|
|
Properties
| Property Name | Value |
|---|
| Product | small-conductance mechanosensitive channel |
| Orig transcript id | gnl|cribi|Naga_100003g132.1866.mrna |
| Orig protein id | gnl|cribi|Naga_100003g132.1866 |
| Gene | MscS |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:884717..887881 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna364 ID=rna364|Name=rna364|organism=Nannochloropsis gaditana|type=mRNA|length=1566bp
ATGAACGGTACACCTCTCGACGTGAAGACGGCCAAATGGGAGGACGTGGA
GATGCGGCTGCCAAAAGGCAACGGGGGCTACACGGCCATGGAGGTGTTTG
AAGATGTGAAAGGCTGCACAGCGTACACGTACGATGATCTGATTTTAATG
CCATCTCATATCGACTTCGGTGTAAACGAGGTAATTTTAGAGAGTAAATT
CACGCGCAATATTGCTTTGAAGACCCCAATGGCGTCGTCGCCCATGGACA
CCGTGACCGAGGACAAAATGGCCATCATGATGGCCTTACACGGCGGCATT
GGTGTGGTCCATTACAACTGCACAATCAGCGAGCAGGCAGAGATGGTCAA
TAAGGTTAAGAAGTATAAGAATGGTTTCATCCACGATCCCATTGTTCTGG
GCCCTGACAACACGGTAGCTGATGTCGAGCGAATTACAGCTGCGAAAGGA
TTCGCAGGATTTCCGATAACGGAAAATGGAAAATTGGGAGGGCGCCTGGT
AGGGATGATTGCCCGCCGGGACGTTGACTTCGTGGATGATAAGGATACCA
AGCTCTCCAAGCTTATGGTCACGGATGTGGTGACGGCTAAGGATGGCGTT
ACTTTGGAGCAGGCGAATGCCATCATCCGCACCTCGAAGAAAGGGAAATT
ACCTATTGTGAATGATGCCGGCGAATTAGTGTCGCTCATCTCGCGAGCCG
ATATTAAAAAGAGTCGGGACTATCCCTTGGCCTCGAAGGATGCGAACAAG
CAATTGTTGTGCGGGGCAGCAATCGGCACTCGTCCCAGCGATCGAGACCG
TTTATCTGCCCTGGTGGCTGCAGGAGTCGACGTCATTATCATCGACTCAT
CCCAAGGCGACTCTATATTTCAGTACGAAATGATTTCACACATTAAAACC
GCATTCCCCGATGTCCAAGTTGTTGCTGGAAACGTTGTAACAGCTCAACA
AGCGTTTAACCTCATAAAGGCAGGCGCGGATGGTCTGCGTGTGGGAATGG
GATCTGGCTCGATCTGTACTACTCAGGAGGTATGCGCAGCCGGGCGCGCG
GCTTGCTCTGCCATTTATCACACCAGCCGACTGGCCGGAATGTTTGGCGT
TCCTGTAATCGCAGACGGGGGCATTGGGAGCACGGGTCACATAGTGAAAG
CATTCTCTGTGGGAGCGTCTTGTGTCATGATGGGTTCGTTGCTTGCAGGA
ACTGAGGAGGCTCCGGGCGAATATTTCTATCAGGATGGCGTCCGCTTGAA
GCGATACCGCGGCATGGGGTCTGTTGAGGCAATGGCTAAGGGCTCGGAAA
AGCGCTACTTTGCCTCTAATGCTGTTGTCAAGGTAGCCCAGGGTGTAAGT
GGTGCCGTCACGGACCGTGGCTCCATGGGACGTTACATCCCCTACCTTAC
AACGGGCGTGCGCCATGGACTTCAGGATCTGGGTACCATCTCACTGGCCG
ACCTTCACAAGCGACGGGAGTCAGGTTTGCTGCGCTTTGAGGTGAGGTCT
CCAGCCGCGCAGCGCGAGGGTGGAGTGCATGGCTTACACATGCATGAACG
GAAGCTCTTCTCCTAG back to topprotein sequence of rna364 >rna364-protein ID=rna364-protein|Name=rna364|organism=Nannochloropsis gaditana|type=polypeptide|length=715bp
MILRKSDENSTAGCGNSSATYVLSQNSDRRLSCALWSQSNAGQGICSAQD
RVEGLCPPSSSQVHVATRHRSPPFLPCAWKKPSSHTLLAVLILLAVETAP
SSGQSAPPTFACYPPHLHHRVSPICRHLVRHCGPSRPIRWSSMRIDWFSG
PKIAEPVPRKGALSSLVLDPVRRAVELFPNSKGVIDQVWTMLPLALRALI
NPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGIMDEPRVYEDSVLGFM
EPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAY
FVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAF
LKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSF
TTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHR
RFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYC
LSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVS
KELGQSLITGVVDYQNELEQVAASGGGGGDRGSNTNNADSMKGAGQQGDF
SVGFNVPPNPINPLNSGGGNSVPGPGEDNSGSPGPRPTRGVRVMQNMRAD
DDNVMTTSVMPGPPFPPPPPPSSTQHSSQSSSVPENSSRGPFPPPVSAAS
PSGPYADLSQDAVVA back to topmRNA from alignment at CM002455.1:884717..887881+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna364 ID=rna364|Name=rna364|organism=Nannochloropsis gaditana|type=mRNA|length=3165bp|location=Sequence derived from alignment at CM002455.1:884717..887881+ (Nannochloropsis gaditana)
ATAGGGAGCGAAGACTCCAACAAAGAAGATAACGAGGCGTGGCTTTATCA
CACCATAGGCAGTATCACGTGTTTTCTTGGTGTTGTGTACCTTCCGCTAT
GATGATTTCCAAATTTCTTATAGAATCCTCCTGAAGCATCAGCCAGGGCG
TGTCAATTCACGATGATTTCGATACCTCTCGAAAAATGAgtgtccttttc
cttggGAATAGCTGGATTCAGGCAGCATAGAATGTGAACTATTGACCGAA
TTGCCTATGCTTTCGGAGTCGGGAGCATTCATATTTTGCTTGGTACCTCC
CAGAGAGATTGCTCAACTCCGCATTACATACATCATTCTTAAAAAAGTTC
TACCTGATATTCAATGCACAAATAGGTGCCAGCTCAAAGTGCAGCAGTTT
CAGTCTCACGACTGCCCAATCATTGCATTGTAGTAATTTGTTGGCGTAAC
GCTGGTCATAAGCAATACGTGTAGTACATTACTTGGCCACGCATCGCTAC
TGATCTCGGTCGGTACGAATCACATGATCTTGAGAAAATCTGATGAAAAC
TCGACTGCAGGTTGTGGCAATAGCAGCGCTACGTACGTTTTGTCTCAAAA
TTCTGATAGGCGCCTGTCTTGTGCATTGTGGTCTCAATCCAATGCTGGGC
AAGGGATATGTAGCGCACAGGACAGAGTGGAGGGTTTATGTCCGCCGTCT
TCATCCCAGGTCCACGTGGCCACGAGGCATCGgtcacctcccttccttcc
ctgtgCATGGAAAAAGCCTTCCAGTCATACTCTTCTTGCGGTCCTTATTT
TGCTCGCGGTGGAGACTGCTCCTTCGAGTGGGCAGTCAGCTCCCCCAACC
TTTGCTTGctaccctccccacctgcaTCACCGCGTCTCTCCGATATGCCG
ACATTTAGTCAGGCACTGTGGCCCGAGCAGACCAATTCGCTGGTCAAGCA
TGCGTATTGATTGGTTTTCCGGCCCCAAGATTGCCGAGCCAGTACCTCGT
AAAGGAGCTCTGTCGTCGCTTGTGCTAGATCCTGTGCGACGGGCCGTGGA
ACTCTTCCCAAACTCAAAAGGGGTCATTGATCAGGTTTGGACAATGCTGC
CATTGGCTCTTCGGGCGCTTATTAATCCGTCTGATTTGCTTTTATTCGTC
ACGACACGTCTACTGTACCGCAAAGCTTGCAGGGCTCTTCATGCCTTTCA
CCACTTCTTGTGGAAGCGTGCGGGAATCATGGACGAGCCGCGTGTGTACG
AAGATTCCGTACTGGGCTTCATGGAGCCTAAATTGGGAACTTTGACGTCT
TTTATCGGCGTCACGTATGTTATAAATGTGGTGCTCTCTTTGCTGATCGA
TATTGGCTGGCGAGTGAGAGCCGACTCTGCACGACTTATGGCGTCGCTTT
TGTACATTGCGTACGGGGCATATTTTGTTAACGAGGTCAAAAAGGAATAT
TTGACGACATGGGTACCATCTTTGCAAGAAGATCGGCGCCGCTCCTACAT
AATCGACCGTTCTTCATCGGTAGTACTCTGGATATTGGCGATCTTCTCCT
GTATTGAGTGCATCTCAGCTTTTCTCAAGATTCCTCTCTCGTCCACGCTA
GCTTTTGGAGGGATCGGGGGTCTTGCATTTGGGTTAGCATCTAAAGACGT
GGTGAGcaatttttttgggggagTCATGCTTCTTTTCACGGAGCCGTTCA
CGCCAGGAGATATGGTCTCTTTCACAACGCGCGGCACGCACTACGAGGGA
AAGGTAGAGCGCGTCGGTTTCTACCAAACCCGGCTGAGGGGTCGTGACAC
GCGACCTACGTACGTCCCTAATTCGGTTTTCGTGGATACAATGGTCACGA
ATATGGACAGAATCACGCACAGACGCTTTGaggcctccttctcgctgcGC
TTTCAGGACTTCGAGACCTTACCGGAAGTTATTTTGGAGATCAAGAAAGC
GCTGCGTGTGCTGCCCAAGGTTGACGTATTATCGCCCTTTCGTGTACATT
TCACACAGTTTGGATCGTACTGCTTGAGCCTGACAGCCTCATGTTATTTT
GCAACCAAGAGTTTGGACGAATACTTGTATTTGCAGCAGTTGGCGCTCAT
GGAGATCACACGCGTGGTAACCGAGTGTGGATGTCGTTTCGCGTACCCAA
CTACCCATCTCGATCTTGTCTCCAAGGAACTGGGCCAGAGTCTGATTACC
GGCGTCGTTGACTATCAGAACGAGCTCGAGCAGGTGGCTGCcagtggcgg
tggcggtggggacaGAGGCAGCAATACCAACAACGCTGACTCCATGAAGG
GGGCTGGACAGCAGGGGGACTTCTCTGTGGGATTCAATGTTCCGCCAAAC
CCTATCAACCCCTTGAACAGCGGGGGCGGGAATAGCGTGCCAGGACCTGG
GGAAGACAACTCCGGGAGTCCAGGACCGCGGCCCACACGTGGAGTGCGAG
TGATGCAAAATATGCGTGCGGACGACGACAATGTTATGACTACCAGCGTC
ATGCCAGgtccgccctttccccctcccccgccaccgtctTCAACACAGCA
TTCATCCCAATCCTCTTCAGTGCCCGAAAATTCGTCTCgcggtcctttcc
ccccgccagTAAGCGCCGCTTCACCCTCGGGACCCTATGCGGATCTATCA
CAGGACGCCGTGGTAGCATGAGATAGTTGCCTCtatgagaagggaggggt
tcACTATGCTACCCATGTATTTCATTTTCCATGTAATTATCATATAAAGA
TGTCATTCTATTCGTGAAGCACGCAAGCCGCTCTTGTGTCGAACTATTGT
TCTTGACACTTCGTTGGAGCGGAACCCTCTGTCCTTCCCGGGGCCTTCTT
CAGACCAAGGTTACACGAGTTGTCTGAACGTCTCTGGTTCGACCAACTGT
TGAGTCTGAACGTCTCTGGTTCGACCAACTGTTGAGCTCTTTTTGCCGAC
TTTTACAGCTTTCTGACGTGTCGATCAAAGAATAAAGACATGCGATCACT
TTATTACGTAACCATGGAACACATGTAGATTGACGCACCGCTGCAATGAA
TGAAAATTTCTTTCGGCCTCGAGACTGAAGTTTGCATGTACTGGCATATT
TGCTTCCCTTTCAGGTCGCATATTTAAAAGGACACCAAGAGAAAGCAGAA
TGGAGGCTATTAAGA back to topCoding sequence (CDS) from alignment at CM002455.1:884717..887881+ >rna364 ID=rna364|Name=rna364|organism=Nannochloropsis gaditana|type=CDS|length=2148bp|location=Sequence derived from alignment at CM002455.1:884717..887881+ (Nannochloropsis gaditana)
ATGATCTTGAGAAAATCTGATGAAAACTCGACTGCAGGTTGTGGCAATAG
CAGCGCTACGTACGTTTTGTCTCAAAATTCTGATAGGCGCCTGTCTTGTG
CATTGTGGTCTCAATCCAATGCTGGGCAAGGGATATGTAGCGCACAGGAC
AGAGTGGAGGGTTTATGTCCGCCGTCTTCATCCCAGGTCCACGTGGCCAC
GAGGCATCGgtcacctcccttccttccctgtgCATGGAAAAAGCCTTCCA
GTCATACTCTTCTTGCGGTCCTTATTTTGCTCGCGGTGGAGACTGCTCCT
TCGAGTGGGCAGTCAGCTCCCCCAACCTTTGCTTGctaccctccccacct
gcaTCACCGCGTCTCTCCGATATGCCGACATTTAGTCAGGCACTGTGGCC
CGAGCAGACCAATTCGCTGGTCAAGCATGCGTATTGATTGGTTTTCCGGC
CCCAAGATTGCCGAGCCAGTACCTCGTAAAGGAGCTCTGTCGTCGCTTGT
GCTAGATCCTGTGCGACGGGCCGTGGAACTCTTCCCAAACTCAAAAGGGG
TCATTGATCAGGTTTGGACAATGCTGCCATTGGCTCTTCGGGCGCTTATT
AATCCGTCTGATTTGCTTTTATTCGTCACGACACGTCTACTGTACCGCAA
AGCTTGCAGGGCTCTTCATGCCTTTCACCACTTCTTGTGGAAGCGTGCGG
GAATCATGGACGAGCCGCGTGTGTACGAAGATTCCGTACTGGGCTTCATG
GAGCCTAAATTGGGAACTTTGACGTCTTTTATCGGCGTCACGTATGTTAT
AAATGTGGTGCTCTCTTTGCTGATCGATATTGGCTGGCGAGTGAGAGCCG
ACTCTGCACGACTTATGGCGTCGCTTTTGTACATTGCGTACGGGGCATAT
TTTGTTAACGAGGTCAAAAAGGAATATTTGACGACATGGGTACCATCTTT
GCAAGAAGATCGGCGCCGCTCCTACATAATCGACCGTTCTTCATCGGTAG
TACTCTGGATATTGGCGATCTTCTCCTGTATTGAGTGCATCTCAGCTTTT
CTCAAGATTCCTCTCTCGTCCACGCTAGCTTTTGGAGGGATCGGGGGTCT
TGCATTTGGGTTAGCATCTAAAGACGTGGTGAGcaatttttttgggggag
TCATGCTTCTTTTCACGGAGCCGTTCACGCCAGGAGATATGGTCTCTTTC
ACAACGCGCGGCACGCACTACGAGGGAAAGGTAGAGCGCGTCGGTTTCTA
CCAAACCCGGCTGAGGGGTCGTGACACGCGACCTACGTACGTCCCTAATT
CGGTTTTCGTGGATACAATGGTCACGAATATGGACAGAATCACGCACAGA
CGCTTTGaggcctccttctcgctgcGCTTTCAGGACTTCGAGACCTTACC
GGAAGTTATTTTGGAGATCAAGAAAGCGCTGCGTGTGCTGCCCAAGGTTG
ACGTATTATCGCCCTTTCGTGTACATTTCACACAGTTTGGATCGTACTGC
TTGAGCCTGACAGCCTCATGTTATTTTGCAACCAAGAGTTTGGACGAATA
CTTGTATTTGCAGCAGTTGGCGCTCATGGAGATCACACGCGTGGTAACCG
AGTGTGGATGTCGTTTCGCGTACCCAACTACCCATCTCGATCTTGTCTCC
AAGGAACTGGGCCAGAGTCTGATTACCGGCGTCGTTGACTATCAGAACGA
GCTCGAGCAGGTGGCTGCcagtggcggtggcggtggggacaGAGGCAGCA
ATACCAACAACGCTGACTCCATGAAGGGGGCTGGACAGCAGGGGGACTTC
TCTGTGGGATTCAATGTTCCGCCAAACCCTATCAACCCCTTGAACAGCGG
GGGCGGGAATAGCGTGCCAGGACCTGGGGAAGACAACTCCGGGAGTCCAG
GACCGCGGCCCACACGTGGAGTGCGAGTGATGCAAAATATGCGTGCGGAC
GACGACAATGTTATGACTACCAGCGTCATGCCAGgtccgccctttccccc
tcccccgccaccgtctTCAACACAGCATTCATCCCAATCCTCTTCAGTGC
CCGAAAATTCGTCTCgcggtcctttccccccgccagTAAGCGCCGCTTCA
CCCTCGGGACCCTATGCGGATCTATCACAGGACGCCGTGGTAGCATGA back to top
|