EWM27030.1, cds3632 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|585109204|gb|EWM27030.1| (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0 Query: 1 MACPHGLRIVNFFTGAPQEPTLLFLRFLALPSRKTRAMSSASFTNAPCPSPSLQSSPKKMTMFRKLALALLCSSAVAFHAPAPVSRSSVRLQAENKPAAPPAAAPAAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS 295 MACPHGLRIVNFFTGAPQEPTLLFLRFLALPSRKTRAMSSASFTNAPCPSPSLQSSPKKMTMFRKLALALLCSSAVAFHAPAPVSRSSVRLQAENKPAAPPAAAPAAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS Sbjct: 1 MACPHGLRIVNFFTGAPQEPTLLFLRFLALPSRKTRAMSSASFTNAPCPSPSLQSSPKKMTMFRKLALALLCSSAVAFHAPAPVSRSSVRLQAENKPAAPPAAAPAAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS 295
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|10636356|emb|CAC10533.1| (light-harvesting protein [Galdieria sulphuraria] >gi|10933657|emb|CAC14025.1| light-harvesting protein [Galdieria sulphuraria] >gi|19912983|emb|CAC87420.1| light-harvesting protein [Galdieria sulphuraria]) HSP 1 Score: 214.157 bits (544), Expect = 1.312e-65 Identity = 101/162 (62.35%), Postives = 127/162 (78.40%), Query Frame = 0 Query: 128 SKSVPFLLKPKNLDGMV-GDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVT 288 S SVPFL +P+NLDG GDVGFDPL +++ +DI+WLRE+E+K+GR+AMLA LGF+VQEF+ LPG ++S V AFFQV L QIFLF G LEF ++KGKMT +DMF+D R+PG+FGFDPLG GKDP R R +AE+KNGRLAM+A+GG IHH +T Sbjct: 48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQTRRRYQVAEIKNGRLAMLAVGGFIHHMFLT 209
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|545701636|ref|XP_005703151.1| (light-harvesting complex protein [Galdieria sulphuraria] >gi|452819575|gb|EME26631.1| light-harvesting complex protein [Galdieria sulphuraria]) HSP 1 Score: 213.386 bits (542), Expect = 2.286e-65 Identity = 99/162 (61.11%), Postives = 128/162 (79.01%), Query Frame = 0 Query: 128 SKSVPFLLKPKNLDGMV-GDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVT 288 S SVPFL +PKNLDG GDVGFDPL +++ +DI+WLRE+E+K+GR+ MLA +GF+VQEF+ LPG+++S + A FQV L QIFLF G LEF ++KGKMT +DMF+D R+PG+FGFDPLG GKDP R+R +AE+KNGRLAM+A+GG IHH L+T Sbjct: 49 SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFVHLPGEVFSNKVAIDALFQVPSGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQARKRYEVAEIKNGRLAMLAVGGFIHHMLLT 210
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|1189384782|gb|OSX71994.1| (hypothetical protein BU14_0483s0007 [Porphyra umbilicalis]) HSP 1 Score: 194.897 bits (494), Expect = 2.735e-58 Identity = 98/162 (60.49%), Postives = 119/162 (73.46%), Query Frame = 0 Query: 128 SKSVPFLLKPKNLDG-MVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGK-DPSKRERLALAELKNGRLAMIAIGGLIHHALV 287 S SVPFL +P DG M GDVGFDPL L+ ++DI+WLRE ELKNGRVAMLAFLG +VQEF+ LP L++ P AFFQV L Q+FL CG EF H+GK++ DMF DG R PGNFGFDPLG K P+++++L LAE+KNGRLAMI IGG+IH + Sbjct: 35 SASVPFLPQPAACDGSMAGDVGFDPLNLSGFIDIKWLREGELKNGRVAMLAFLGVLVQEFVHLPSPLFANPVATDAFFQVPAGGLWQVFLACGLCEFVSHRGKLSYDDMFEDG-RIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIHSNFI 195
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|299470276|emb|CBN79580.1| (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 194.897 bits (494), Expect = 6.542e-58 Identity = 95/166 (57.23%), Postives = 120/166 (72.29%), Query Frame = 0 Query: 125 PVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSK-RERLALAELKNGRLAMIAIGGLIHHALVTG 289 P S S+PFL +PKNL+GMVGD+GFDP G A ++++REAELK+GRVAMLA +G++V E + +PG Y N V A VGP P++QIFLFCGFLE+ H GKMT +M DG EPG+FGFDP+ K P+ RE+ L E+KNGRLAM AIGGLIH +L+ G Sbjct: 63 PAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDG-NEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLG 227
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|551637897|ref|XP_005821765.1| (light-harvesting Chl a protein 9 [Guillardia theta CCMP2712] >gi|158147519|emb|CAM33412.1| light harvesting complex protein 9 precursor [Guillardia theta] >gi|428165797|gb|EKX34785.1| light-harvesting Chl a protein 9 [Guillardia theta CCMP2712]) HSP 1 Score: 191.43 bits (485), Expect = 8.709e-57 Identity = 97/163 (59.51%), Postives = 117/163 (71.78%), Query Frame = 0 Query: 128 SKSVPFLLKPKNLDG-MVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTG 289 S+SVPFL +P LDG MVGDVGFDP G + DI+WLRE+ELK+GRV MLA LG++VQEF+ LP + S P G +AF+QV L QIF F G +E H KM+ MF+DG R PGNFGFDPLGFGK+P R R LAELKNGRLAM+ G+IH + +TG Sbjct: 42 SQSVPFLPRPAALDGKMVGDVGFDPFGFSSKYDIKWLRESELKHGRVCMLASLGYIVQEFVHLPFEATSNPVGSEAFYQVPAGGLWQIFAFIGAIEHFSHNFKMSGSTMFSDG-RTPGNFGFDPLGFGKNPQARARYELAELKNGRLAMLGFSGMIHGSFITG 203
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|219115657|ref|XP_002178624.1| (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410359|gb|EEC50289.1| protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 187.193 bits (474), Expect = 1.938e-55 Identity = 92/168 (54.76%), Postives = 120/168 (71.43%), Query Frame = 0 Query: 128 SKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKR--ERLALAELKNGRLAMIAIGGLIHHALVTGHATF 293 SKS+PFL PKN G VGDVGFDPLG ++ D++WLRE+E+K+GR AMLA +GFV+Q+F LPG ++ + + + A G P++QI G LE+ +KGK+T DMF+D REPGN GFDP+G K+ SK E + L E+KNGRLAM+AIGG+IHH VTG A F Sbjct: 34 SKSMPFLTAPKNTGGYVGDVGFDPLGFSDNFDMKWLRESEIKHGRAAMLATVGFVMQQFWTLPGMVHVDDSNL-APGAAGISPMLQIVFGMGALEWWTNKGKVTMEDMFSDSSREPGNLGFDPMGMSKNKSKEEAEAMQLKEIKNGRLAMLAIGGMIHHNWVTGEALF 200
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|1210529918|dbj|GAX11451.1| (light-harvesting complex I chlorophyll a/b binding protein 4 [Fistulifera solaris]) HSP 1 Score: 182.956 bits (463), Expect = 8.502e-54 Identity = 91/165 (55.15%), Postives = 115/165 (69.70%), Query Frame = 0 Query: 128 SKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGF--GKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGH 290 SKS+PFL PKN G VGDVGFDPLG ++Y D++WLRE+E+K+ R AMLA LGFVVQ+F+ LPG + + + A VGP P++QIF G LEF + GK+T +MF+D R PGNFGFDPLG GK + L E+KNGRLAM AIGG++ H +VTG Sbjct: 33 SKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFVVQQFVTLPG-MPDVDDSMLAPAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIVTGE 196
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|1210525249|dbj|GAX16008.1| (light-harvesting complex I chlorophyll a/b binding protein 4 [Fistulifera solaris]) HSP 1 Score: 181.8 bits (460), Expect = 2.277e-53 Identity = 91/168 (54.17%), Postives = 116/168 (69.05%), Query Frame = 0 Query: 128 SKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGF--GKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATF 293 SKS+PFL PKN G VGDVGFDPLG ++Y D++WLRE+E+K+ R AMLA LGF+VQ+F+ LPG + + + A VGP P++QIF G LEF + GK+T +MF+D R PGNFGFDPLG GK + L E+KNGRLAM AIGG++ H +VTG F Sbjct: 33 SKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFMVQQFVTLPG-MPDVDDSMLAPAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIVTGEPLF 199
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|77024117|gb|ABA55529.1| (chloroplast light harvesting protein isoform 13 [Isochrysis galbana]) HSP 1 Score: 178.333 bits (451), Expect = 8.471e-52 Identity = 99/203 (48.77%), Postives = 123/203 (60.59%), Query Frame = 0 Query: 97 PAAPPAAAPAAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKP----KNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS 295 PAA PA ++ A A P SK+VPFL P L G + GFDPL L+EY+DI+W REAELK+GR+ MLA G+ QEF+ LPG PNG++A V P+ L QI LF +E+ + K TQ MF D KREPGN GFDPL FG + + R RL +AELKNGRLAM+A G+IH LVTG ++S Sbjct: 14 PAAMPAVQVTRSSGVNMAIANP---------SKAVPFLSAPPCQSSKLAG--AETGFDPLYLSEYIDIKWAREAELKHGRICMLAATGYFFQEFLALPGFPGYTPNGIEAATSVSPESLAQIVLFMSVVEYNSNLNKWTQDTMFTDPKREPGNLGFDPLHFGDNKASRARLEMAELKNGRLAMLAFSGMIHQTLVTGKPVWAS 205 The following BLAST results are available for this feature:
BLAST of EWM27030.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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