EWM27065.1, cds3621 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM27065.1 vs. NCBI_GenBank
Match: gi|585109239|gb|EWM27065.1| (hypothetical protein Naga_100056g28 [Nannochloropsis gaditana]) HSP 1 Score: 488.804 bits (1257), Expect = 9.337e-175 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query: 1 MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEEPEIL 239
MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEEPEIL
Sbjct: 1 MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEEPEIL 239
BLAST of EWM27065.1 vs. NCBI_GenBank
Match: gi|299473156|emb|CBN78732.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 90.5077 bits (223), Expect = 2.276e-18 Identity = 63/194 (32.47%), Postives = 94/194 (48.45%), Query Frame = 0
Query: 35 IATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDRGT-ESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCG 227
++ R + + ++ D+P + DSRLAGWR+ G + + D+ A + G ES P DVVEYPL D R +GV V++S N+ R DA LP + +D +++ L D L+ E+ VW DELE F +++ + S NG DKW+RW + + LSEGCG
Sbjct: 47 VSARPHHARVLVNMMAEVDADVPGIADSRLAGWRV-------GSKQAATTATEDTAAVDSDADSEGGAGESGEPGCGDVVEYPLTDLVKN-ESTDGREKGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPD--------LDSEEEGVWMADELETCAFAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCG 224
BLAST of EWM27065.1 vs. NCBI_GenBank
Match: gi|168056529|ref|XP_001780272.1| (predicted protein [Physcomitrella patens] >gi|162668326|gb|EDQ54936.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 76.6406 bits (187), Expect = 4.663e-13 Identity = 56/165 (33.94%), Postives = 82/165 (49.70%), Query Frame = 0
Query: 70 KKGAHGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEE 234
+K G + S S + E+ +++ GTE+ Q DVVEYPL S A DDR++GVG+++S N DR D L E + L ++EPL +P VWR D +E F + DLR + ++ N + D+ WI+ + LS C P AEE
Sbjct: 115 RKTRKGDARSSAAARSGSTYTPENGESVC--GTEA---QNGDVVEYPL-SDAIKAQHQDDRLKGVGLVVSRNIDRGDRDKLSVENLTLVEIEPLYREPNS-----------SVWRADPMEGAAFASLPDLRILRTEFNRVTDE---WIVLDDLSLDCDSPTYAEE 259
BLAST of EWM27065.1 vs. NCBI_GenBank
Match: gi|545367183|ref|XP_005648443.1| (DnaJ-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384250420|gb|EIE23899.1| DnaJ-domain-containing protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 70.4774 bits (171), Expect = 1.440e-10 Identity = 48/129 (37.21%), Postives = 66/129 (51.16%), Query Frame = 0
Query: 107 PQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKI-TSKQNGMADKWRRWILEEPLSEGCGPPPGAEE 234
PQ DVVEYPL L D R GVG+++ N DR DA LP +++DLC++EPL + G + W D+L F +LRK+ +G ++ W++ PLSEGCG P EE
Sbjct: 268 PQFGDVVEYPLREIEMRELQ-DGRTAGVGLVVGRNMDRGDAKKLPPDQLDLCEIEPLRQEETG----------SERWFPDDLGIPSFARLGELRKLPVLDYDG---RYDIWVINAPLSEGCGGPELPEE 382 The following BLAST results are available for this feature:
BLAST of EWM27065.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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