675186661|ref|XP_008902215.1|5.120e-8355.70uracil-DNA glycosylase [Phytophthora parasitica IN... [more]
gi|695437061|ref|XP_009532122.1|1.168e-8258.53hypothetical protein PHYSODRAFT_347255 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3649rna3649Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications