rna3630, rna3630 (mRNA) Nannochloropsis gaditana

Overview
Namerna3630
Unique Namerna3630
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1406
Alignment locationCM002461.1:844678..846645 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100056g28.10478.mrna
Orig protein idgnl|cribi|Naga_100056g28.10478
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:844678..846645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100056g28gene3497Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3630rna3630-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27065.1cds3621Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3630 ID=rna3630|Name=rna3630|organism=Nannochloropsis gaditana|type=mRNA|length=1406bp
TAAGTTTCCCTCGGCAGATTCGATATAACGCCACCGCACGCAGCACCCCA
CTGGTCGGAAGAATTGCAGCCCCTCAGCAGTCTACAGCCGGCAACTGGAG
GAGGGGTCATCTGGAATGACTCCAAGCTGGCAAGGAAGGAAATTTTACCT
GCACTTCAGGTGGTGCTGCTGTGTTGCATGTACATGGCCGTCGGCCCTAC
CCTCATTCTTCTCAACAAGCACATCCTGAAAGACCTTGACGGGCATGGCT
TTAACTATCCTATGTTTTTATCATCTTTGGGCCTATTATCTTCTTCTCTG
GTGGCCCATTTCGCCGTTCGTGTTGGCGGTTTCGAGCTGCCCAACCAAGC
CCGCATGACACGTCAAACATACCTGACAACCATCGTGCCCGTGGGTATAT
GCCAAGCAGCCACTTTGGCCTTGGGCAATGCTGTTTATATGTTCTTGACT
GTCTCATTCATCCAAATGCTGAAGGCCTTCACCCCCGTCATGGTGCTGGT
GGTAGGGATTCTCTTTCAAGTCGAAGCCCCTGAAGCGGCGATTTGTATGG
CCGTCATGGGTATTTGCCTGGGCACAAGCGTAGCCTCTTATGGCGAGGTG
AACATGAATCTAACCGGGATGCTACTCATGTTTTCCGCCGAATTTACGGA
GGCCATTCGCCTTGTCCTAGTGCAGCGATTTCTGAAATCCCTTCGTTTTG
GAGTCGTCGAATCTCTGTACTTCATGTCACCAGCGGGAGCGGTCTGTCTC
TTGTGCGCGAGTATAATGAGCGAGTTCCCATCCATGCATCGTAATGGAGC
TTTCGCACAAGTTGCCTCCCATCCTCTCTTGTTTGCAACGGCGGGAACGT
TGGGCGTGGGGGTGCATTTCCTGAGTTTTATGGTCGTCCAACGCACAAAC
TCCGTGACACTCAAGGTCCTGGGAACGGCTCGGAACGCAATGTTGGTGTT
ATTGTCTGTTTTTTGGTACGGAGAACTAGTGAGTTCGACCCAATTCCTGG
GCTACGCTACGAGCATAGCGTTCTTTGGCTTTTACACATACTGTAGGACA
AGGAGTAAGGCATAGAGATTTTGGAGCGCTGACAGCAGGGTTATTTATGC
GGGGCGTAATGGAGGGGGGCGATGGGAAAATTGGGGACCTTGAAGGTTTT
TCCACGTGTCACATACTGAGTATATGTCTCCATGTCTAAATATGAACAAA
AGGAACTTATTCCTTTCATTAATTATAAAAGTCATGTGGAAGGACGAATT
TCGTCTTCTCGCTTAGTATGATCCCACAAACATTCTTGGTGTTTTATAAT
AGATAACGATCAGAGCTACAAGATTGCCAATGAGCTATCCTCATAACTGC
TCTTTTTTTATTGTGGATCATAACTTACAGATTTTCTCCTCGATATGTCA
CAAATC
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protein sequence of rna3630

>rna3630-protein ID=rna3630-protein|Name=rna3630|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAH
DLLDDLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDR
GTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASL
PAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLR
KITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEEPEIL
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mRNA from alignment at CM002461.1:844678..846645+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3630 ID=rna3630|Name=rna3630|organism=Nannochloropsis gaditana|type=mRNA|length=1968bp|location=Sequence derived from alignment at CM002461.1:844678..846645+ (Nannochloropsis gaditana)
GAGTTCATTCCAAGCCAACCAACCACCGCCCTTCCACGTACGTTTCCACA
CGCTTAGAAACTTCCATCCATGCCTCGTTATTTGATGCaattccttcctt
tttcacaGAGATGCGAAACACATTCTTACTTTTACTTGGGGGCTTGGTCG
GCGTTTCGTCGTATTTCCTacccttctctttcaatcAGGTGAGTGCAAAG
CGCAACTTGAAGCTGTTCGTTTTGAGGGGGTATACTCTGCAATGAGCTGC
TTGTGTCTTGCATTATTTTTTTAAGTCAATCAAATGATGTAATGCGTACC
ATCCTCAACGTTAAAGTGGTACATGACATGCGTTTGTATGTCATTTATGT
AGCTGTTATGTAAAAGGGTTCATGTGAGAGAGGCAAGGATTTGCGGGGAA
GAATGGAGGCTGTACGGACCCGTGACGGCGCAACAACCGGTCTcccagga
ggggaagcataCTGAAGGAGTCATGTCGATTCCAGTTTGTATTTCACTTG
CTTTCGCTCACCGGTTTTTAAACATTCGCACCCGCTGCACGCCGCGGTAT
TATCCCACTCGGTGTAGAGTTGAGAGCGTTTTCAATctcaccgcctccgc
ctccattcctcgtcccttccgACAGTATGCAACAGCTCGCGCAAATGAGA
TTGCGACACGTAAGGCACAGCAACAAAGCATCGCCACGAAGGCGCACGAT
TTGTTGGACGATTTGCCCGAGTTGACTGATTCCAGGCTGGCCGGTTGGCG
GCTCAAGAAAGGGGCGCACGGAAGTGGCGAGACAGGCGTAGAGGGAGACA
GCGCGTCTGCCGCAAGCATGGAGGATACACAAGCAATCGTGGATCGAGGC
ACAGAATCTTTTTCCCCGCAACAGTATGACGTCGTTGAGTaccctttgcc
ctctcacGCGCATGGCATCTTGGACGGCGATGACCGTGTGCGAGGGGTAG
GGGTGCTTTTGAGCAATAACAGAGACAGATTAGACGCCGCAAGCCTCCCA
GCAGAGAAGATCGATTTGTGTCAGGTTGAGCCACTGACCTTGGACCCAGA
GGGGCAATGGGGCAGCGGGctagaggggggggagcagcaGGTATGGCGGA
AGGACGAGCTCGAACCGCGCGTGTTCGTCGCCTATGCGGACTTGAGGAAA
ATCACATCGAAGCAAAATGGTATGGCGGATAAGTGGCGGCGTTGGATTTT
GGAGGAGCCCTTATCGGAGGGGTGTGGGCCTCCCccaggcgcggaggagg
agccagaAATTCTgtaaagggaaaaaaggggatcAAAGAGGTTAAGAGCC
TGTTATCGGTTGATTTGAAAGGCGGATGGCATCATTTTTATTGTGTACGA
TGTCCAtgtgcggggaggaggtggagcctTGCCGGGTGGGGCTTGTAGAT
ATGTTAGAGCGCAGGGGTGGAAATGGAAAAATGTTACGCCTGATCACGAT
TTTGGGCCCATCGAGTGCTCTTTATTGACGAATGCAAAATTGAGGAGGCA
GAAAGCTGTTGCGGATGAGAGGGCCTGGCGTGAACACGGGTGAATGCCCT
TTGCACACAAATTATTTCTTCGTGATCGGCTAGGCGACTATGGAATAAAA
ATGCGGTAGCACTTTCATGTTGCGAAGTCAGTGCACCAGTGAAATAAGAC
AACGCCAAGCCAAGACGCCACGAATGCATGTAATGCCTGAACCACATGTC
GGAACTACTAGGTGCCATGTCTCTCCGAAAGCGATATGTTAATGTTGTTG
AGGATACTGCGATACAGACCACATGAAAGCAGAGGCGGATAAGACGGTGT
ACAAGATAAAAATGACAAAAGAAGGAGCACTGGATAGGCAAGGAATGTCT
TGTCGGCGAGTAACATGTCCAGTGCTGATGTTTAGATGCAAAGGATGCAT
GTGCGAGCATCATGGGGTCTAAGGAGCCCGAAGAAAGCAAAACGGGGCAT
AAATTTGGTAGCGGCATG
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Coding sequence (CDS) from alignment at CM002461.1:844678..846645+

>rna3630 ID=rna3630|Name=rna3630|organism=Nannochloropsis gaditana|type=CDS|length=1440bp|location=Sequence derived from alignment at CM002461.1:844678..846645+ (Nannochloropsis gaditana)
ATGCGAAACACATTCTTACTTTTACTTGGGGGCTTGGTCGGCGTTTCGTC
GTATTTCCTacccttctctttcaatcAGTATGCAACAGCTCGCGCAAATG
AGATTGCGACACGTAAGGCACAGCAACAAAGCATCGCCACGAAGGCGCAC
GATTTGTTGGACGATTTGCCCGAGTTGACTGATTCCAGGCTGGCCGGTTG
GCGGCTCAAGAAAGGGGCGCACGGAAGTGGCGAGACAGGCGTAGAGGGAG
ACAGCGCGTCTGCCGCAAGCATGGAGGATACACAAGCAATCGTGGATCGA
GGCACAGAATCTTTTTCCCCGCAACAGTATGACGTCGTTGAGTacccttt
gccctctcacGCGCATGGCATCTTGGACGGCGATGACCGTGTGCGAGGGG
TAGGGGTGCTTTTGAGCAATAACAGAGACAGATTAGACGCCGCAAGCCTC
CCAGCAGAGAAGATCGATTTGTGTCAGGTTGAGCCACTGACCTTGGACCC
AGAGGGGCAATGGGGCAGCGGGctagaggggggggagcagcaGGTATGGC
GGAAGGACGAGCTCGAACCGCGCGTGTTCGTCGCCTATGCGGACTTGAGG
AAAATCACATCGAAGCAAAATGGTATGGCGGATAAGTGGCGGCGTTGGAT
TTTGGAGGAGCCCTTATCGGAGGGGTGTGGGCCTCCCccaggcgcggagg
aggagccagaAATTCTgtaaATGCGAAACACATTCTTACTTTTACTTGGG
GGCTTGGTCGGCGTTTCGTCGTATTTCCTacccttctctttcaatcAGTA
TGCAACAGCTCGCGCAAATGAGATTGCGACACGTAAGGCACAGCAACAAA
GCATCGCCACGAAGGCGCACGATTTGTTGGACGATTTGCCCGAGTTGACT
GATTCCAGGCTGGCCGGTTGGCGGCTCAAGAAAGGGGCGCACGGAAGTGG
CGAGACAGGCGTAGAGGGAGACAGCGCGTCTGCCGCAAGCATGGAGGATA
CACAAGCAATCGTGGATCGAGGCACAGAATCTTTTTCCCCGCAACAGTAT
GACGTCGTTGAGTaccctttgccctctcacGCGCATGGCATCTTGGACGG
CGATGACCGTGTGCGAGGGGTAGGGGTGCTTTTGAGCAATAACAGAGACA
GATTAGACGCCGCAAGCCTCCCAGCAGAGAAGATCGATTTGTGTCAGGTT
GAGCCACTGACCTTGGACCCAGAGGGGCAATGGGGCAGCGGGctagaggg
gggggagcagcaGGTATGGCGGAAGGACGAGCTCGAACCGCGCGTGTTCG
TCGCCTATGCGGACTTGAGGAAAATCACATCGAAGCAAAATGGTATGGCG
GATAAGTGGCGGCGTTGGATTTTGGAGGAGCCCTTATCGGAGGGGTGTGG
GCCTCCCccaggcgcggaggaggagccagaAATTCTgtaa
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Synonyms
Publications