EWM27065.1, cds3621 (CDS) Nannochloropsis gaditana

Overview
NameEWM27065.1
Unique Namecds3621
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:844788..844865 +
Alignment locationCM002461.1:845303..845944 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27065.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100056g28.10478.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:844788..844865 +
CM002461.1supercontigCM002461.1:845303..845944 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27065.1 vs. NCBI_GenBank
Match: gi|585109239|gb|EWM27065.1| (hypothetical protein Naga_100056g28 [Nannochloropsis gaditana])

HSP 1 Score: 488.804 bits (1257), Expect = 9.337e-175
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEEPEIL 239
            MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEEPEIL
Sbjct:    1 MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEEPEIL 239          
BLAST of EWM27065.1 vs. NCBI_GenBank
Match: gi|299473156|emb|CBN78732.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.5077 bits (223), Expect = 2.276e-18
Identity = 63/194 (32.47%), Postives = 94/194 (48.45%), Query Frame = 0
Query:   35 IATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGAHGSGETGVEGDSASAASMEDTQAIVDRGT-ESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCG 227
            ++ R    + +     ++  D+P + DSRLAGWR+       G       +    +  D+ A  + G  ES  P   DVVEYPL          D R +GV V++S N+ R DA  LP + +D  +++ L  D        L+  E+ VW  DELE   F    +++ + S  NG  DKW+RW + + LSEGCG
Sbjct:   47 VSARPHHARVLVNMMAEVDADVPGIADSRLAGWRV-------GSKQAATTATEDTAAVDSDADSEGGAGESGEPGCGDVVEYPLTDLVKN-ESTDGREKGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPD--------LDSEEEGVWMADELETCAFAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCG 224          
BLAST of EWM27065.1 vs. NCBI_GenBank
Match: gi|168056529|ref|XP_001780272.1| (predicted protein [Physcomitrella patens] >gi|162668326|gb|EDQ54936.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 76.6406 bits (187), Expect = 4.663e-13
Identity = 56/165 (33.94%), Postives = 82/165 (49.70%), Query Frame = 0
Query:   70 KKGAHGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEE 234
            +K   G   +     S S  + E+ +++   GTE+   Q  DVVEYPL S A      DDR++GVG+++S N DR D   L  E + L ++EPL  +P              VWR D +E   F +  DLR + ++ N + D+   WI+ + LS  C  P  AEE
Sbjct:  115 RKTRKGDARSSAAARSGSTYTPENGESVC--GTEA---QNGDVVEYPL-SDAIKAQHQDDRLKGVGLVVSRNIDRGDRDKLSVENLTLVEIEPLYREPNS-----------SVWRADPMEGAAFASLPDLRILRTEFNRVTDE---WIVLDDLSLDCDSPTYAEE 259          
BLAST of EWM27065.1 vs. NCBI_GenBank
Match: gi|545367183|ref|XP_005648443.1| (DnaJ-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384250420|gb|EIE23899.1| DnaJ-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 70.4774 bits (171), Expect = 1.440e-10
Identity = 48/129 (37.21%), Postives = 66/129 (51.16%), Query Frame = 0
Query:  107 PQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKI-TSKQNGMADKWRRWILEEPLSEGCGPPPGAEE 234
            PQ  DVVEYPL       L  D R  GVG+++  N DR DA  LP +++DLC++EPL  +  G           + W  D+L    F    +LRK+     +G   ++  W++  PLSEGCG P   EE
Sbjct:  268 PQFGDVVEYPLREIEMRELQ-DGRTAGVGLVVGRNMDRGDAKKLPPDQLDLCEIEPLRQEETG----------SERWFPDDLGIPSFARLGELRKLPVLDYDG---RYDIWVINAPLSEGCGGPELPEE 382          
The following BLAST results are available for this feature:
BLAST of EWM27065.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109239|gb|EWM27065.1|9.337e-175100.00hypothetical protein Naga_100056g28 [Nannochlorops... [more]
gi|299473156|emb|CBN78732.1|2.276e-1832.47conserved unknown protein [Ectocarpus siliculosus][more]
gi|168056529|ref|XP_001780272.1|4.663e-1333.94predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|545367183|ref|XP_005648443.1|1.440e-1037.21DnaJ-domain-containing protein [Coccomyxa subellip... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3630rna3630Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications