EWM27052.1, cds3617 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27052.1 vs. NCBI_GenBank
Match: gi|585109226|gb|EWM27052.1| (expressed unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 907.901 bits (2345), Expect = 0.000e+0 Identity = 443/443 (100.00%), Postives = 443/443 (100.00%), Query Frame = 0
Query: 1 MANATFVAELEDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIACLATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEERDAGLAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVVLLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLLTKKFKFKYGNTPTLELTLDGNQNRTTVVICIFLWVVCILLFLQPILRPRKTGGLGN 443
MANATFVAELEDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIACLATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEERDAGLAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVVLLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLLTKKFKFKYGNTPTLELTLDGNQNRTTVVICIFLWVVCILLFLQPILRPRKTGGLGN
Sbjct: 1 MANATFVAELEDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIACLATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEERDAGLAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVVLLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLLTKKFKFKYGNTPTLELTLDGNQNRTTVVICIFLWVVCILLFLQPILRPRKTGGLGN 443
BLAST of EWM27052.1 vs. NCBI_GenBank
Match: gi|299470300|emb|CBN78350.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 109.383 bits (272), Expect = 1.167e-23 Identity = 60/136 (44.12%), Postives = 87/136 (63.97%), Query Frame = 0
Query: 13 VLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLI 148
+L + R P + ++ ++ LAH+ D DQ +AA ++T++ P SF P+ H L RL+ S + VV +AAR+ K L+LDDALR QA G+P+VL AL+ + +T CLREILG+LQTL +DK TV S+I
Sbjct: 8 LLDERRRDAPTLLPALQNLLQLAHAGDTDDQAQAAMGISTMVKRVRIEPS-SFGPLCHTLSRLVASEHQAVVAYAARSIKILVLDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDKETVLSVI 142
BLAST of EWM27052.1 vs. NCBI_GenBank
Match: gi|299470302|emb|CBN78352.2| (hypothetical protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 99.7525 bits (247), Expect = 7.542e-20 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 0
Query: 28 VKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTV 144
+++++ LA+S+D Q +A ++ +I + SF P+ H L RL S R VV +AAR K L+L+DALR QA + G+P+VL AL+ W+++ PCLREILG+LQTL D TV
Sbjct: 22 LQKLLQLAYSEDTDQQLQAVMGISKMIERHPA-DASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATV 137 HSP 2 Score: 75.0998 bits (183), Expect = 2.154e-11 Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 0
Query: 220 ATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTR 342
A T + + G LAS+L LL T ++E+ L+ AI AN+ ++SD+ LLT++ I + D + +L+ +++ +R YG+A LANA A+PVL G KELG ++ + +D K +T A G R
Sbjct: 134 AATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLSFSDSLLLTNEECIDGISDSMGILLDAVKSRDGAIRDYGLAALANACAHPVLAGCAKELGALELLRRNFLQD-KVSTEASGRWR 255 The following BLAST results are available for this feature:
BLAST of EWM27052.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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