EWM30349.1, cds364 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|585113008|gb|EWM30349.1| (small-conductance mechanosensitive channel [Nannochloropsis gaditana]) HSP 1 Score: 1469.14 bits (3802), Expect = 0.000e+0 Identity = 715/715 (100.00%), Postives = 715/715 (100.00%), Query Frame = 0
Query: 1 MILRKSDENSTAGCGNSSATYVLSQNSDRRLSCALWSQSNAGQGICSAQDRVEGLCPPSSSQVHVATRHRSPPFLPCAWKKPSSHTLLAVLILLAVETAPSSGQSAPPTFACYPPHLHHRVSPICRHLVRHCGPSRPIRWSSMRIDWFSGPKIAEPVPRKGALSSLVLDPVRRAVELFPNSKGVIDQVWTMLPLALRALINPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGIMDEPRVYEDSVLGFMEPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVSKELGQSLITGVVDYQNELEQVAASGGGGGDRGSNTNNADSMKGAGQQGDFSVGFNVPPNPINPLNSGGGNSVPGPGEDNSGSPGPRPTRGVRVMQNMRADDDNVMTTSVMPGPPFPPPPPPSSTQHSSQSSSVPENSSRGPFPPPVSAASPSGPYADLSQDAVVA 715
MILRKSDENSTAGCGNSSATYVLSQNSDRRLSCALWSQSNAGQGICSAQDRVEGLCPPSSSQVHVATRHRSPPFLPCAWKKPSSHTLLAVLILLAVETAPSSGQSAPPTFACYPPHLHHRVSPICRHLVRHCGPSRPIRWSSMRIDWFSGPKIAEPVPRKGALSSLVLDPVRRAVELFPNSKGVIDQVWTMLPLALRALINPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGIMDEPRVYEDSVLGFMEPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVSKELGQSLITGVVDYQNELEQVAASGGGGGDRGSNTNNADSMKGAGQQGDFSVGFNVPPNPINPLNSGGGNSVPGPGEDNSGSPGPRPTRGVRVMQNMRADDDNVMTTSVMPGPPFPPPPPPSSTQHSSQSSSVPENSSRGPFPPPVSAASPSGPYADLSQDAVVA
Sbjct: 1 MILRKSDENSTAGCGNSSATYVLSQNSDRRLSCALWSQSNAGQGICSAQDRVEGLCPPSSSQVHVATRHRSPPFLPCAWKKPSSHTLLAVLILLAVETAPSSGQSAPPTFACYPPHLHHRVSPICRHLVRHCGPSRPIRWSSMRIDWFSGPKIAEPVPRKGALSSLVLDPVRRAVELFPNSKGVIDQVWTMLPLALRALINPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGIMDEPRVYEDSVLGFMEPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVSKELGQSLITGVVDYQNELEQVAASGGGGGDRGSNTNNADSMKGAGQQGDFSVGFNVPPNPINPLNSGGGNSVPGPGEDNSGSPGPRPTRGVRVMQNMRADDDNVMTTSVMPGPPFPPPPPPSSTQHSSQSSSVPENSSRGPFPPPVSAASPSGPYADLSQDAVVA 715
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|298715514|emb|CBJ28084.1| (Small Conductance Mechanosensitive Ion channel [Ectocarpus siliculosus]) HSP 1 Score: 340.502 bits (872), Expect = 3.643e-106 Identity = 196/428 (45.79%), Postives = 272/428 (63.55%), Query Frame = 0
Query: 196 LRALINPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGIMDEPRVYEDSVLGFMEPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVS-KELGQSLITGVVDYQNELEQVAASGGGGGDRGSNTNNADSMKGAGQQGDFSVGFNVPPNPINPLNSGGGNSV 622
L ++ P L LF+ +++YR+ R L+ +W+ D P+ YE SVLGF+EP+L TL+ + V Y + + +LI GW A++++ ++Y Y YFV+E K+ +L W+PSL+ D+R+ +I +RS SV+ W + + + E ISA+L+IP++STLAFGGIGGLA GLA KDV+SNFFGG+MLL EPF PGDMV+F G EG+VERVG+YQTRLRGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D + E++ IK AL+ +P +D+LSPFRVH F L + CYFATKS DE+LYLQQ+AL+E+TRVV ++D+ + +G+ + G+++ + VA SG N +GA + D P PIN GG+SV
Sbjct: 28 LTNVVTPQKLFLFLLFQIVYRRLLRLLYRLQVQVWRLVRKHD-PQPYEQSVLGFVEPRLRTLSRTLVVAYALKSGVRVLIASGWNANPQLAKVLSDVVYCWYAGYFVDEAKRFFLPVWIPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEILQGIKTALKDVPNIDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLEVTRVVQGASATMT-SVLYVDMNNPAPIGKVPLAGMINSAQN-KGVAQSGLPKVVAAPKDLNPKGAEGASIEED-------GPRPINGTGVSGGSSV 445
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|337293658|emb|CCB91646.1| (MscS family inner membrane protein ynaI [Waddlia chondrophila 2032/99]) HSP 1 Score: 159.073 bits (401), Expect = 2.306e-39 Identity = 83/268 (30.97%), Postives = 147/268 (54.85%), Query Frame = 0
Query: 299 AYFVNEVKKEYL---TTWVPSLQEDRRRSYIIDRSSS---------VVLWILAIFSCI------ECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 548
A F+ ++++ + T W+ + R + +++R SS ++L I +F+ + ++ L++ LAFGGIGG+A G A KD+V+NFFGG+M+ F G+ + + H+EG VE +G+Y TR+R RPTY+PN+VF+D ++ N R+ +RR + + +R+ D + + ++ EI+K L P +D VHF FG+ L++ C+ T + ++ +QQ L++I ++ G A+PTT + L
Sbjct: 86 ASFIAKIRQLFFLLFTAWIALRWKSRFQKKLVNRVSSRKSAAQDQALILAIGKVFTVFILFVVGMIVLDIFEVQLTALLAFGGIGGVAIGFAGKDIVANFFGGLMIHINRHFAIGEWI--LSPNKHFEGVVEEIGWYMTRIRTFARRPTYIPNAVFIDAIIENPGRMYNRRIKETVGVRYADVKKVDSIVKEIRKMLETHPAIDRSKFLFVHFMNFGASSLNIEVYCFTKTTNWGQWRDIQQDVLLKIADIIKSQGAEIAFPTTTVHL 351
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|837856817|ref|WP_047877706.1| (mechanosensitive ion channel family protein [Photobacterium aquae] >gi|836451223|gb|KLV07365.1| mechanosensitive ion channel protein MscS [Photobacterium aquae]) HSP 1 Score: 156.377 bits (394), Expect = 2.234e-38 Identity = 79/198 (39.90%), Postives = 113/198 (57.07%), Query Frame = 0
Query: 351 LKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 548
L + LS L FGG+GGL G+A+KD+++NFFG M+ F PF GD + R EG VE++GF T +R D RP YVPNSVF +V N R+ +RR + + SLR+QD + + V+ +IK L + P +D V F +G L + + T + EY +QQ +++I +V E G FA+PT LDL
Sbjct: 155 LGLSLSGVLTFGGVGGLIVGMAAKDLLANFFGAAMIYFDRPFKLGDWIRSPDR--QIEGTVEKIGFRVTMIRTFDKRPLYVPNSVFSSIVVENASRMLNRRIKQTVSLRYQDADKVAAVVKDIKAMLSLHPDIDTTQTLIVSFDNYGPSSLDILVYTFTKTVAWVEYKEVQQDVMLKIVEIVKEHGADFAFPTMTLDL 350
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|1056916585|ref|WP_068330598.1| (mechanosensitive ion channel family protein [Photobacterium jeanii] >gi|1032041359|gb|OAN16930.1| mechanosensitive ion channel protein MscS [Photobacterium jeanii]) HSP 1 Score: 155.221 bits (391), Expect = 6.563e-38 Identity = 80/198 (40.40%), Postives = 115/198 (58.08%), Query Frame = 0
Query: 351 LKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 548
L + LS L FGG+GGL G+A+KD+++NFFGG+M+ F PF GD + R EG VER+GF T +R D RP YVPNSVF +V N R+T+RR + + SLR+QD + +V+ IK L+ P +D V F +G L + + T + EY +QQ +++I VV + G FA+PT+ + L
Sbjct: 155 LGLSLSGILTFGGVGGLIVGMAAKDLLANFFGGMMIYFDRPFKVGDWIRSPDR--QIEGTVERIGFRMTVIRTFDKRPLYVPNSVFSSIVVENPSRMTNRRIKQTVSLRYQDAAVVNQVVAGIKTMLQHHPDIDTRQTLIVSFDHYGPSSLDIMVYTFTKTVNWVEYKEVQQDVMLKIVEVVHQHGADFAFPTSTVHL 350
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|1189382683|gb|OSX70113.1| (hypothetical protein BU14_0897s0002 [Porphyra umbilicalis]) HSP 1 Score: 152.91 bits (385), Expect = 1.060e-37 Identity = 84/260 (32.31%), Postives = 136/260 (52.31%), Query Frame = 0
Query: 294 YIAYGAYFVNEVKKEYLTTWVPS--LQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGT---HYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 548
+ AY + ++ VK + V + + ++++R V + + + + ++ + IPL S L GG GG+A GLAS++ N GG++L T PF PG+ + G+ EG V+RVG + + G D PT VPNSVF VTN+ R+ HRRF + LR+ D + +P V+ I+ L P VD VH+ ++ + L + A+ +FA L E+L Q L+ I+ +V G FA+PTT +++
Sbjct: 35 HAAYAGWLLSRVKAAVVDRSVDGHGVFGSAKARFLLNRVGDVAILAVVVGAVLDAVG----IPLQSALTLGGFGGIALGLASREAAENLVGGLLLGVTAPFAPGEAIIARKGGSGPPAVEGIVQRVGLINSSVVGFDAVPTTVPNSVFSAAAVTNLSRLKHRRFRQTIGLRYVDVDRVPGVVQGIRSLLAAAPGVDPAKGITVHWVRYAASSLDIEATAFFALGRL-EFLDTVQGLLLRISELVRAAGADFAFPTTTIEV 289
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|502947973|ref|WP_013182949.1| (mechanosensitive ion channel family protein [Waddlia chondrophila] >gi|297377426|gb|ADI39256.1| putative mscS family protein [Waddlia chondrophila WSU 86-1044]) HSP 1 Score: 154.451 bits (389), Expect = 1.093e-37 Identity = 81/268 (30.22%), Postives = 142/268 (52.99%), Query Frame = 0
Query: 299 AYFVNEVKKEYL---TTWVPSLQEDRRRSYIIDRSSS---------------VVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 548
A F+ ++++ + T W+ + R + +++R SS V + +F + ++ L++ LAFGGIGG+A G A KD+V+NFFGG+M+ F G+ + + H+EG VE +G+Y TR+R RPTY+PN+VF+D ++ N R+ +RR + + +R+ D + + ++ EI+K L +D VHF FG+ L++ C+ T + ++ +QQ L++I ++ G A PTT + L
Sbjct: 86 ASFIAKIRQLFFLLFTAWIALRWKSRFQKKLVNRVSSRKSAAQDQALIQAIGKVFTVFILFVVGMIVLDIFEVQLTALLAFGGIGGVAIGFAGKDIVANFFGGLMIHINRHFAIGEWI--LSPNKHFEGVVEEIGWYMTRIRTFARRPTYIPNAVFIDAIIENPGRMYNRRIKETVGVRYADVKKVDSIVKEIRKMLETHSAIDRSKFLFVHFMNFGASSLNIEVYCFTKTTNWGQWRDIQQDVLLKIADIIESQGAEIALPTTTVHL 351
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|1178692301|ref|WP_083200831.1| (mechanosensitive ion channel family protein [Marinomonas spartinae] >gi|1041806455|emb|SBS28013.1| Low conductance mechanosensitive channel YnaI [Marinomonas spartinae] >gi|1043928733|emb|SBS28668.1| Low conductance mechanosensitive channel YnaI [Marinomonas spartinae]) HSP 1 Score: 153.68 bits (387), Expect = 3.273e-37 Identity = 87/256 (33.98%), Postives = 132/256 (51.56%), Query Frame = 0
Query: 295 IAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVS 550
IA +FV + KE T S + + Y + S +L I + + I L +S LAFGG+GG+A G A+KD+++NFFGG+++ PF GD + + + EG VE +G+ QTR+R D RP YVPN+ F V N R++HRR + +R+ DF LP++I IK+ + +D F V+FTQFG L + T Y ++Q L + ++ E G A+PTT + + S
Sbjct: 104 IAIITWFVLRIIKEAENTLTTSSKVKNKVDYTTASAISKLLRASVIITALLVILQSLGYSISGVLAFGGVGGIAVGFAAKDLLANFFGGLVVYLDRPFAVGDWIR--SPDKNIEGTVENIGWRQTRIRTFDKRPLYVPNATFSTISVENPSRMSHRRINETIGVRYDDFSKLPQIIASIKEMVSQHQDLDTNETFMVNFTQFGPSSLDFFIYTFTKTVDWKTYHDVKQDVLFKTMEIIEEYGAEVAFPTTTMHMAS 357
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|684145178|dbj|GAL05654.1| (small-conductance mechanosensitive channel [Photobacterium aphoticum]) HSP 1 Score: 147.902 bits (372), Expect = 3.816e-37 Identity = 77/194 (39.69%), Postives = 111/194 (57.22%), Query Frame = 0
Query: 359 LAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVSKE 552
L FGG+GGL G+A+KD+++NFFG VM+ F PF GD + R + EG VE++GF T +R D RP YVPNSVF +V N R+T+RR + + LR+QD E + V+ +IK L + +D V F +G L++ + T EY +QQ +++I +V E G FA+PTT L + E
Sbjct: 2 LTFGGVGGLIVGMAAKDLLANFFGAVMIYFDRPFQLGDWIRSPDR--NIEGTVEQIGFRVTMIRTFDKRPLYVPNSVFSSIVVENASRMTNRRIKQTVGLRYQDAEKVEGVVKDIKAMLTLHDDIDTTQTMIVSFDNYGPSSLNILVYTFTKTVGWVEYKEVQQDVMLKIVEIVKEHGADFAFPTTTLQFDTPE 193
BLAST of EWM30349.1 vs. NCBI_GenBank
Match: gi|544216635|ref|XP_005538462.1| (similar to small conductance mechanosensitive ion channel [Cyanidioschyzon merolae strain 10D] >gi|449019024|dbj|BAM82426.1| similar to small conductance mechanosensitive ion channel [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 154.451 bits (389), Expect = 7.127e-37 Identity = 86/263 (32.70%), Postives = 140/263 (53.23%), Query Frame = 0
Query: 288 LMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRS--YIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVL-SPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLD 547
+++ L I Y A+ ++ W +ED S +++ R +V+++ +A +E +PL S LAFGGIGGLA GLA++++ NF G+ML PF PG+ V T G G+V ++GFY+T L G D RP ++PN+ ++ +TN RIT+RR F LR+QD + + ++ +++ L +P++ V FT+F Y L + SC +L +QQ L+E+ R+V FA PT ++
Sbjct: 205 VISRLATIGYFAFVLDT-----FYNWFLYEREDLSLSQIFVLGRLGTVLIYAVAFLVFVETTG----LPLRSILAFGGIGGLAVGLATQELAKNFISGIMLALGAPFAPGESVQLNTLGV--SGQVRQIGFYKTELIGADGRPIWIPNAQLLNERLTNNSRITNRRINLRFGLRYQDIDKIGRIVERVREMLAEVPEIAAYRESISVFFTEFAEYSLPIQLSCIVNVTDGRRFLEIQQQVLIELNRIVKSELADFALPTRAIE 456 The following BLAST results are available for this feature:
BLAST of EWM30349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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