rna3647, rna3647 (mRNA) Nannochloropsis gaditana

Overview
Namerna3647
Unique Namerna3647
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1522
Alignment locationCM002461.1:879223..880633 -

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-prolyl cis-trans isomerase b precursor
Orig transcript idgnl|cribi|Naga_100056g8.10450.mrna
Orig protein idgnl|cribi|Naga_100056g8.10450
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:879223..880633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100056g8gene3513Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3647rna3647-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27037.1cds3638Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3647 ID=rna3647|Name=rna3647|organism=Nannochloropsis gaditana|type=mRNA|length=1522bp
CATCATGTCTCTGGCGCCATCTCAGCACTTTTCCCGAGCTCATCCCCATC
ACTCTTGTCTCCATTGTTTCTCACCAATAAAGACTTTCAGTTGCGCCCGG
AGGACACCGATTGCCGGGGGAGTGCATAGTTACATTCAGGGAAGGCAGGA
GTGGCTGAGACTGAGGGAAGATCAGGCGGTACACTAAGAGGGATACAGCC
CATTATCAGCACGCGCATCGCCCGCAATCCATAAAAAGAAAGGACCTCCA
CAAACATTCATTGCCATGGCCTCACTTTATCCGTCGCATCCTGCGGGCAA
CGACGAGGGCAGCGCGGGCTCGTACTCTGTCTCAGATAACGGCTCCCCCA
TGCCGGCTGTGGGTCGAGGGGGGGGCGGAGGAGGGAGGGGGGGGGGACAA
AAGCAGGGGGGAGAGGTGGCGGAAAGCGAGGGGGTAATGCCGGTGTTGGT
GGGGACGACAAGCGCAACAAGAAGCTGGAACTCAATCGCATTGCCTCACG
GGAGAGTCGAAAACGGAAAAAGCGTCGCCTGGAGGAGCTTCAACGATCTG
TCCTTTACTTGACGCACGAGAACCATCAACTCCGTGAACAAAACGAGCTT
CTGCGGCAAATGCTGGTGGGGCGCATGCCAGGGGCGGCCGCCGGTCAGCA
GGGTCCGCCGCTCCAGCCCTCGCAACGTCCAGGCAGCCCCAGTTCAGGGC
CCACACCCGTATCACTGCCGCCGCAGCATCAGCAACCGGCGCCGCAACAA
CAACACCAATATCAGCAACAGCAGCAGCAGCTCCAGCAGCTTTCGCACCA
GTTTCCGTCGAAAGAGGAAGGACCTGGCGGGCGGGCAGGTGCTACGGCCA
TAATGCTTCCCGCCTCTGCCACGGCCGCGCAACACCCGAGCATGGGAGCG
GGAGTGGGGGCCGGCGGAGGAGGGGGAGGAGGACCTCTATCGTTGCCCAG
TGTAGGAGGGATGGTCGGGGGGTTAGCCCAGCTCCAACAGCGACCACAAC
AGTACGGGGGAGGGGGAGGGGGAGGGCGGGGTCCTAACGGATTTGGGAGC
TCCGGCCCCACGGACGAGGGAGCGGAGGGCGACGAGGACGATGATCTCCT
TGACGAGGATGACACATAGATGGGACAGGGGGGGGTGCCAATAAGGGGGA
CACGTCTGGTTTGAGAAATTACTGCGCGCCCACGACTCCCACCGCGTGTG
CCGGGGAGGAAGGGACACGCTTGTGTGGACGAGTGCTTAAGGATCAAAAG
TTTTTGACGACACAGACACGTGTATGGATTTTGCAGGGAAACAATGGGGT
TTTGCAAGCCGAGCAAATTTGTGTATAGCGAGAAGTGGTTGATGCCACGG
GACCTACGGGGGATGTGGTTCCTCAGAGGCAACCATTGGATTCTCATTCA
TAAATGTCGAATCAATTTCACCGGCATTCACTGATATTTGTTTAGAGAGG
CCATGGAAATCTCAACAGATGGAAACAGAACGGCAGAGATCAAAGAAGCA
CGGACTTGTCAAGTTCCAAAAA
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protein sequence of rna3647

>rna3647-protein ID=rna3647-protein|Name=rna3647|organism=Nannochloropsis gaditana|type=polypeptide|length=299bp
MPFRLNGSRPRVYKRFCRWRGRLTVLPHFLTRWKPSLETEMRPTQSCLCI
TMLLMASLVIQGFLGTVQGPRQRRDISLSAAPARRGDDRRHVFKKAATTV
LLLTTAASTSPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNF
GRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKK
RGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGK
DGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL
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mRNA from alignment at CM002461.1:879223..880633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3647 ID=rna3647|Name=rna3647|organism=Nannochloropsis gaditana|type=mRNA|length=1411bp|location=Sequence derived from alignment at CM002461.1:879223..880633- (Nannochloropsis gaditana)
CGCTAGCTTACCAGCAGTAGCACCAGAGTCAATGACTGTGCGTCGACTAC
TCAGGCCGTTCGCCAGCATTGTTTTCCGAGAGAGGGACCGTAAAGAATCG
TCAGATGTCATCATCAGCTTGTGATACTGCAGCCGATTAAAAACGTAAGC
AGAGATGGCATCAGGCATGGTGAAAAGCATCACCAGTAGAAGGACGCGAA
CCCGTCCTCGGGACTGCATATTTTCTGGAGGAGAAGGAGCGTGCCCTTGC
GTAAATTTCTCGGCAATGATTGTCAAACGTGCATTGACTGATGCCTTTTA
GACTGAACGGGTCTCGACCTCGCGTCTACAAGCGATTTTGTCGTTGGCGA
GGCCGCTTGACCGTTCTGCCCCATTTTTTGACACGCTGGAAACCCTCCTT
GGAAACAGAGATGCGACCAACGCAAAGCTGTCTATGCATAACAATGCTTC
TGATGGCCAGCTTGGTAATTCAGGGTTTCTTAGGAACTGTGCAAGGGCCA
AGACAGGTGAGAGATGAAGAGTGCTGGGCAGTCGACGGGGTCGGACCGGG
GAGTGTACCAGAAGTAAAAAGCACACCAGGACACCATTTGTATGTTTACC
CAACCCACTTAAACAGAGGAGGGACATAAGTTTAAGCGCAGCGCCCGCTA
GAAGAGGTGACGATCGACGCCATGTGTTCAAAAAGGCAGCAACAACCGTG
CTGCTTTTGACTACTGCCGCAAGCACGTCCCCCACCCTTTCTGCCCCGTA
TGACCAAGTAGAAGTGAGCGACCCCATTTTCCCTAATATCACGGAGCCAG
CTGTAACGTCTGTCTGTTTTCTAGAATTTGCTTCAGAAAAGACCAATTTC
GGCAGGATTGAGGTCTCCCTATATGGAAAAGTGTGCCCACAGACCGCAGC
AAATTTCGAAGCCCTGTGCCGGGACGGTTACAAGGGCAGCAACGTTTATC
GCGTCCTCAAGGACTTTTCCATACAGATGGGCGATATCGGTAGTAAAAAA
CGAGGGGCAACAGGACGCTCTTCCTTGAAAGGCGGCACCCCGTTGCCTAA
GGAAACGTTGCGGGTGCAGCACTCGTTGGAGGGAATGCTCTCCATGGTGA
ACGATAAATCAGGCACGGTCGACTCGCGATTCTTCATCAATATGGGGAAG
GACGGTTCCTGGGCAGATGGGCGCTATGTGGCTTTTGGAAGGGTGACGAA
AGGCTTGGAGGTGCTGAAAGAAGTGGAGAAAGTGGAGGTGAAGCCCCCGA
GTAATGTGCCCACCCTACCCATCAAGATCACGGCGGCGGGCGTGCTCTAG
GCACTTCTGTAGGGACTAAAGCTAGCACAGAAAGGAATTGGACGGTGGTG
CACACCATTCAACTGAGAGCAAAAAAGAAAGCAAATTGTGTCTGCTGCCT
AGGCGCATCTT
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Coding sequence (CDS) from alignment at CM002461.1:879223..880633-

>rna3647 ID=rna3647|Name=rna3647|organism=Nannochloropsis gaditana|type=CDS|length=1800bp|location=Sequence derived from alignment at CM002461.1:879223..880633- (Nannochloropsis gaditana)
AGGAGGGACATAAGTTTAAGCGCAGCGCCCGCTAGAAGAGGTGACGATCG
ACGCCATGTGTTCAAAAAGGCAGCAACAACCGTGCTGCTTTTGACTACTG
CCGCAAGCACGTCCCCCACCCTTTCTGCCCCGTATGACCAAGTAGAAGTG
AGCGACCCCATTTTCCCTAATATCACGGAGCCAGCTGTAACGTCTGTCTG
TTTTCTAGAATTTGCTTCAGAAAAGACCAATTTCGGCAGGATTGAGGTCT
CCCTATATGGAAAAGTGTGCCCACAGACCGCAGCAAATTTCGAAGCCCTG
TGCCGGGACGGTTACAAGGGCAGCAACGTTTATCGCGTCCTCAAGGACTT
TTCCATACAGATGGGCGATATCGGTAGTAAAAAACGAGGGGCAACAGGAC
GCTCTTCCTTGAAAGGCGGCACCCCGTTGCCTAAGGAAACGTTGCGGGTG
CAGCACTCGTTGGAGGGAATGCTCTCCATGGTGAACGATAAATCAGGCAC
GGTCGACTCGCGATTCTTCATCAATATGGGGAAGGACGGTTCCTGGGCAG
ATGGGCGCTATGTGGCTTTTGGAAGGGTGACGAAAGGCTTGGAGGTGCTG
AAAGAAGTGGAGAAAGTGGAGGTGAAGCCCCCGAGTAATGTGCCCACCCT
ACCCATCAAGATCACGGCGGCGGGCGTGCTCTAGATGCCTTTTAGACTGA
ACGGGTCTCGACCTCGCGTCTACAAGCGATTTTGTCGTTGGCGAGGCCGC
TTGACCGTTCTGCCCCATTTTTTGACACGCTGGAAACCCTCCTTGGAAAC
AGAGATGCGACCAACGCAAAGCTGTCTATGCATAACAATGCTTCTGATGG
CCAGCTTGGTAATTCAGGGTTTCTTAGGAACTGTGCAAGGGCCAAGACAG
AGGAGGGACATAAGTTTAAGCGCAGCGCCCGCTAGAAGAGGTGACGATCG
ACGCCATGTGTTCAAAAAGGCAGCAACAACCGTGCTGCTTTTGACTACTG
CCGCAAGCACGTCCCCCACCCTTTCTGCCCCGTATGACCAAGTAGAAGTG
AGCGACCCCATTTTCCCTAATATCACGGAGCCAGCTGTAACGTCTGTCTG
TTTTCTAGAATTTGCTTCAGAAAAGACCAATTTCGGCAGGATTGAGGTCT
CCCTATATGGAAAAGTGTGCCCACAGACCGCAGCAAATTTCGAAGCCCTG
TGCCGGGACGGTTACAAGGGCAGCAACGTTTATCGCGTCCTCAAGGACTT
TTCCATACAGATGGGCGATATCGGTAGTAAAAAACGAGGGGCAACAGGAC
GCTCTTCCTTGAAAGGCGGCACCCCGTTGCCTAAGGAAACGTTGCGGGTG
CAGCACTCGTTGGAGGGAATGCTCTCCATGGTGAACGATAAATCAGGCAC
GGTCGACTCGCGATTCTTCATCAATATGGGGAAGGACGGTTCCTGGGCAG
ATGGGCGCTATGTGGCTTTTGGAAGGGTGACGAAAGGCTTGGAGGTGCTG
AAAGAAGTGGAGAAAGTGGAGGTGAAGCCCCCGAGTAATGTGCCCACCCT
ACCCATCAAGATCACGGCGGCGGGCGTGCTCTAGATGCCTTTTAGACTGA
ACGGGTCTCGACCTCGCGTCTACAAGCGATTTTGTCGTTGGCGAGGCCGC
TTGACCGTTCTGCCCCATTTTTTGACACGCTGGAAACCCTCCTTGGAAAC
AGAGATGCGACCAACGCAAAGCTGTCTATGCATAACAATGCTTCTGATGG
CCAGCTTGGTAATTCAGGGTTTCTTAGGAACTGTGCAAGGGCCAAGACAG
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Synonyms
Publications