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Properties
| Property Name | Value |
|---|
| Product | light-harvesting protein |
| Orig transcript id | gnl|cribi|Naga_100056g15.10443.mrna |
| Orig protein id | gnl|cribi|Naga_100056g15.10443 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:866684..868768 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3641 ID=rna3641|Name=rna3641|organism=Nannochloropsis gaditana|type=mRNA|length=1041bp
ATGCAGCCCTCAACACCCCGTGAACCTCATCGACTCTCGGCATCTTGGAT
CATTATAGATGGAGAAGGAGAGGAAGTGACTCTTGACCGGCGCAACCAAC
ACAACGGCCTAAGTTTGCGGGAAGAGGATGGAGGGGACGGGACTTTTACG
GTGTTAACTTTGCATCCTGATGGAGGGGCTTTGAGGAGTGAGGATGAACG
AAGAGACGGTCCTCTGCTGGACTCGTCTCTCAACCTGAATGACGGCAGGA
TGATCGAGCTCCCCACAATGTTGGAAGAGGAAGGTGCAGATGGTATGTAT
CCAAGCGATGGAGCAAGGCGTGAGGCCAGTCCCCGTAGGGACACGCCTAG
ACAAGGAGGGCGTGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGC
AGCAGCAGCAGCAGCAGCAAGAGGAAGCGCGTGTCTCACCTAGGGCCTCG
TCTAGAGCAGAAGGTCCATCTCAGCCTCCAACTGATGAAAGGTCTGAAAA
TGGTGGCGATGGCTGGCGGAAGCGCGCCACGTCGGTGGTCATGGCTCATT
TCAGGGCTATCCTCAAAAGCTTCTCGCACCGCGCGTCCTACTGCGGCACG
GGCGCTGGCTACAGCATTGAAGATAAGCTGCGCATGGCTTGCCCTTACTT
GCGCCGCCAATCTCGCCAACGCTTGTTGCTGATCACAACTACAATACCTG
TAGCAGTGATAGTGGGTGTGACGGCTGCGATAGTCCTCGTCAGCGTCTGT
GTTTCGAGCACACACCCTTCCTCCATTCCCTCCTCCTTCTCCTCCTCCTC
CTCTTCCTCCTCTTCCTCTTCCTTCTCCGAATCCGAAGCTCGCGGAAATA
GAGCCCGAGCCGTCCCTGGCCTTGAAGCATCTCCTGTTCTTGCCAATTGG
ACAGAGAAGGCCATCATCGACAAGGAAGTTGCACGTGTAGCAGGATGTGT
ATATGGAAAGCACGTCGCTAGCACAGAAATGAAATCTACGTTCCATATAA
CCTTGACTGACATCGGCTTTCATTATGTGGTTGAGAGATGA back to topprotein sequence of rna3641 >rna3641-protein ID=rna3641-protein|Name=rna3641|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MACPHGLRIVNFFTGAPQEPTLLFLRFLALPSRKTRAMSSASFTNAPCPS
PSLQSSPKKMTMFRKLALALLCSSAVAFHAPAPVSRSSVRLQAENKPAAP
PAAAPAAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKPKNLDGMVGDVGFD
PLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGV
KAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDP
LGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS back to topmRNA from alignment at CM002461.1:866684..868768+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3641 ID=rna3641|Name=rna3641|organism=Nannochloropsis gaditana|type=mRNA|length=2085bp|location=Sequence derived from alignment at CM002461.1:866684..868768+ (Nannochloropsis gaditana)
CACGCCAcccgcttttcctcttcgcctccgtCTGCCGCCCGTCTCCTGGT
GCTTCAGAATAGAGGCACAGGCgcgagggagtggggaggtggtggtaaCA
GAGGTGTGTTCTTGGTTTGCGCGTGCGAAtacattttttgggggcggTGT
TGGTTGCCTTGTTTAGAAAAGTCGTGCTATTTGCTTCCCACCTCCCGACG
CGAAACTGATCTTGAGTTCATTTCAAGCTTTGTCCCCTGCCCGGGAATTA
TAAGCATACCGCTCGAAAAGCTACCTCTTTGGTATGCATATTACGTTACT
TAATGTGTGGGAAATAGCATGGCATGCCCCCATGGCCTGAGAATCGTTAA
CTTTTTCACTGGTGCCCCTCAAGAGCCTACACTTTTGTTCCTACGtttcc
tcgctcttccctcccgaaAAACTCGTGCCATGTCCTCCGCTTCATTCACA
AatgctccttgcccttctccttcccttcagaGTTCACCTAAGAAGATGAC
CATGTTCCGCAAGCTGGCCCTGGCCCTTCTCTGCTCCTCCGCGGTCGCCT
TCCATGCACCCGCACCCGTAAGCCGCAGCTCAGTACGCCTCCAGGCCGAG
AACAAACCCGCCGCACCGCCCGCTGCAGcccctgctgccgctgctcctgc
ggcggcggctgctgctccccccccccccgcgaaGCCCCAACCCGTGTTCT
CGAAGTCGGTGCCGTTCCTCTTGAAGCCCAAGAACTTGGATGGGATGGTG
GGCGATGTGGGCTTCGACCCTCTGGGCCTGGCTGAGTACGTGGACATCCG
ATGGCTGCGAGAGGCGGAGCTGAAGAACGGTGCGTGTGGTAGATCATGGG
CAGGATATGATGCCTCTTTCCATGGCTCTCGGGGGGATCGGGGGGGACCA
ACGCGGAGTCGCCGCGCATTTTTCATTGAATGCCAGACAAGGAGCGCTTG
AGTGCTTTCCCCGCATGTTATCTCCCCTGGAAACCACCGTCGGTCGCGAC
GACGCGTCTAGGCGAGCCCTCaagcctcccaggcccggcaTGGCACAGAC
AgcgccccgcctgccccccgaCCCGCACCTCCCCACGCCTGACATCGCAC
TCcccacctctctttccccttgttCCCCAGGCCGCGTCGCAATGCTTGCC
TTCTTGGGCTTCGTGGTCCAGGAATTTATCCGCCTCCCAGGAGACCTGTA
CTCGGAGCCCAACGGGGTCAAAGCCTTCTTCCAAGTCGGACCCCAGCCCC
TCATTCAgatcttcctcttctgtgGGTTTTTGGAATTCACCCTCCACAAG
GGGAAGATGACGCAAATGGACATGTTTGCGGACGGAAAGCGCGAGCCCGG
GAACTTTGGCTTTGATCCCTTGGGTTTCGGCAAGGATCCCTCCAAACGCG
AGCGACTGGCACTGGCAGAGCTCAAGAACGGACGTCTGGCCATGATCGCG
ATCGGTGGTCTTATCCACCATGCCCTCGTGACGGGCCATGCCACGTTTAG
CAGCTAAAATCAGACACTTCATTTTCCAGTagccagaggaggggaggggg
aggtggagaggggggcgtgaatgaccgggagggagagggaggcgtcggca
TGCATGGTTCAGAGTGGAATGGGCATGTTACAATGACTGTGAGCGTTGCG
AAGATCGAGGACGACACGACGCGATCGCCGTGGATGATAACCATGGCGAC
GTgcctcccacctcttccatcgGAGGATCcggcctctttctcccggtCTA
TCTCCTCTTCAAATGGCCCTGACCGAGAGACATGGAGACATGTAGGAGAa
gtggagaggaagataCGACGTGAATGATTGATGTGTTCGAGTCTGCATGC
GTGTGGTGGGAGGCATCACAAGGATGGGGTTGGAAAAATGGTGaagtttt
tttggggggtaCGTGAGATAACGGAAAGAGAACAACAACCACTAACCGTG
ATTCGACCGCAATTTCTAGCCATTGGTTTTTTGGTTTTTGAATGGTTTTT
TGCACATAGGCTTGAAGCGCGCCTGTACGTGTGCGATGGCACCAGAAAAG
TGCGGGAGGTCAAGAAGTGGCACTCTTCACACATC back to topCoding sequence (CDS) from alignment at CM002461.1:866684..868768+ >rna3641 ID=rna3641|Name=rna3641|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at CM002461.1:866684..868768+ (Nannochloropsis gaditana)
ATGGCATGCCCCCATGGCCTGAGAATCGTTAACTTTTTCACTGGTGCCCC
TCAAGAGCCTACACTTTTGTTCCTACGtttcctcgctcttccctcccgaa
AAACTCGTGCCATGTCCTCCGCTTCATTCACAAatgctccttgcccttct
ccttcccttcagaGTTCACCTAAGAAGATGACCATGTTCCGCAAGCTGGC
CCTGGCCCTTCTCTGCTCCTCCGCGGTCGCCTTCCATGCACCCGCACCCG
TAAGCCGCAGCTCAGTACGCCTCCAGGCCGAGAACAAACCCGCCGCACCG
CCCGCTGCAGcccctgctgccgctgctcctgcggcggcggctgctgctcc
ccccccccccgcgaaGCCCCAACCCGTGTTCTCGAAGTCGGTGCCGTTCC
TCTTGAAGCCCAAGAACTTGGATGGGATGGTGGGCGATGTGGGCTTCGAC
CCTCTGGGCCTGGCTGAGTACGTGGACATCCGATGGCTGCGAGAGGCGGA
GCTGAAGAACGGCCGCGTCGCAATGCTTGCCTTCTTGGGCTTCGTGGTCC
AGGAATTTATCCGCCTCCCAGGAGACCTGTACTCGGAGCCCAACGGGGTC
AAAGCCTTCTTCCAAGTCGGACCCCAGCCCCTCATTCAgatcttcctctt
ctgtgGGTTTTTGGAATTCACCCTCCACAAGGGGAAGATGACGCAAATGG
ACATGTTTGCGGACGGAAAGCGCGAGCCCGGGAACTTTGGCTTTGATCCC
TTGGGTTTCGGCAAGGATCCCTCCAAACGCGAGCGACTGGCACTGGCAGA
GCTCAAGAACGGACGTCTGGCCATGATCGCGATCGGTGGTCTTATCCACC
ATGCCCTCGTGACGGGCCATGCCACGTTTAGCAGCTAAATGGCATGCCCC
CATGGCCTGAGAATCGTTAACTTTTTCACTGGTGCCCCTCAAGAGCCTAC
ACTTTTGTTCCTACGtttcctcgctcttccctcccgaaAAACTCGTGCCA
TGTCCTCCGCTTCATTCACAAatgctccttgcccttctccttcccttcag
aGTTCACCTAAGAAGATGACCATGTTCCGCAAGCTGGCCCTGGCCCTTCT
CTGCTCCTCCGCGGTCGCCTTCCATGCACCCGCACCCGTAAGCCGCAGCT
CAGTACGCCTCCAGGCCGAGAACAAACCCGCCGCACCGCCCGCTGCAGcc
cctgctgccgctgctcctgcggcggcggctgctgctccccccccccccgc
gaaGCCCCAACCCGTGTTCTCGAAGTCGGTGCCGTTCCTCTTGAAGCCCA
AGAACTTGGATGGGATGGTGGGCGATGTGGGCTTCGACCCTCTGGGCCTG
GCTGAGTACGTGGACATCCGATGGCTGCGAGAGGCGGAGCTGAAGAACGG
CCGCGTCGCAATGCTTGCCTTCTTGGGCTTCGTGGTCCAGGAATTTATCC
GCCTCCCAGGAGACCTGTACTCGGAGCCCAACGGGGTCAAAGCCTTCTTC
CAAGTCGGACCCCAGCCCCTCATTCAgatcttcctcttctgtgGGTTTTT
GGAATTCACCCTCCACAAGGGGAAGATGACGCAAATGGACATGTTTGCGG
ACGGAAAGCGCGAGCCCGGGAACTTTGGCTTTGATCCCTTGGGTTTCGGC
AAGGATCCCTCCAAACGCGAGCGACTGGCACTGGCAGAGCTCAAGAACGG
ACGTCTGGCCATGATCGCGATCGGTGGTCTTATCCACCATGCCCTCGTGA
CGGGCCATGCCACGTTTAGCAGCTAA back to top
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