EWM27037.1, cds3638 (CDS) Nannochloropsis gaditana

Overview
NameEWM27037.1
Unique Namecds3638
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:880128..880343 -
Alignment locationCM002461.1:879334..880017 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27037.1
Productpeptidyl-prolyl cis-trans isomerase b precursor
Orig transcript idgnl|cribi|Naga_100056g8.10450.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:880128..880343 -
CM002461.1supercontigCM002461.1:879334..880017 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|585109211|gb|EWM27037.1| (peptidyl-prolyl cis-trans isomerase b precursor [Nannochloropsis gaditana])

HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0
Query:    1 MPFRLNGSRPRVYKRFCRWRGRLTVLPHFLTRWKPSLETEMRPTQSCLCITMLLMASLVIQGFLGTVQGPRQRRDISLSAAPARRGDDRRHVFKKAATTVLLLTTAASTSPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299
            MPFRLNGSRPRVYKRFCRWRGRLTVLPHFLTRWKPSLETEMRPTQSCLCITMLLMASLVIQGFLGTVQGPRQRRDISLSAAPARRGDDRRHVFKKAATTVLLLTTAASTSPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL
Sbjct:    1 MPFRLNGSRPRVYKRFCRWRGRLTVLPHFLTRWKPSLETEMRPTQSCLCITMLLMASLVIQGFLGTVQGPRQRRDISLSAAPARRGDDRRHVFKKAATTVLLLTTAASTSPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299          
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|553184434|ref|XP_005854089.1| (peptidyl-prolyl cis-trans isomerase b precursor [Nannochloropsis gaditana CCMP526] >gi|422294975|gb|EKU22274.1| peptidyl-prolyl cis-trans isomerase b precursor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 467.618 bits (1202), Expect = 2.113e-165
Identity = 234/248 (94.35%), Postives = 234/248 (94.35%), Query Frame = 0
Query:   52 MLLMASLVIQGFLGTVQGPRQRRDISLSAAPARRGDDRRHVFKKAATTVLLLTTAASTSPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299
            MLLMASL              RRDISLSAAPARRGDDRRHVFKKAATTVLLLTTAASTSPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL
Sbjct:    1 MLLMASL--------------RRDISLSAAPARRGDDRRHVFKKAATTVLLLTTAASTSPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 234          
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|873230636|emb|CEM10275.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 160.229 bits (404), Expect = 9.518e-43
Identity = 87/211 (41.23%), Postives = 128/211 (60.66%), Query Frame = 0
Query:   99 TVLLLTTAASTSPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTN-------FGRIEVSLYGKVCPQTAANFEALCRDG-YKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSL--EGMLSMVND-KSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGV 298
            T LL  +A  +     AP       D +F N T P +T+ C+LE A             GR+ +S+YG++ P+TA NF  LC  G Y+ S +YR++KD+++QMGDIG+   G +GRS+   G+PLPKE  R++HS+   G++SMV D K+  VDSRFFI +  D  WAD R+VAFGRV  G  +++++ K +V+P +N P   + I  +GV
Sbjct:   95 TALLPASADESEAREDAPAS----PDAVFLNETTPKITARCWLEIAEAPKTADGAPLLLGRLNISVYGEIVPKTADNFIQLCSSGSYQNSTIYRIVKDYALQMGDIGAAGTGKSGRSAQPDGSPLPKENTRIRHSVPGHGVVSMVRDLKTKKVDSRFFITLVDDAGWADSRFVAFGRVQGGEGLMEQLGKEKVEPVTNRPVRKLIIADSGV 301          
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|1072231031|gb|OEU15764.1| (cyclophilin-like protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 143.665 bits (361), Expect = 6.130e-39
Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 0
Query:  133 PAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALC-RDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAG 297
            P +T   +L+    K   GR+ + LYG + P+TA NFE LC  + Y G+N YRV+ D +IQ G IG    G TG+SS   G     +   ++HS  G+LSMV    G VDSRFFIN  +D  WAD RY AFG V +G+ ++K++EKV V PP N P   +KI A+G
Sbjct:    3 PKITKRVYLDVEFGKNEKGRLVIGLYGDIMPKTAENFEKLCASNSYAGTNFYRVISDTTIQGGAIGDP-SGKTGKSSFDDGKSFEPDNFNIKHSKSGILSMVKGIGG-VDSRFFINTQEDAGWADDRYAAFGIVEEGMYLVKQIEKVPVSPPKNSPVNEVKILASG 166          
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|298712278|emb|CBJ26729.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 140.584 bits (353), Expect = 1.646e-36
Identity = 76/184 (41.30%), Postives = 108/184 (58.70%), Query Frame = 0
Query:  122 VSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRD------GYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299
            V+D I     EP VT   F++     +  GR+ ++LYGKV P T  NF AL          Y+G+  YRVL   +IQMG IGS+  G +G SS   G  +P+E   ++H  EG+LSMV +     DSRFFI++  D  WAD RYVAFGR+ +G++V+  +E+V+V+  +N P  P+ I   G+L
Sbjct:   84 VADKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRS-GKSGVSST--GENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 264          
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|922860965|gb|KOO28782.1| (peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 132.88 bits (333), Expect = 1.394e-34
Identity = 70/178 (39.33%), Postives = 103/178 (57.87%), Query Frame = 0
Query:  130 ITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRD----GYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVN----DKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299
            +T P VTS C+L+ A + +  GRI + LYG+V P+ A NF ALC      GY+GS+ +++L    +Q G++        G SS+ G  P   +   ++H++ GM+SMVN      SG  D+RF I +  D  + DGRY AFGRV+ G+ V++ +E+V VK    VP   + I AAG L
Sbjct:    2 VTPPKVTSRCYLDVAIDGSPAGRIAIDLYGEVAPRAAENFRALCTGEKGYGYQGSSFFKILSGLVMQAGEV-------PGHSSIYGDQPFAHDNYLIKHNVAGMVSMVNTGVGGNSGQSDTRFLIQLPDDAGFLDGRYEAFGRVSAGMNVVRMIEQVPVKTTRQVPVQKVSIEAAGEL 172          
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|397639875|gb|EJK73815.1| (hypothetical protein THAOC_04545 [Thalassiosira oceanica])

HSP 1 Score: 129.413 bits (324), Expect = 7.167e-33
Identity = 72/185 (38.92%), Postives = 104/185 (56.22%), Query Frame = 0
Query:  126 IFPNITEPAVTSVCFLE--FASEKTNFGRIEVSLYGKVCPQTAANFEALCRD------GYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTK---GLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299
            I P++  P VTS  +L+  FA  K    R+ + L+G+  P+ A NF +LC         Y G+  YR L   SIQ G IGS   G +G SSL+ G   P +   ++HS +G++S V + +G +DSRFF+    D  WADGRY AFG V +   G+++++ +  V+V+ P N P  PI I A G L
Sbjct:   22 IDPSVAPPRVTSKVYLDVKFAKYKEP-KRLVIGLFGEAMPRAAENFASLCAGDNAGGRSYAGTRFYRALSGNSIQGGAIGSPNTGRSGLSSLEDGATFPPDNFDIKHSTQGLVSAVRNPNGEIDSRFFVQTEDDAGWADGRYAAFGIVLEEGGGMDLVRRISNVDVQTPQNSPKDPITIVACGRL 205          
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|451998443|gb|EMD90907.1| (hypothetical protein COCHEDRAFT_1021706 [Bipolaris maydis C5])

HSP 1 Score: 123.635 bits (309), Expect = 1.086e-30
Identity = 68/174 (39.08%), Postives = 100/174 (57.47%), Query Frame = 0
Query:  130 ITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRD----GYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299
            +  P +TS  F +   +  + GRI + LYGK  P+T  NF AL       GY+GS  +RV+KDF IQ GD  +K  G  G+S    G   P E  +++H+ +G+LSM N    T  S+FFI      SW DG++V FG+V +G +V++++E V+ K P + P  P+KI  +G L
Sbjct:   29 VKSPKITSKVFFDIEQDGESLGRIVIGLYGKTVPKTTENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDF-TKGDGTGGKSIY--GEKFPDENFKLKHTRKGLLSMANAGKDTNGSQFFITTAIT-SWLDGKHVVFGQVLEGYDVVEKIENVQ-KAPGDRPVKPVKIAKSGEL 197          
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|928522244|ref|XP_014079919.1| (hypothetical protein COCC4DRAFT_80920 [Bipolaris maydis ATCC 48331] >gi|477588932|gb|ENI06010.1| hypothetical protein COCC4DRAFT_80920 [Bipolaris maydis ATCC 48331])

HSP 1 Score: 123.635 bits (309), Expect = 8.731e-30
Identity = 68/174 (39.08%), Postives = 100/174 (57.47%), Query Frame = 0
Query:  130 ITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRD----GYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299
            +  P +TS  F +   +  + GRI + LYGK  P+T  NF AL       GY+GS  +RV+KDF IQ GD  +K  G  G+S    G   P E  +++H+ +G+LSM N    T  S+FFI      SW DG++V FG+V +G +V++++E V+ K P + P  P+KI  +G L
Sbjct:   29 VKSPKITSKVFFDIEQDGESLGRIVIGLYGKTVPKTTENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDF-TKGDGTGGKSIY--GEKFPDENFKLKHTRKGLLSMANAGKDTNGSQFFITTAIT-SWLDGKHVVFGQVLEGYDVVEKIENVQ-KAPGDRPVKPVKIAKSGEL 197          
BLAST of EWM27037.1 vs. NCBI_GenBank
Match: gi|546324259|ref|XP_005718312.1| (unnamed protein product [Chondrus crispus] >gi|507114909|emb|CDF38419.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 121.709 bits (304), Expect = 2.967e-29
Identity = 75/192 (39.06%), Postives = 112/192 (58.33%), Query Frame = 0
Query:  113 LSAPYDQV--EVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMG-KDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKP--PSNVPTLPIKITAAGVL 299
            LS+P ++   E    I P   EP +T   FL+   + +   R+ + LYG V P T ANF+AL + GY G++VYRV+   ++Q+GD+  K  G +GR++   G+ L  E +RV+H++ G++SMV    G  DSRFF+N    D  + DGRY AFGRV + +    +VE+   K    S +P   ++I AAGVL
Sbjct:   84 LSSPTEEAAKEALQDIDPGSAEPKITDRVFLDLRLDGSVAERVTIGLYGDVTPATVANFKALLQSGYVGTSVYRVVPGLTVQLGDV-LKNGGRSGRAATADGS-LALENVRVRHTIPGLVSMVRGVDGRGDSRFFVNTRPGDSGYLDGRYCAFGRVLENMAFWYKVERKANKGVFASRLP--KVEIVAAGVL 271          
The following BLAST results are available for this feature:
BLAST of EWM27037.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109211|gb|EWM27037.1|0.000e+0100.00peptidyl-prolyl cis-trans isomerase b precursor [N... [more]
gi|553184434|ref|XP_005854089.1|2.113e-16594.35peptidyl-prolyl cis-trans isomerase b precursor [N... [more]
gi|873230636|emb|CEM10275.1|9.518e-4341.23unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072231031|gb|OEU15764.1|6.130e-3945.18cyclophilin-like protein, partial [Fragilariopsis ... [more]
gi|298712278|emb|CBJ26729.1|1.646e-3641.30conserved unknown protein [Ectocarpus siliculosus][more]
gi|922860965|gb|KOO28782.1|1.394e-3439.33peptidyl-prolyl cis-trans isomerase [Chrysochromul... [more]
gi|397639875|gb|EJK73815.1|7.167e-3338.92hypothetical protein THAOC_04545 [Thalassiosira oc... [more]
gi|451998443|gb|EMD90907.1|1.086e-3039.08hypothetical protein COCHEDRAFT_1021706 [Bipolaris... [more]
gi|928522244|ref|XP_014079919.1|8.731e-3039.08hypothetical protein COCC4DRAFT_80920 [Bipolaris m... [more]
gi|546324259|ref|XP_005718312.1|2.967e-2939.06unnamed protein product [Chondrus crispus] >gi|507... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3647rna3647Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications