rna3626, rna3626 (mRNA) Nannochloropsis gaditana

Overview
Namerna3626
Unique Namerna3626
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2218
Alignment locationCM002461.1:837256..838678 -

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Properties
Property NameValue
Productexpressed unknown protein
Orig transcript idgnl|cribi|Naga_100056g32.10465.mrna
Orig protein idgnl|cribi|Naga_100056g32.10465
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:837256..838678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100056g32gene3493Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27052.1cds3617Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3626rna3626-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3626 ID=rna3626|Name=rna3626|organism=Nannochloropsis gaditana|type=mRNA|length=2218bp
TATCAAATAGCGATCTCGCCAGCGTCTGTCCTCTGACTCGTTCCTGATAG
AAGCGTGGACAATTAGGGCACTCGGTCGCCTGCAACGATACGGTGCAATA
ACAGATGAACAGATTGCCGCAACTTGATTTTTGCTCACACGCGAGACGGG
CCGATATTCGTGTTTTTACATGCAAGGAAGGGGGAGGGGAAGTAGCTGAG
GAAGAGGGGATCGAAAAAGCTGACGACGCGAAGAGATGTTGTGGTCTGAC
TGAGTTGATCCACGTTGAGCCGATCAAAAGTGTTCCACGTTTTATGAAAG
ACTTTTATTATCACGTGTTGCACTGTCAGTTTGGCATAAAAGCAGGGAGT
GTCCATTCTTTTGGCTAACATCCTCCCCCTACACCCTCCTTACGTCACCG
TTTTTCCATAGACTCACCCCTTCACCCAGACGTGCGTCCTCGCGTTAAGA
AGAACCATGCGGCGTCATTGCCACGTCTTTGCGGCTGCCACTGGACTTCT
ATGTTTAAGCGGGAGCATATTGGCGTTTCGCCCCCCTGCTTTCCAAGCCG
TGAGCCGGACCAAGTCCACGCTTGCGCATGGTCTCGGAAGCAAGCTCTTG
AGACCTCGACTTCCCGCGAGGCACGACCGTCCCGTTAAAGCTGCCTTGGA
CCCGGAGAGCATCTCGACCGCGGTCAATGTGGCTGCGGGTGCAAGCAACC
CCCTCTCGGGCATCACCAACAACCTGACCTCCCTCCTCGTCCTGGCAGTG
ATCGTGGCAGTGCACGAAATGGGGCACTTCATCGGGGCCCGCTCCCAGGG
CATCAAAGTGCGGAACTTCAGTATTGGCTTTGGTCCTCGATTGTTGTCCT
TCAAGGAGGGGCCAGAGGACGACGACATTGAGTACACGCTGCGGGCGATC
CCCATGGGCGGCTTTGTGTCCTTTCCCCCCCACTACGAGATCGACAACGA
CGGGGACATGATCCGGTACGAGGATAAGGACCTCCTGCAAAATCGCCCCC
CCCTGCAGCAAGCTATCGTCATCTCTGCCGGGGTGATCGCAAATATTCTC
TTGTCCTTCTCCCTCCTCCTCGGCTCTGTGGCCACCACCGGCCTCCCTCG
ACCTCAGTTCAGCGATGGGCCCTACGTCATGCGCCTGGTCGAGAAGGACT
GCCCGGCCGCCCGAGCCGGCATCCAACCCGAAGATTTGATCCTGGCTGTG
AATGGGCACAAGGTGAGCGGGGACGAGAAAGGGCTTAATGGTGCCGTTTC
CCTCATCTCCCAGTCCAACGGCCAGCCCGTTGAGTTGCAGCTTCGGCGCA
AAGGAGTCGAACTGTTGAAAACGGTAACCCCTCAGTTGAATCCGGAAACG
GGCCGCAACAGCATCGGTGTCCAGATGGCGGCGCACATTGAAAAAGTGAA
GCTGATCAAAGCCAAAGACCCTGCACAGGCCTTGGAGTACTCAGTTCAAG
AGCTTGGTGCCATGCTGCGGGAAGCCTCCTCTTCCTTGCGCCGCTTTTCC
TCCGCGGGCATGGAGGGCTTGACAGGCCCATTGGGTATTGTGCAAGTGGG
CGCCGACTTAGCAGCAGTGGACCAGCTCGCCTTGATCAAGTTCGCGGCGT
TTATCAGCATCAACCTGGCGGTGGTGAACGCGTTGCCTTTCCCGGGTTTG
GACGGGGGCCAGATGATTTTTGTGCTTCTGGAGGCTTTGCGCGGGAAACG
GTTGTCGCCTCAATTGGAGAATGGGATCAACGCTGTGGCAGTTCTGTTGC
TGGCCTCCCTGTCGCTGAGCCTGATTGCTGGAGACATCACTAGGGGAATG
TCTAGCCTGGACAAGGTCATCGAGGCCAACCCCTTGCTTGACTCCCCACT
CAAGTAGGCCGGACTCTGAATGAGAATTTTTGTGTCAACAAATGGGTGTG
TTTCATCCTTCTTTTTTCCAACTCTTTTGACCAAAAAAATGTTAAGATAC
ACATGTGTGGAGGGCGTGTGAAAGTTGAGAGCGAGGGAGGGAGTTTGAAT
GAGCTACTATCGTTCGTGTATTCCTCGCCTCGCTCTTTTTTAAAAGAACT
GTTTGAGTAGAGCGATGCCCACGCGCACGCATGCATGCCATAGCAAAAGA
TACAAAGAAAAACTTTGACACGGAGATATCTCGTGACGAGCACGTGCAAT
GCTGTGCCCACGTACGAAAGAATATCTCTGAACTCACATTTTGCGACGGA
TTTTGACGAATACTTCCT
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protein sequence of rna3626

>rna3626-protein ID=rna3626-protein|Name=rna3626|organism=Nannochloropsis gaditana|type=polypeptide|length=443bp
MANATFVAELEDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDL
NTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDAL
RGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIAC
LATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEE
RDAGLAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLS
LAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVAT
LANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVV
LLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLLTKKFKFKYGNTPT
LELTLDGNQNRTTVVICIFLWVVCILLFLQPILRPRKTGGLGN
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mRNA from alignment at CM002461.1:837256..838678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3626 ID=rna3626|Name=rna3626|organism=Nannochloropsis gaditana|type=mRNA|length=1423bp|location=Sequence derived from alignment at CM002461.1:837256..838678- (Nannochloropsis gaditana)
ACCTGTGAAACAACAACTAGGCTAATGGCTAACGCCACTTTTGTGGCCGA
ACTGGAGGATGTATTACCTGTTCAAGGTCGGAAGCAGCCGCACTCCATGA
TTCGGGTGAAGCGCATCGTAAGCTTAGCTCACTCACAAGATGTAGCAGAT
CAGCAAAAGGCAGCAACGGATCTCAACACGCTAATAGGAGGAAATGCATT
CTTTCCGATGATCTCCTTCGCTCCCATGGCCCACGCATTGTGCCGATTGC
TACCAAGTCATGACCGAACTGTTGTCTACTTCGCGGCTCGCGCTGCCAAG
ACATTACTCCTTGACGACGCATTAAGAGGACAGGCTGTGCTTGTAGGCCT
ACCAGCGGTGCTTCTCCAGGCCTTACAAACCTGGCAAGAAGAAACACCTT
GTTTGAGGGAGATCTTGGGGTCACTGCAGACCCTTTCGTGGGATAAGCAC
ACTGTCAAAAGCCTCATTGCCTGCCTTGCTACTGAGTACGGGCAGAGCAC
GGGCAAGAATACGGAGCAAGCCGGCAGCCCGGGAAGTGAAAATGCACAAG
TTGATTCGATGGGCCTTATTCCATATCAACGAGGAGCTGTCCATACAAAA
CAGGACATAAGTAGCACCGAGGAGAGGGACGCTGGCCTGGCTCCGGCAGC
GCATATAACATCTACGCAGCCCATGATGGCCGCGACCACCGCAGTCACCC
TTCCCAGCGTAGGAAGGTTGGCATCGATCCTAGCCTTGCTCCAAACCAGG
GACTTGGAAGTGGTAACATTGTCCCTCGCCATTGTCGCTAACCTTTGCGC
CTACAGCGATACGTACCTTCTGACACATCAGGGATTTATCCATGCTGTGC
GGGACGTTCTTCCTCGTGTTTTGGAGGTCGCCCAAAACCAAAGCCGACTG
CTTCGTTGCTATGGAGTGGCAACATTGGCCAACGCCAGCGCCAACCCGGT
GCTGTTGGGCCGGATGAAAGAATTGGGCGGAGGGGCTGTCGTGGAGAAGA
TCGAGCAAGAAGACTTGAAGGCGAATACGGTGGCATTCGGAGGAACTCGC
GTGAGTGAATGTTGCGAGGTCGTCTTGCTGCGCCTCGCGGGTGGCAAACA
CGAAAGTCTTGGTGGAAGCGTTGCGAGCGGTAATCGGAATGACGATAAAC
TCCACGACGGCGGTGAGAGTGGCCGTGTGCTGCTCACCAAAAAGTTCAAG
TTCAAATACGGAAATACGCCCACCCTGGAGCTGACCTTGGATGGAAACCA
AAACCGAACAACCGTTGTGATATGCATTTTTTTGTGGGTGGTGTGTATTC
TCCTGTTCCTGCAGCCTATACTCAGACCACGCAAAACTGGTGGGCTCGGC
AACTGATCCGAAAGGTAGCTTGGAAAGTTATTGTATGATAAAGGAAGTAT
TCGTCAAAATCCGTCGCAAAATG
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Coding sequence (CDS) from alignment at CM002461.1:837256..838678-

>rna3626 ID=rna3626|Name=rna3626|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002461.1:837256..838678- (Nannochloropsis gaditana)
ATGGCTAACGCCACTTTTGTGGCCGAACTGGAGGATGTATTACCTGTTCA
AGGTCGGAAGCAGCCGCACTCCATGATTCGGGTGAAGCGCATCGTAAGCT
TAGCTCACTCACAAGATGTAGCAGATCAGCAAAAGGCAGCAACGGATCTC
AACACGCTAATAGGAGGAAATGCATTCTTTCCGATGATCTCCTTCGCTCC
CATGGCCCACGCATTGTGCCGATTGCTACCAAGTCATGACCGAACTGTTG
TCTACTTCGCGGCTCGCGCTGCCAAGACATTACTCCTTGACGACGCATTA
AGAGGACAGGCTGTGCTTGTAGGCCTACCAGCGGTGCTTCTCCAGGCCTT
ACAAACCTGGCAAGAAGAAACACCTTGTTTGAGGGAGATCTTGGGGTCAC
TGCAGACCCTTTCGTGGGATAAGCACACTGTCAAAAGCCTCATTGCCTGC
CTTGCTACTGAGTACGGGCAGAGCACGGGCAAGAATACGGAGCAAGCCGG
CAGCCCGGGAAGTGAAAATGCACAAGTTGATTCGATGGGCCTTATTCCAT
ATCAACGAGGAGCTGTCCATACAAAACAGGACATAAGTAGCACCGAGGAG
AGGGACGCTGGCCTGGCTCCGGCAGCGCATATAACATCTACGCAGCCCAT
GATGGCCGCGACCACCGCAGTCACCCTTCCCAGCGTAGGAAGGTTGGCAT
CGATCCTAGCCTTGCTCCAAACCAGGGACTTGGAAGTGGTAACATTGTCC
CTCGCCATTGTCGCTAACCTTTGCGCCTACAGCGATACGTACCTTCTGAC
ACATCAGGGATTTATCCATGCTGTGCGGGACGTTCTTCCTCGTGTTTTGG
AGGTCGCCCAAAACCAAAGCCGACTGCTTCGTTGCTATGGAGTGGCAACA
TTGGCCAACGCCAGCGCCAACCCGGTGCTGTTGGGCCGGATGAAAGAATT
GGGCGGAGGGGCTGTCGTGGAGAAGATCGAGCAAGAAGACTTGAAGGCGA
ATACGGTGGCATTCGGAGGAACTCGCGTGAGTGAATGTTGCGAGGTCGTC
TTGCTGCGCCTCGCGGGTGGCAAACACGAAAGTCTTGGTGGAAGCGTTGC
GAGCGGTAATCGGAATGACGATAAACTCCACGACGGCGGTGAGAGTGGCC
GTGTGCTGCTCACCAAAAAGTTCAAGTTCAAATACGGAAATACGCCCACC
CTGGAGCTGACCTTGGATGGAAACCAAAACCGAACAACCGTTGTGATATG
CATTTTTTTGTGGGTGGTGTGTATTCTCCTGTTCCTGCAGCCTATACTCA
GACCACGCAAAACTGGTGGGCTCGGCAACTGA
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Synonyms
Publications