EWM27040.1, cds3640 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|585109214|gb|EWM27040.1| (uracil-dna glycosylase [Nannochloropsis gaditana]) HSP 1 Score: 683.715 bits (1763), Expect = 0.000e+0 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query: 1 MTQSKLSAFFRSSSHKKTAPKTGEDCSSESRLEKRVLDDIDDNSGTLEKHDVVAVVQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332
MTQSKLSAFFRSSSHKKTAPKTGEDCSSESRLEKRVLDDIDDNSGTLEKHDVVAVVQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL
Sbjct: 1 MTQSKLSAFFRSSSHKKTAPKTGEDCSSESRLEKRVLDDIDDNSGTLEKHDVVAVVQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|553184423|ref|XP_005854086.1| (uracil-DNA glycosylase [Nannochloropsis gaditana CCMP526] >gi|422294972|gb|EKU22271.1| uracil-DNA glycosylase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0 Identity = 276/277 (99.64%), Postives = 277/277 (100.00%), Query Frame = 0
Query: 56 VQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332
+QPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL
Sbjct: 317 LQPPEKKTACGKKIEVTAASLAFAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 593
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|1214691906|gb|OWZ06681.1| (Uracil-DNA glycosylase [Phytophthora megakarya]) HSP 1 Score: 267.314 bits (682), Expect = 9.089e-85 Identity = 130/228 (57.02%), Postives = 159/228 (69.74%), Query Frame = 0
Query: 103 VLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
+Q M W + + + F L FL E ++ VYPP VF+AL C + D++VVI+GQDPYHGP QAHGL+FSV PPPSL N+FKEAM DV+ T+P+HG L WSRQGVL+LNTVLTVRRG+ANSHK +GWE FTDAVI ++ +VF+LWGKPAQEK I+ +H V+R +HPSPL ATKTNAPF+GSK FSR N+ L E GKEPIDW
Sbjct: 79 TVQLCSLMHQSWFDLLQKEFTRGSFQALTRFLEGEEGRKKTVYPPPADVFAALRDCAFSDLKVVILGQDPYHGPEQAHGLSFSVRHGVPPPPSLKNIFKEAMNDVA-ITRPTHGCLSCWSRQGVLMLNTVLTVRRGEANSHKKRGWEQFTDAVIANVNKHASNVVFLLWGKPAQEKGALIDSKRHLVVRSSHPSPLGATKTNAPFLGSKCFSRANSYLKEHGKEPIDW 305
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|1173961409|gb|OQS07442.1| (uracil-DNA glycosylase [Thraustotheca clavata]) HSP 1 Score: 265.003 bits (676), Expect = 2.055e-84 Identity = 124/217 (57.14%), Postives = 154/217 (70.97%), Query Frame = 0
Query: 114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
WR + + K YF L FL QE + +YPP +F+AL LC + V+VVI+GQDPYHGP QAHGL FSV P PPPSL N++KEAM DV KPSHG L +W QGVL+LNTVLTVR + NSHK +GWE FTD +I+++ +G+VF+LWGKPAQEK I+R+KH++ +HPSPL ATKT PFIGS+ FS+TN LV+ GKEPIDW
Sbjct: 55 WREVLAQEFKKSYFKNLDTFLVQEQKKKAKIYPPKDEIFTALNLCPFDKVKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLRNIYKEAMSDVK-IPKPSHGCLLSWCHQGVLMLNTVLTVRAAEPNSHKKQGWENFTDVIIRKISQDSEGVVFLLWGKPAQEKIPLIDRSKHKIFTSSHPSPLGATKTAEPFIGSRCFSKTNEYLVQQGKEPIDW 270
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|1173942420|gb|OQR91428.1| (uracil-DNA glycosylase [Achlya hypogyna]) HSP 1 Score: 265.388 bits (677), Expect = 2.077e-84 Identity = 126/217 (58.06%), Postives = 159/217 (73.27%), Query Frame = 0
Query: 114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
WR + + K YF +L AFL +E + + +YPP +F+AL LC + V+VVI+GQDPYHGP QAHGL FSV P PPPSL N++KEAM DV KP+HG L +W QGVLLLNTVLTVR +ANSHK +GWE FTD VI+++ + G+VF+LWGKPAQEK I+R KH ++ +HPSPL ATKT+ PFIGS+ FS+TNA LV+ GKEPI+W
Sbjct: 60 WREILALEFKKSYFKQLDAFLVREQAKKAKIYPPKQEIFTALNLCPFDQVKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLKNIYKEAMADVE-IAKPTHGCLLSWCHQGVLLLNTVLTVRATEANSHKKQGWENFTDVVIRKISQELSGVVFLLWGKPAQEKIVLIDRTKHCILTSSHPSPLGATKTSEPFIGSRCFSKTNAYLVKQGKEPINW 275
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|219118945|ref|XP_002180239.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408496|gb|EEC48430.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 263.462 bits (672), Expect = 2.322e-84 Identity = 122/219 (55.71%), Postives = 158/219 (72.15%), Query Frame = 0
Query: 114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332
W+ + + F++L AFL E +YPP +FSAL LC + ++VVI+GQDPYHGP Q HGLAFSV +PPPSL N+F+EA++DV G P HGNLE W+RQGVLLLNTVLTVRRG+ANSH G+GWE TDA+I ++ K G+VF+LWG PA +K S++ A H +IR +HPSPL ATKT +PF+GS+ FSR N AL ++GK+PIDW +
Sbjct: 9 WKEKLSTTFESESFAKLAAFLEIERKMGATIYPPKEDIFSALNLCPFDKIKVVIVGQDPYHGPGQGHGLAFSVRRGVKPPPSLQNVFREAIDDV-GIATPMHGNLEHWARQGVLLLNTVLTVRRGEANSHAGQGWERVTDAIIHVVNAKSDGVVFLLWGNPAHKKAASVDSANHFIIRSSHPSPLGATKTKSPFLGSRCFSRANDALKKMGKDPIDWNV 226
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|669155602|ref|XP_008613363.1| (uracil-DNA glycosylase [Saprolegnia diclina VS20] >gi|530734998|gb|EQC33240.1| uracil-DNA glycosylase [Saprolegnia diclina VS20]) HSP 1 Score: 263.848 bits (673), Expect = 9.811e-84 Identity = 123/217 (56.68%), Postives = 160/217 (73.73%), Query Frame = 0
Query: 114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
WR + + K YF L AFL +E + +++PP +F+AL LC + ++VVI+GQDPYHGP QAHGL FSV P PPPSL N++KEA+ DV+ KPSHG L +W QGVLLLNTVLTVR +ANSHK +GWETFTD +++++ + G+VF+LWGKPAQEK I+R+KH ++ +HPSPL ATKT PFIGS+ FS+TNA LV+ GK+PIDW
Sbjct: 69 WREMLAPEFKKSYFKSLDAFLVREQQKKAMIFPPKSEIFTALNLCPFDKIKVVILGQDPYHGPGQAHGLCFSVQKPVPPPPSLKNIYKEAIADVN-IPKPSHGCLLSWCDQGVLLLNTVLTVRATEANSHKKQGWETFTDVIMRKISKETSGVVFLLWGKPAQEKSALIDRSKHCILTSSHPSPLGATKTAEPFIGSRCFSKTNAYLVQQGKDPIDW 284
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|570332641|gb|ETO80589.1| (uracil-DNA glycosylase [Phytophthora parasitica P1976]) HSP 1 Score: 262.692 bits (670), Expect = 4.495e-83 Identity = 127/228 (55.70%), Postives = 158/228 (69.30%), Query Frame = 0
Query: 103 VLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
V+Q M W + + + F L FL E ++ +YPP VF+AL C + D++VVI+GQDPYHGP QAHGL+FSV PPPSL N+FKEAM D+ G +P+HG L WSRQGVLLLNTVLTVRRG+ NSHK +GWE TDA+I +++ +VF+LWGKPAQEK I+ +H V+R +HPSPL ATKTNAPF+GSK FSR N+ L E GKEPIDW
Sbjct: 76 VIQLRSLMHQSWFDLLQKEFARGSFQTLTRFLEGEEGRKKTIYPPPADVFAALRDCAFSDLKVVILGQDPYHGPQQAHGLSFSVRHGVPPPPSLKNIFKEAMNDM-GIDRPTHGCLSCWSRQGVLLLNTVLTVRRGEPNSHKKRGWEQLTDAIISKVNKDASNVVFLLWGKPAQEKGALIDSKRHLVVRSSHPSPLGATKTNAPFLGSKCFSRANSYLKEHGKEPIDW 302
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|675186661|ref|XP_008902215.1| (uracil-DNA glycosylase [Phytophthora parasitica INRA-310] >gi|568097479|gb|ETN12221.1| uracil-DNA glycosylase [Phytophthora parasitica INRA-310]) HSP 1 Score: 262.692 bits (670), Expect = 5.120e-83 Identity = 127/228 (55.70%), Postives = 158/228 (69.30%), Query Frame = 0
Query: 103 VLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
V+Q M W + + + F L FL E ++ +YPP VF+AL C + D++VVI+GQDPYHGP QAHGL+FSV PPPSL N+FKEAM D+ G +P+HG L WSRQGVLLLNTVLTVRRG+ NSHK +GWE TDA+I +++ +VF+LWGKPAQEK I+ +H V+R +HPSPL ATKTNAPF+GSK FSR N+ L E GKEPIDW
Sbjct: 76 VIQLRSLMHQSWFDLLQKEFARGSFQTLTRFLEGEEGRKKTIYPPPADVFAALRDCAFSDLKVVILGQDPYHGPQQAHGLSFSVRHGVPPPPSLKNIFKEAMNDM-GIDRPTHGCLSCWSRQGVLLLNTVLTVRRGEPNSHKKRGWEQLTDAIISKVNKDASNVVFLLWGKPAQEKGALIDSKRHLVVRSSHPSPLGATKTNAPFLGSKCFSRANSYLKEHGKEPIDW 302
BLAST of EWM27040.1 vs. NCBI_GenBank
Match: gi|695437061|ref|XP_009532122.1| (hypothetical protein PHYSODRAFT_347255 [Phytophthora sojae] >gi|348671969|gb|EGZ11789.1| hypothetical protein PHYSODRAFT_347255 [Phytophthora sojae]) HSP 1 Score: 267.314 bits (682), Expect = 1.168e-82 Identity = 127/217 (58.53%), Postives = 156/217 (71.89%), Query Frame = 0
Query: 114 WRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDW 330
W + + + F L FL E ++ +YPP VF+AL C + D++VVI+GQDPYHGP QAHGL+FSV PPPSL N+FKEAM DV G +P+HG L WS+QGVLLLNTVLTVRRG+ANSHK +GWE FTDAVI ++ + +VF+LWGKPAQEK I+ +H V+R +HPSPL ATKTNAPF+GSK FSR N+ L E GKEPIDW
Sbjct: 249 WFDVLQKEFSRGSFQALTRFLEGEEGRKKTIYPPPADVFAALRDCAFSDLKVVILGQDPYHGPQQAHGLSFSVRHGIPPPPSLKNIFKEAMNDV-GIARPTHGCLSCWSKQGVLLLNTVLTVRRGEANSHKKRGWEQFTDAVISKVSKEASNVVFLLWGKPAQEKGALIDTKRHLVVRSSHPSPLGATKTNAPFLGSKCFSRANSYLKEHGKEPIDW 464 The following BLAST results are available for this feature:
BLAST of EWM27040.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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