EWM27030.1, cds3632 (CDS) Nannochloropsis gaditana

Overview
NameEWM27030.1
Unique Namecds3632
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:867002..867512 +
Alignment locationCM002461.1:867814..868190 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27030.1
Productlight-harvesting protein
Orig transcript idgnl|cribi|Naga_100056g15.10443.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:867002..867512 +
CM002461.1supercontigCM002461.1:867814..868190 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0009507chloroplast
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
GO:0009765photosynthesis, light harvesting
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR023329Chlorophyll_a/b-bd_dom
IPR022796Chloroa_b-bind
Homology
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|585109204|gb|EWM27030.1| (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MACPHGLRIVNFFTGAPQEPTLLFLRFLALPSRKTRAMSSASFTNAPCPSPSLQSSPKKMTMFRKLALALLCSSAVAFHAPAPVSRSSVRLQAENKPAAPPAAAPAAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS 295
            MACPHGLRIVNFFTGAPQEPTLLFLRFLALPSRKTRAMSSASFTNAPCPSPSLQSSPKKMTMFRKLALALLCSSAVAFHAPAPVSRSSVRLQAENKPAAPPAAAPAAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS
Sbjct:    1 MACPHGLRIVNFFTGAPQEPTLLFLRFLALPSRKTRAMSSASFTNAPCPSPSLQSSPKKMTMFRKLALALLCSSAVAFHAPAPVSRSSVRLQAENKPAAPPAAAPAAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS 295          
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|10636356|emb|CAC10533.1| (light-harvesting protein [Galdieria sulphuraria] >gi|10933657|emb|CAC14025.1| light-harvesting protein [Galdieria sulphuraria] >gi|19912983|emb|CAC87420.1| light-harvesting protein [Galdieria sulphuraria])

HSP 1 Score: 214.157 bits (544), Expect = 1.312e-65
Identity = 101/162 (62.35%), Postives = 127/162 (78.40%), Query Frame = 0
Query:  128 SKSVPFLLKPKNLDGMV-GDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVT 288
            S SVPFL +P+NLDG   GDVGFDPL +++ +DI+WLRE+E+K+GR+AMLA LGF+VQEF+ LPG ++S    V AFFQV    L QIFLF G LEF ++KGKMT +DMF+D  R+PG+FGFDPLG GKDP  R R  +AE+KNGRLAM+A+GG IHH  +T
Sbjct:   48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQTRRRYQVAEIKNGRLAMLAVGGFIHHMFLT 209          
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|545701636|ref|XP_005703151.1| (light-harvesting complex protein [Galdieria sulphuraria] >gi|452819575|gb|EME26631.1| light-harvesting complex protein [Galdieria sulphuraria])

HSP 1 Score: 213.386 bits (542), Expect = 2.286e-65
Identity = 99/162 (61.11%), Postives = 128/162 (79.01%), Query Frame = 0
Query:  128 SKSVPFLLKPKNLDGMV-GDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVT 288
            S SVPFL +PKNLDG   GDVGFDPL +++ +DI+WLRE+E+K+GR+ MLA +GF+VQEF+ LPG+++S    + A FQV    L QIFLF G LEF ++KGKMT +DMF+D  R+PG+FGFDPLG GKDP  R+R  +AE+KNGRLAM+A+GG IHH L+T
Sbjct:   49 SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFVHLPGEVFSNKVAIDALFQVPSGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQARKRYEVAEIKNGRLAMLAVGGFIHHMLLT 210          
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|1189384782|gb|OSX71994.1| (hypothetical protein BU14_0483s0007 [Porphyra umbilicalis])

HSP 1 Score: 194.897 bits (494), Expect = 2.735e-58
Identity = 98/162 (60.49%), Postives = 119/162 (73.46%), Query Frame = 0
Query:  128 SKSVPFLLKPKNLDG-MVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGK-DPSKRERLALAELKNGRLAMIAIGGLIHHALV 287
            S SVPFL +P   DG M GDVGFDPL L+ ++DI+WLRE ELKNGRVAMLAFLG +VQEF+ LP  L++ P    AFFQV    L Q+FL CG  EF  H+GK++  DMF DG R PGNFGFDPLG  K  P+++++L LAE+KNGRLAMI IGG+IH   +
Sbjct:   35 SASVPFLPQPAACDGSMAGDVGFDPLNLSGFIDIKWLREGELKNGRVAMLAFLGVLVQEFVHLPSPLFANPVATDAFFQVPAGGLWQVFLACGLCEFVSHRGKLSYDDMFEDG-RIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIHSNFI 195          
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|299470276|emb|CBN79580.1| (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 194.897 bits (494), Expect = 6.542e-58
Identity = 95/166 (57.23%), Postives = 120/166 (72.29%), Query Frame = 0
Query:  125 PVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSK-RERLALAELKNGRLAMIAIGGLIHHALVTG 289
            P  S S+PFL +PKNL+GMVGD+GFDP G A    ++++REAELK+GRVAMLA +G++V E + +PG  Y   N V A   VGP P++QIFLFCGFLE+  H GKMT  +M  DG  EPG+FGFDP+   K P+  RE+  L E+KNGRLAM AIGGLIH +L+ G
Sbjct:   63 PAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDG-NEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLG 227          
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|551637897|ref|XP_005821765.1| (light-harvesting Chl a protein 9 [Guillardia theta CCMP2712] >gi|158147519|emb|CAM33412.1| light harvesting complex protein 9 precursor [Guillardia theta] >gi|428165797|gb|EKX34785.1| light-harvesting Chl a protein 9 [Guillardia theta CCMP2712])

HSP 1 Score: 191.43 bits (485), Expect = 8.709e-57
Identity = 97/163 (59.51%), Postives = 117/163 (71.78%), Query Frame = 0
Query:  128 SKSVPFLLKPKNLDG-MVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTG 289
            S+SVPFL +P  LDG MVGDVGFDP G +   DI+WLRE+ELK+GRV MLA LG++VQEF+ LP +  S P G +AF+QV    L QIF F G +E   H  KM+   MF+DG R PGNFGFDPLGFGK+P  R R  LAELKNGRLAM+   G+IH + +TG
Sbjct:   42 SQSVPFLPRPAALDGKMVGDVGFDPFGFSSKYDIKWLRESELKHGRVCMLASLGYIVQEFVHLPFEATSNPVGSEAFYQVPAGGLWQIFAFIGAIEHFSHNFKMSGSTMFSDG-RTPGNFGFDPLGFGKNPQARARYELAELKNGRLAMLGFSGMIHGSFITG 203          
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|219115657|ref|XP_002178624.1| (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410359|gb|EEC50289.1| protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 187.193 bits (474), Expect = 1.938e-55
Identity = 92/168 (54.76%), Postives = 120/168 (71.43%), Query Frame = 0
Query:  128 SKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKR--ERLALAELKNGRLAMIAIGGLIHHALVTGHATF 293
            SKS+PFL  PKN  G VGDVGFDPLG ++  D++WLRE+E+K+GR AMLA +GFV+Q+F  LPG ++ + + + A    G  P++QI    G LE+  +KGK+T  DMF+D  REPGN GFDP+G  K+ SK   E + L E+KNGRLAM+AIGG+IHH  VTG A F
Sbjct:   34 SKSMPFLTAPKNTGGYVGDVGFDPLGFSDNFDMKWLRESEIKHGRAAMLATVGFVMQQFWTLPGMVHVDDSNL-APGAAGISPMLQIVFGMGALEWWTNKGKVTMEDMFSDSSREPGNLGFDPMGMSKNKSKEEAEAMQLKEIKNGRLAMLAIGGMIHHNWVTGEALF 200          
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|1210529918|dbj|GAX11451.1| (light-harvesting complex I chlorophyll a/b binding protein 4 [Fistulifera solaris])

HSP 1 Score: 182.956 bits (463), Expect = 8.502e-54
Identity = 91/165 (55.15%), Postives = 115/165 (69.70%), Query Frame = 0
Query:  128 SKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGF--GKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGH 290
            SKS+PFL  PKN  G VGDVGFDPLG ++Y D++WLRE+E+K+ R AMLA LGFVVQ+F+ LPG +    + + A   VGP P++QIF   G LEF  + GK+T  +MF+D  R PGNFGFDPLG   GK       + L E+KNGRLAM AIGG++ H +VTG 
Sbjct:   33 SKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFVVQQFVTLPG-MPDVDDSMLAPAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIVTGE 196          
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|1210525249|dbj|GAX16008.1| (light-harvesting complex I chlorophyll a/b binding protein 4 [Fistulifera solaris])

HSP 1 Score: 181.8 bits (460), Expect = 2.277e-53
Identity = 91/168 (54.17%), Postives = 116/168 (69.05%), Query Frame = 0
Query:  128 SKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGF--GKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATF 293
            SKS+PFL  PKN  G VGDVGFDPLG ++Y D++WLRE+E+K+ R AMLA LGF+VQ+F+ LPG +    + + A   VGP P++QIF   G LEF  + GK+T  +MF+D  R PGNFGFDPLG   GK       + L E+KNGRLAM AIGG++ H +VTG   F
Sbjct:   33 SKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFMVQQFVTLPG-MPDVDDSMLAPAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIVTGEPLF 199          
BLAST of EWM27030.1 vs. NCBI_GenBank
Match: gi|77024117|gb|ABA55529.1| (chloroplast light harvesting protein isoform 13 [Isochrysis galbana])

HSP 1 Score: 178.333 bits (451), Expect = 8.471e-52
Identity = 99/203 (48.77%), Postives = 123/203 (60.59%), Query Frame = 0
Query:   97 PAAPPAAAPAAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKP----KNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS 295
            PAA PA     ++    A A P         SK+VPFL  P      L G   + GFDPL L+EY+DI+W REAELK+GR+ MLA  G+  QEF+ LPG     PNG++A   V P+ L QI LF   +E+  +  K TQ  MF D KREPGN GFDPL FG + + R RL +AELKNGRLAM+A  G+IH  LVTG   ++S
Sbjct:   14 PAAMPAVQVTRSSGVNMAIANP---------SKAVPFLSAPPCQSSKLAG--AETGFDPLYLSEYIDIKWAREAELKHGRICMLAATGYFFQEFLALPGFPGYTPNGIEAATSVSPESLAQIVLFMSVVEYNSNLNKWTQDTMFTDPKREPGNLGFDPLHFGDNKASRARLEMAELKNGRLAMLAFSGMIHQTLVTGKPVWAS 205          
The following BLAST results are available for this feature:
BLAST of EWM27030.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109204|gb|EWM27030.1|0.000e+0100.00light-harvesting protein [Nannochloropsis gaditana... [more]
gi|10636356|emb|CAC10533.1|1.312e-6562.35light-harvesting protein [Galdieria sulphuraria] >... [more]
gi|545701636|ref|XP_005703151.1|2.286e-6561.11light-harvesting complex protein [Galdieria sulphu... [more]
gi|1189384782|gb|OSX71994.1|2.735e-5860.49hypothetical protein BU14_0483s0007 [Porphyra umbi... [more]
gi|299470276|emb|CBN79580.1|6.542e-5857.23Light harvesting complex protein [Ectocarpus silic... [more]
gi|551637897|ref|XP_005821765.1|8.709e-5759.51light-harvesting Chl a protein 9 [Guillardia theta... [more]
gi|219115657|ref|XP_002178624.1|1.938e-5554.76protein fucoxanthin chlorophyll a/c protein [Phaeo... [more]
gi|1210529918|dbj|GAX11451.1|8.502e-5455.15light-harvesting complex I chlorophyll a/b binding... [more]
gi|1210525249|dbj|GAX16008.1|2.277e-5354.17light-harvesting complex I chlorophyll a/b binding... [more]
gi|77024117|gb|ABA55529.1|8.471e-5248.77chloroplast light harvesting protein isoform 13 [I... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3641rna3641Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications