rna3645, rna3645 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3645
Unique Name	rna3645
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2086
Alignment location	CM002461.1:875500..877643 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100056g10.10463.mrna
Orig protein id	gnl\|cribi\|Naga_100056g10.10463
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:875500..877643 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100056g10	gene3511	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3645	rna3645-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27050.1	cds3636	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:875500..877643-
coding sequence from alignment at CM002461.1:875500..877643-

mRNA sequence

>rna3645 ID=rna3645|Name=rna3645|organism=Nannochloropsis gaditana|type=mRNA|length=2086bp
CGACTTGATCTTTTGGGTTTGGGCGTGTTCCGCGGCACGTGCACCATCAG
AACCAGATAAGGAAGTTCATTGAGTATTTAAAACGGACGGAATACTGACG
CGTTATTTTCTTGGGCTATTCATCTATTCCAGACAGCCGTCATGTTGCTC
TCGACAATGATGCGCAGCGGGCGCCGCTTGGCCTTGCACTCTCTGCAAAA
TCAGGCACGTGCATTCGCTTCCCCCGCCGTCTCTGCCTTGGGCTTGGACA
AACTGGGAATCACAAACCCCACCACTATCTTCCGTAACCTGTCCTATCCG
GATTTAGCCAAGCATGAGGAGGCCAACAAGGAGGGAACCTTTGTGGCGAA
TGGCACGTTTGCCGTGGACACAGGTGCGCTTTCTCACGGAACAGGCCTGG
CAGCAGCATTTCGTGACCAACATGTTTATCAGGCCCCAGTCGACGAAGGA
GATTGAGGGCTTTGCCCCGGACTTCACCATCATCAATGCTTGTCGTGTGG
TGGACGAGAAATGGAAGGAGCACGGGATCAACAGCGAGGTCTTTGTCGCC
TTCAATCTGGAGAAAAAAGTGGCGATCATTGGGGGTACCTTTTACGGGGG
CGAGATGAAGAAAGGGATCTTCTCCATGATGAACTACTGGCTGCCTCTTG
AGGGGATCATGCCCATGCACTGCTCTGCGAACAAGGGCAAGGCGGGGGAC
ACTGCCCTCTTCTTCGGTTTGAGCGGCACTGGGAAGACGACGCTTTCTGC
AGACCCGGGCCGGTACCTGATCGGCGACGATGAGCACGGATGGGACGACC
ACGGCATCTTCAACTTCGAGGGCGGGTGCTACGCGAAGACCATCAACCTC
TCGGAGGAGAACGAGCCGGACATTTATCGGGCCATCAAGCGGGACGCCAT
GCTGGAAAACGTCTACATCGACCCCACTACCAAAGTCCCCGACTACTACA
ACACGAGCAAAACCGAAAACGGCCGAGTCTCTTACCCCCTGCACCATATT
AACAACTACGAACCCACTTCCATGGGGGACCATCCCGATAAAGTCATTTT
CTTGACCTGCGACGCCTTTGGAGTCCTGCCGCCCGTCGCGAAGCTCTCTC
CGGGACAAGCCATGTACCACTTTTTGAGCGGTTACACGGCCAAAGTGGCG
GGCACGGAGCGTGGCATCACTGAGCCGCAAGCCACCTTCTCCGCCTGCTT
CGGCGCCGCGTTTTTGACATTGCACCCCACAAAATATGCAGACCTGTTGC
AGAAAAAATTGGAGAAACACGGCACGGCTACCTACCTTGTCAACACGGGC
TGGACCGGCGGGGGTTACGGTGTGGGCAAGCGCATGAGCATCAAGAACAC
TCGTACCTGCATCGATGCCATCCTGGACGGATCCATCAAAAACGCGTCGT
TCTCGACAGACCCGGTCTTCGGCTTCTCGGTCCCTAAGGCCCTCCATGGC
GTGGCCAGTGACGTCCTGGACCCTCGGACGGCATGGGCAGACAAGGCCGC
GTACGACGCGCAGCGTTTGAAGCTGGGGGCTATGTTCCAGAAGAATTATA
CCAAGTACGTGACGCCCGGTGTGACGGATTATTCCTCGCACGGCCCCAAG
GTTTAGAGAGGGAGGCGCCCAGAGGGCAGGGGCGAGGATGCTCGGAGGAC
TCGCTTGCGGGAGCGTGTCAACGCGGCAGTCTCAGGCCCTCCATCTCGCC
GTGCCTGGCGGAGACAAGTGTGGATAAACGGACTTACGAGAAGCCAGGCT
GCGGAAGTGCACCGTGGGGCGGAATGGGAGCGCTAACGAGGACAGCTTGA
AACGGAGGACCCTGTCGCGGGGAGGGCAGGAGGGGGGCAGAGAGGAGATA
TGGAAGGAAGGATGAAGAGGATAAGCGCGACAAGAGGACGTGGGCGGGGC
AGCAAAGCAAGTACTTTTGGGACGAAAGAAGAGGCAGTTGTGGGCCTTCT
GGACAATACCTTAAGCAATCGACGCGCATCAATGAGCTTACGAAGAGAGG
AAAAAGGGCACTCCAAATGTAGGCAAAGGGAGGTGAGAAAGAAAGAGAAA
AGAGTTCCGCCAAAGGACTTCAAGCAATGCTTCCTC

protein sequence of rna3645

>rna3645-protein ID=rna3645-protein|Name=rna3645|organism=Nannochloropsis gaditana|type=polypeptide|length=423bp
MKKSFFGGVSRQSHGILIRVFLCAILASSSSAYTINSPSRSVSASPLWRP
LRESKPPRASTRLHSAASSGPGAFENDDSGWKDVTFIPQKTADLKPGAFR
LPRLTDFFATLPPASRWHKLLRRKKPAYESLRHDDYVEACRSLGVPPDIE
EDKLAAKVEALLVKYEKDRKKRIMIDWARDKIFEHRIFLQLDGQAVKPPG
GMDMRLLDERFLEISPKDTLDLMTALDLSPADLKGKPGPLTAVVNNPLLR
ALQITRLVKMGRFVLMAFGESLEAPNLRRLLWPGTVGLALALWFGNAVDF
VPLKYVITTVAHAGPIYNRGEAKLANRRERRPIKWTKLLLSLAFMALSTA
GAWAGGRAWCALKYPTGDLPENIFVPLVANLVTYVMSSCFFIRESTLAGG
RAARDAEGGDGGKGGRGGGRRPA

mRNA from alignment at CM002461.1:875500..877643-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3645 ID=rna3645|Name=rna3645|organism=Nannochloropsis gaditana|type=mRNA|length=2144bp|location=Sequence derived from alignment at CM002461.1:875500..877643- (Nannochloropsis gaditana)
CCGTAATCCGCCTCATCCGGCACCACCACGGGTGTCATGGCCATGGAGAC
AACATGAGAGTGAGTTGTACACCATGCTGTGAAGGAAAGGCGGACAGGCC
GCAGGTTTCGGTGGTCATGTCGAGGATTTATTTCTGTTGCCCCGATTGTT
ACTCGTGGCCTCGGAAACAACTTGACAGGCCCTTCAACCCATCGCAGGGT
TGCTGCGGTGGGCGGCTTTCGAGACGGGAATCCGCGCGAATGGGTGAAAT
TCTTTAACGTGGCACGATCGGCACGAATGTCTTCATGCCAATGTATCCTC
CCTGGACTGCCAGACAGTATCACGAAGCTTTAGAAAAGCAGCAAAGACAG
TCGAGTATCTCCTCCTCACTTTACGACATGCAACACATACATCAGGACGG
CGTCCCCTCAAGAACTGCGTTGTTGTGATTAGGCACCATGAAAAAGAGCT
TCTTTGGTGGCGTCTCGCGACAGTCCCACGGGATACTGATAAGAGTATTC
TTGTGTGCTATACTGGCGTCCTCATCTTCAGGTAGGCGGTGCACTTCTTC
ATGATTCAGCCGCCAAACCCCATATTTCAAGCAGTATGCACCATCGTTAT
TTCCTTTTGGTCTTATTCTGCTATGTTTTGCGTTTCTCCATGCCTTGGGG
TCACTCGCCCATATTTCGCGTTGTACCAGCCTACGCTGGAAGTGATGCAG
TCCAAGCCATCGACCTCTAACAGTGCAACATATGCCACAAAAGCACTAGA
CGGTTCCCCTTTCGCGACCCTGTTGTAATGCAGTACTCTTTTCCTTCGCC
ACACAACAACAGCCTATACCATAAATTCTCCTTCCCGGTCAGTTTCCGCC
TCCCCATTGTGGCGGCCTCTCCGGGAGTCGAAGCCCCCCCGTGCCTCCAC
GCGACTTCATTCCGCCGCTTCCTCCGGTCCGGGAGCCTTTGAAAACGATG
ACAGTGGATGGAAAGACGTGACCTTCATCCCTCAAAAAACAGCCGACCTG
AAGCCTGGAGCATTCCGCCTGCCCCGACTTACAGACTTCTTCGCCACCCT
GCCGCCCGCCTCGCGATGGCACAAGCTGCTGCGCCGGAAGAAACCCGCGT
ACGAAAGCTTGAGGCATGACGACTACGTCGAGGCCTGTCGCTCTTTGGGG
GTCCCTCCTGACATCGAGGAGGACAAACTCGCCGCCAAGGTTGAAGCCTT
GCTGGTCAAGTATGAGAAGGACCGGAAGAAGCGGATTATGATCGATTGGG
CTAGGGACAAGATTTTCGAGCACCGCATCTTCCTGCAGCTGGACGGACAG
GCGGTGAAGCCTCCGGGGGGCATGGACATGCGCCTGCTTGACGAGAGGTT
TCTAGAAATTTCCCCGAAAGATACCCTGGACCTGATGACGGCCCTCGACC
TCTCGCCCGCGGATTTGAAAGGGAAACCGGGCCCGCTCACGGCCGTGGTG
AACAACCCCTTGCTGCGAGCATTGCAGATCACCCGCTTGGTGAAAATGGG
GCGGTTCGTACTGATGGCGTTCGGCGAGTCCCTGGAAGCCCCCAACCTCC
GGCGCTTGCTGTGGCCGGGTACTGTGGGGCTGGCCTTGGCGCTCTGGTTC
GGGAACGCGGTGGACTTCGTCCCTTTGAAATACGTGATCACCACCGTCGC
CCACGCAGGGCCCATATACAACCGTGGGGAGGCCAAGCTGGCAAACAGGC
GGGAGCGGCGGCCCATCAAGTGGACGAAGCTCCTCTTGTCCTTGGCTTTC
ATGGCATTGTCGACCGCGGGGGCCTGGGCGGGCGGTAGAGCCTGGTGTGC
CTTGAAGTATCCGACGGGGGACTTGCCGGAAAATATATTTGTCCCCTTGG
TGGCGAATCTGGTGACCTACGTCATGAGTTCATGTTTCTTCATTCGAGAG
AGCACGTTGGCAGGGGGCCGCGCGGCGCGGGACGCAGAGGGTGGCGACGG
AGGGAAGGGGGGGAGAGGGGGAGGTCGAAGGCCAGCGTGATCTCAATCCA
AAGGGGGGAATGACAGGCGGAATCAGGCGTGATTGGACAAAGAATACGGG
GATGAGTGGTGAGTAGATGCGTGGGATCCCCCCCACGCACAGCATGGCGG
TTGTGGCGGCTAAAGAAATCCCAAAACCGAGTCGCGGCACCCGA

Coding sequence (CDS) from alignment at CM002461.1:875500..877643-

>rna3645 ID=rna3645|Name=rna3645|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at CM002461.1:875500..877643- (Nannochloropsis gaditana)
CCTATACCATAAATTCTCCTTCCCGGTCAGTTTCCGCCTCCCCATTGTGG
CGGCCTCTCCGGGAGTCGAAGCCCCCCCGTGCCTCCACGCGACTTCATTC
CGCCGCTTCCTCCGGTCCGGGAGCCTTTGAAAACGATGACAGTGGATGGA
AAGACGTGACCTTCATCCCTCAAAAAACAGCCGACCTGAAGCCTGGAGCA
TTCCGCCTGCCCCGACTTACAGACTTCTTCGCCACCCTGCCGCCCGCCTC
GCGATGGCACAAGCTGCTGCGCCGGAAGAAACCCGCGTACGAAAGCTTGA
GGCATGACGACTACGTCGAGGCCTGTCGCTCTTTGGGGGTCCCTCCTGAC
ATCGAGGAGGACAAACTCGCCGCCAAGGTTGAAGCCTTGCTGGTCAAGTA
TGAGAAGGACCGGAAGAAGCGGATTATGATCGATTGGGCTAGGGACAAGA
TTTTCGAGCACCGCATCTTCCTGCAGCTGGACGGACAGGCGGTGAAGCCT
CCGGGGGGCATGGACATGCGCCTGCTTGACGAGAGGTTTCTAGAAATTTC
CCCGAAAGATACCCTGGACCTGATGACGGCCCTCGACCTCTCGCCCGCGG
ATTTGAAAGGGAAACCGGGCCCGCTCACGGCCGTGGTGAACAACCCCTTG
CTGCGAGCATTGCAGATCACCCGCTTGGTGAAAATGGGGCGGTTCGTACT
GATGGCGTTCGGCGAGTCCCTGGAAGCCCCCAACCTCCGGCGCTTGCTGT
GGCCGGGTACTGTGGGGCTGGCCTTGGCGCTCTGGTTCGGGAACGCGGTG
GACTTCGTCCCTTTGAAATACGTGATCACCACCGTCGCCCACGCAGGGCC
CATATACAACCGTGGGGAGGCCAAGCTGGCAAACAGGCGGGAGCGGCGGC
CCATCAAGTGGACGAAGCTCCTCTTGTCCTTGGCTTTCATGGCATTGTCG
ACCGCGGGGGCCTGGGCGGGCGGTAGAGCCTGGTGTGCCTTGAAGTATCC
GACGGGGGACTTGCCGGAAAATATATTTGTCCCCTTGGTGGCGAATCTGG
TGACCTACGTCATGAGTTCATGTTTCTTCATTCGAGAGAGCACGTTGGCA
GGGGGCCGCGCGGCGCGGGACGCAGAGGGTGGCGACGGAGGGAAGGGGGG
GAGAGGGGGAGGTCGAAGGCCAGCGTGAATGAAAAAGAGCTTCTTTGGTG
GCGTCTCGCGACAGTCCCACGGGATACTGATAAGAGTATTCTTGTGTGCT
ATACTGGCGTCCTCATCTTCAGCCTATACCATAAATTCTCCTTCCCGGTC
AGTTTCCGCCTCCCCATTGTGGCGGCCTCTCCGGGAGTCGAAGCCCCCCC
GTGCCTCCACGCGACTTCATTCCGCCGCTTCCTCCGGTCCGGGAGCCTTT
GAAAACGATGACAGTGGATGGAAAGACGTGACCTTCATCCCTCAAAAAAC
AGCCGACCTGAAGCCTGGAGCATTCCGCCTGCCCCGACTTACAGACTTCT
TCGCCACCCTGCCGCCCGCCTCGCGATGGCACAAGCTGCTGCGCCGGAAG
AAACCCGCGTACGAAAGCTTGAGGCATGACGACTACGTCGAGGCCTGTCG
CTCTTTGGGGGTCCCTCCTGACATCGAGGAGGACAAACTCGCCGCCAAGG
TTGAAGCCTTGCTGGTCAAGTATGAGAAGGACCGGAAGAAGCGGATTATG
ATCGATTGGGCTAGGGACAAGATTTTCGAGCACCGCATCTTCCTGCAGCT
GGACGGACAGGCGGTGAAGCCTCCGGGGGGCATGGACATGCGCCTGCTTG
ACGAGAGGTTTCTAGAAATTTCCCCGAAAGATACCCTGGACCTGATGACG
GCCCTCGACCTCTCGCCCGCGGATTTGAAAGGGAAACCGGGCCCGCTCAC
GGCCGTGGTGAACAACCCCTTGCTGCGAGCATTGCAGATCACCCGCTTGG
TGAAAATGGGGCGGTTCGTACTGATGGCGTTCGGCGAGTCCCTGGAAGCC
CCCAACCTCCGGCGCTTGCTGTGGCCGGGTACTGTGGGGCTGGCCTTGGC
GCTCTGGTTCGGGAACGCGGTGGACTTCGTCCCTTTGAAATACGTGATCA
CCACCGTCGCCCACGCAGGGCCCATATACAACCGTGGGGAGGCCAAGCTG
GCAAACAGGCGGGAGCGGCGGCCCATCAAGTGGACGAAGCTCCTCTTGTC
CTTGGCTTTCATGGCATTGTCGACCGCGGGGGCCTGGGCGGGCGGTAGAG
CCTGGTGTGCCTTGAAGTATCCGACGGGGGACTTGCCGGAAAATATATTT
GTCCCCTTGGTGGCGAATCTGGTGACCTACGTCATGAGTTCATGTTTCTT
CATTCGAGAGAGCACGTTGGCAGGGGGCCGCGCGGCGCGGGACGCAGAGG
GTGGCGACGGAGGGAAGGGGGGGAGAGGGGGAGGTCGAAGGCCAGCGTGA
ATGAAAAAGAGCTTCTTTGGTGGCGTCTCGCGACAGTCCCACGGGATACT
GATAAGAGTATTCTTGTGTGCTATACTGGCGTCCTCATCTTCAG

Synonyms

Publications