rna3629, rna3629 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3629
Unique Name	rna3629
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1976
Alignment location	CM002461.1:842552..844415 +

Link to JBrowse

Properties


Property Name	Value
Product	drug metabolite transporter superfamily
Orig transcript id	gnl\|cribi\|Naga_100056g29.10451.mrna
Orig protein id	gnl\|cribi\|Naga_100056g29.10451
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:842552..844415 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100056g29	gene3496	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3629	rna3629-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27038.1	cds3620	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:842552..844415+
coding sequence from alignment at CM002461.1:842552..844415+

mRNA sequence

>rna3629 ID=rna3629|Name=rna3629|organism=Nannochloropsis gaditana|type=mRNA|length=1976bp
TAAAGAGGGGAAAAGGCGATTATGGCAAACATGCCAAGGGCAATATATAT
GAAAAGGCAGTCCCAAAAAAGCTTCAACGGTGACCCAGGCAATGGATGTC
GTGTGTCACGTCTCATTCGGTAAGGCTTGCTGAGTGTCCGCAACTCAGCA
AGCCTTGTTGTCATTCTGGCGGCGAGAGCTACTTCACCAAAAAAAAGCTG
CCGCTCAACCAATAGCCCGAACAAAGCTTGCCTAATTCGTGCACACATAA
TGTCATAGATTATGATGATACTCTGGACGCTCCCCGTTTATACTTTGGTG
GCAGTCATAGCAATAAGCGCCGAGGCCAGTCCCGTCGACATCTTAGGAAT
TCCACGGTCCGCTGATCCTCTTTATGCCGCTGCCAAGGCTAAGGGGAAAT
TCACCTGCCAAAGCGATAAAAAGATCGTCATTCCGTTTGTACAGGTGAAC
GACAACTATTGTGATTGTCCAGATGGAAGTGATGAGCCTGGCACAAGCGC
TTGCGCTCCTCAAGGTCGTTTTTACTGTGTGAACGAGGGGCACGTGGGTG
CCTCAATCCCTTCCTCGAAAGTGAACGACGGGATCTGTGAGCTCGCTTGC
TGCGACGGCAGCGACGAAGCGCCAGGGTTATGTCCGAATACGTGCAGGGA
AATCGCGGCCCAAAAGGCCAAAGAGCGAGCGGCTTGGAGACAAGTGGTGG
AGGAGGGGATGGCGAAGAAGAAGCAATACATGCGAGACGCGTCGGCTATG
ATGGAGGCCCGGTACAAGGAGCTCGCCTCCTTGCAAGCGCAGAAGGTAGG
GTTGGAGAAAAAAGTTGCAGATGCCCGCATTGAAAAGGAATCGGAGGAGG
GGAAGGAAAACGTTAAACGTGACGAGGCTATGGAGCAGGCGGCGACGACT
TTGATATCTGGTTTAAAGATAGAGAGCTTGGGCCAGGAAGAGTTGGTGTC
CCTGCACAGAAAGCTGAAGGGTCGCCCGGGTAAGGCGTTGAGGAGAGTCT
TAGAAGAGATCCGGGGCAAGGCGGGGATCGAGGAGGTGGAGGGAGAGGAG
GAGGGAGAGGGAGGCGAGCAGCGGCCCTTGTCGGACATAGCGGCCAAGGA
GGAGATGGAGAAGAAAATGAAAGAGGTCAAAGAGGGCACGTTCCACGATC
AGCTGGGTCCGGTGCCGGCGGAGGACGAGGACGAGGACGCGGAGGGGGAC
GAGGACGATGACGAAGAGATTGAAGACGATGACTATTCCCCTCCGGACGC
CGCACAGGAGCCATTGGACCCTGCTTTAGTGTCCCTCCTGGAGGCAGCAG
AGGAGGGCCTTGATGAGCCCTCGGCCGGTGCGGAGGCAGCTCGACAGGCG
CTGAAGGATGCGCGAGATGAAGAGAGAACAGTGCGCGAACGCATCCAGGA
GATGGAGGCGGAGAGCCAGGACGACTACGGTGACGGTTACGCGTTTTACT
TGCTCCGGGGGAAGTGCTTTAGCAAGACGGTGAACAAGTATCGGTACGAA
ATGTGTCCCTACAAAGAGGCGCAGCAAGTGGAGGGCAGTGCGGCCCGTGG
CACCTCTCTGGGGAAGTGGGGAGGTATGGAGCAAAGCAACGGTACAGTCG
CCGGAGGCTCATCTTTCAAATTTCTCTTTCGCAAGGGACAGCAATGTTGG
AACGGTCCCGAGAGATCACTGACGGTCACGGTGGAATGCGGTGTGGAGGA
CCAGGTAGTGAGCGTGGAAGAGCCGTCTATGTGTGAGTACGCGATGACCT
TCAAGACTCCGGCGGCGTGCTCGCCCGCGCTCCTCGAGTGGGACGACCAG
GAGGCAGCGGGCAGGGAGGCCTTTCATTCCGAACTTTAACCAAGACAAAT
GGAGAAAAAGGGACACAGGGCGAGCGGGGACTTGTATTAGAAGGCGGGGG
CCACATAGAACGAAAGATTAAGAAAAAGCCAAGGTAGTCAAGACCAAGTC
AAACGGGCCTCTTCGGCCAATACTCA

protein sequence of rna3629

>rna3629-protein ID=rna3629-protein|Name=rna3629|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MYMAVGPTLILLNKHILKDLDGHGFNYPMFLSSLGLLSSSLVAHFAVRVG
GFELPNQARMTRQTYLTTIVPVGICQAATLALGNAVYMFLTVSFIQMLKA
FTPVMVLVVGILFQVEAPEAAICMAVMGICLGTSVASYGEVNMNLTGMLL
MFSAEFTEAIRLVLVQRFLKSLRFGVVESLYFMSPAGAVCLLCASIMSEF
PSMHRNGAFAQVASHPLLFATAGTLGVGVHFLSFMVVQRTNSVTLKVLGT
ARNAMLVLLSVFWYGELVSSTQFLGYATSIAFFGFYTYCRTRSKA

mRNA from alignment at CM002461.1:842552..844415+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3629 ID=rna3629|Name=rna3629|organism=Nannochloropsis gaditana|type=mRNA|length=1864bp|location=Sequence derived from alignment at CM002461.1:842552..844415+ (Nannochloropsis gaditana)
TAAGTTTCCCTCGGCAGATTCGATATAACGCCACCGCACGCAGCACCCCA
CTGGTAAGAGAGACTGTGATATTCATGAAGTCACATAGATCAAAAAAGAA
TGCAGATATTGTGGGTCAGTCTGACAAGATAATGGCCCTCAAAATTATGG
AGAGTGAGGGTAGCGGAAAAGCTGAAGAGCTCGACCCTTCAACAAAAAGG
TCGGAAGAATTGCAGCCCCTCAGCAGTCTACAGCCGGCAactggaggagg
ggtcaTCTGGAATGACTCCAAGctggcaaggaaggaaatttTACCTGCAC
TTCAGGTGGTGCTGCTGTGTTGCATGTACATGGCCGTCGGTAAGTGTTCC
TCTTCAACATTACTCTGCATGAATCGCGTAATACCATGCGGCACGCGTCA
CGAGACCTGAATATGCAGTCCTTGTCTTCGCATATTCATAAATTTTTGGG
AAACTTCTCGTAGATGCCTCATATTTTGATTCATCAACAAAACATCCCaa
cctcgtccacgtctcCGCAGGCCCTACCCTCATTCTTCTCAACAAGCACA
TCCTGAAAGACCTTGACGGGCATGGCTTTAACTATCCTATGTTTTTATCA
TCTTTGGGCCTATTATCTTCTTCTCTGGTGGCCCATTTCGCCGTTCGTGT
TGGCGGTTTCGAGCTGCCCAACCAAGCCCGCATGACACGTCAAACATACC
TGACAACCATCGTGCCCGTGGGTATATGCCAAGCAGCCACTTTGGCCTTG
GGCAATGCTGTTTATATGTTCTTGACTGTCTCATTCATCCAAATGCTGAA
GGCCTTCACCCCCGTCATGGTGCTGGTGGTAGGGATTCTCTTTCAAGTCG
AAGCCCCTGAAGCGGCGGTAAGTGAAaccaggaaaaaaggaaaaggcatC
GAACCGTTACGTCGTAGGGAGCCCTGTGTGCTTGAcgtatttttcctttt
tttcctatTGAAAGTAAGTAAAAAAAAAGGTTCTCACATTTTGAACAGAT
TTGTATGGCCGTCATGGGTATTTGCCTGGGCACAAGCGTAGCCTCTTATG
GCGAGGTGAACATGAATCTAACCGGGATGCTACTCATGTTTTCCGCCGAA
TTTACGGAGGCCATTCGCCTTGTCCTAGTGCAGCGATTTCTGAAATCCCT
TCGTTTTGGAGTCGTCGAATCTCTGTACTTCATGTCACCAGCGGGAGCGG
TCTGTCTCTTGTGCGCGAGTATAATGAGCGAGTTCCCATCCATGCATCGT
AATGGAGCTTTCGCACAAGTtgcctcccatcctctcttGTTTGCAACGGC
GGGAACGTTGGGCGTGGGGGTGCATTTCCTGAGTTTTATGGTCGTCCAAC
GCACAAACTCCGTGACACTCAAGGTCCTGGGAACGGCTCGGAACGCAATG
TTGGTGTTATTGTCTGTTTTTTGGTACGGAGAACTAGTGAGTTCGACCCA
ATTCCTGGGCTACGCTACGAGCATAGCGTTCTTTGGCTTTTACACATACT
GTAGGACAAGGAGTAAGGCATAGAGATTTTGGAGCGCTGACAGCAGGGTT
ATTTATGCGGGGCGTAATGGAGGGGGGCGATGGGAAAATTGGGGACCTTG
AAGGTTTTTCCACGTGTCACATACTGAGTATATGTCTCCATGTCTAAATA
TGAACAAAAGGAACTTATTCCTTTCATTAATTATAAAAGTCATGTGGAAG
GACGAATTTCGTCTTCTCGCTTAGTATGATCCCACAAACATTCTTGGTGT
TTTATAATAGATAACGATCAGAGCTACAAGATTGCCAATGAGCTATCCTC
ATAACTGCTCTTTTTTTATTGTGGATCATAACTTACAGATTTTCTCCTCG
ATATGTCACAAATC

Coding sequence (CDS) from alignment at CM002461.1:842552..844415+

>rna3629 ID=rna3629|Name=rna3629|organism=Nannochloropsis gaditana|type=CDS|length=2664bp|location=Sequence derived from alignment at CM002461.1:842552..844415+ (Nannochloropsis gaditana)
ATGTACATGGCCGTCGGCCCTACCCTCATTCTTCTCAACAAGCACATCCT
GAAAGACCTTGACGGGCATGGCTTTAACTATCCTATGTTTTTATCATCTT
TGGGCCTATTATCTTCTTCTCTGGTGGCCCATTTCGCCGTTCGTGTTGGC
GGTTTCGAGCTGCCCAACCAAGCCCGCATGACACGTCAAACATACCTGAC
AACCATCGTGCCCGTGGGTATATGCCAAGCAGCCACTTTGGCCTTGGGCA
ATGCTGTTTATATGTTCTTGACTGTCTCATTCATCCAAATGCTGAAGGCC
TTCACCCCCGTCATGGTGCTGGTGGTAGGGATTCTCTTTCAAGTCGAAGC
CCCTGAAGCGGCGATTTGTATGGCCGTCATGGGTATTTGCCTGGGCACAA
GCGTAGCCTCTTATGGCGAGGTGAACATGAATCTAACCGGGATGCTACTC
ATGTTTTCCGCCGAATTTACGGAGGCCATTCGCCTTGTCCTAGTGCAGCG
ATTTCTGAAATCCCTTCGTTTTGGAGTCGTCGAATCTCTGTACTTCATGT
CACCAGCGGGAGCGGTCTGTCTCTTGTGCGCGAGTATAATGAGCGAGTTC
CCATCCATGCATCGTAATGGAGCTTTCGCACAAGTtgcctcccatcctct
cttGTTTGCAACGGCGGGAACGTTGGGCGTGGGGGTGCATTTCCTGAGTT
TTATGGTCGTCCAACGCACAAACTCCGTGACACTCAAGGTCCTGGGAACG
GCTCGGAACGCAATGTTGGTGTTATTGTCTGTTTTTTGGTACGGAGAACT
AGTGAGTTCGACCCAATTCCTGGGCTACGCTACGAGCATAGCGTTCTTTG
GCTTTTACACATACTGTAGGACAAGGAGTAAGGCATAGATGTACATGGCC
GTCGGCCCTACCCTCATTCTTCTCAACAAGCACATCCTGAAAGACCTTGA
CGGGCATGGCTTTAACTATCCTATGTTTTTATCATCTTTGGGCCTATTAT
CTTCTTCTCTGGTGGCCCATTTCGCCGTTCGTGTTGGCGGTTTCGAGCTG
CCCAACCAAGCCCGCATGACACGTCAAACATACCTGACAACCATCGTGCC
CGTGGGTATATGCCAAGCAGCCACTTTGGCCTTGGGCAATGCTGTTTATA
TGTTCTTGACTGTCTCATTCATCCAAATGCTGAAGGCCTTCACCCCCGTC
ATGGTGCTGGTGGTAGGGATTCTCTTTCAAGTCGAAGCCCCTGAAGCGGC
GATTTGTATGGCCGTCATGGGTATTTGCCTGGGCACAAGCGTAGCCTCTT
ATGGCGAGGTGAACATGAATCTAACCGGGATGCTACTCATGTTTTCCGCC
GAATTTACGGAGGCCATTCGCCTTGTCCTAGTGCAGCGATTTCTGAAATC
CCTTCGTTTTGGAGTCGTCGAATCTCTGTACTTCATGTCACCAGCGGGAG
CGGTCTGTCTCTTGTGCGCGAGTATAATGAGCGAGTTCCCATCCATGCAT
CGTAATGGAGCTTTCGCACAAGTtgcctcccatcctctcttGTTTGCAAC
GGCGGGAACGTTGGGCGTGGGGGTGCATTTCCTGAGTTTTATGGTCGTCC
AACGCACAAACTCCGTGACACTCAAGGTCCTGGGAACGGCTCGGAACGCA
ATGTTGGTGTTATTGTCTGTTTTTTGGTACGGAGAACTAGTGAGTTCGAC
CCAATTCCTGGGCTACGCTACGAGCATAGCGTTCTTTGGCTTTTACACAT
ACTGTAGGACAAGGAGTAAGGCATAGATGTACATGGCCGTCGGCCCTACC
CTCATTCTTCTCAACAAGCACATCCTGAAAGACCTTGACGGGCATGGCTT
TAACTATCCTATGTTTTTATCATCTTTGGGCCTATTATCTTCTTCTCTGG
TGGCCCATTTCGCCGTTCGTGTTGGCGGTTTCGAGCTGCCCAACCAAGCC
CGCATGACACGTCAAACATACCTGACAACCATCGTGCCCGTGGGTATATG
CCAAGCAGCCACTTTGGCCTTGGGCAATGCTGTTTATATGTTCTTGACTG
TCTCATTCATCCAAATGCTGAAGGCCTTCACCCCCGTCATGGTGCTGGTG
GTAGGGATTCTCTTTCAAGTCGAAGCCCCTGAAGCGGCGATTTGTATGGC
CGTCATGGGTATTTGCCTGGGCACAAGCGTAGCCTCTTATGGCGAGGTGA
ACATGAATCTAACCGGGATGCTACTCATGTTTTCCGCCGAATTTACGGAG
GCCATTCGCCTTGTCCTAGTGCAGCGATTTCTGAAATCCCTTCGTTTTGG
AGTCGTCGAATCTCTGTACTTCATGTCACCAGCGGGAGCGGTCTGTCTCT
TGTGCGCGAGTATAATGAGCGAGTTCCCATCCATGCATCGTAATGGAGCT
TTCGCACAAGTtgcctcccatcctctcttGTTTGCAACGGCGGGAACGTT
GGGCGTGGGGGTGCATTTCCTGAGTTTTATGGTCGTCCAACGCACAAACT
CCGTGACACTCAAGGTCCTGGGAACGGCTCGGAACGCAATGTTGGTGTTA
TTGTCTGTTTTTTGGTACGGAGAACTAGTGAGTTCGACCCAATTCCTGGG
CTACGCTACGAGCATAGCGTTCTTTGGCTTTTACACATACTGTAGGACAA
GGAGTAAGGCATAG

Synonyms

Publications