EWM27052.1, cds3617 (CDS) Nannochloropsis gaditana

Overview
NameEWM27052.1
Unique Namecds3617
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:837323..838654 -

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Properties
Property NameValue
Protein idEWM27052.1
Productexpressed unknown protein
Orig transcript idgnl|cribi|Naga_100056g32.10465.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:837323..838654 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR011989ARM-like
Homology
BLAST of EWM27052.1 vs. NCBI_GenBank
Match: gi|585109226|gb|EWM27052.1| (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 907.901 bits (2345), Expect = 0.000e+0
Identity = 443/443 (100.00%), Postives = 443/443 (100.00%), Query Frame = 0
Query:    1 MANATFVAELEDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIACLATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEERDAGLAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVVLLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLLTKKFKFKYGNTPTLELTLDGNQNRTTVVICIFLWVVCILLFLQPILRPRKTGGLGN 443
            MANATFVAELEDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIACLATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEERDAGLAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVVLLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLLTKKFKFKYGNTPTLELTLDGNQNRTTVVICIFLWVVCILLFLQPILRPRKTGGLGN
Sbjct:    1 MANATFVAELEDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIACLATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEERDAGLAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVVLLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLLTKKFKFKYGNTPTLELTLDGNQNRTTVVICIFLWVVCILLFLQPILRPRKTGGLGN 443          
BLAST of EWM27052.1 vs. NCBI_GenBank
Match: gi|299470300|emb|CBN78350.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.383 bits (272), Expect = 1.167e-23
Identity = 60/136 (44.12%), Postives = 87/136 (63.97%), Query Frame = 0
Query:   13 VLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLI 148
            +L  + R  P  +  ++ ++ LAH+ D  DQ +AA  ++T++      P  SF P+ H L RL+ S  + VV +AAR+ K L+LDDALR QA   G+P+VL  AL+  + +T CLREILG+LQTL +DK TV S+I
Sbjct:    8 LLDERRRDAPTLLPALQNLLQLAHAGDTDDQAQAAMGISTMVKRVRIEPS-SFGPLCHTLSRLVASEHQAVVAYAARSIKILVLDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDKETVLSVI 142          
BLAST of EWM27052.1 vs. NCBI_GenBank
Match: gi|299470302|emb|CBN78352.2| (hypothetical protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 99.7525 bits (247), Expect = 7.542e-20
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 0
Query:   28 VKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTV 144
            +++++ LA+S+D   Q +A   ++ +I  +      SF P+ H L RL  S  R VV +AAR  K L+L+DALR QA + G+P+VL  AL+ W+++ PCLREILG+LQTL  D  TV
Sbjct:   22 LQKLLQLAYSEDTDQQLQAVMGISKMIERHPA-DASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATV 137          

HSP 2 Score: 75.0998 bits (183), Expect = 2.154e-11
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 0
Query:  220 ATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTR 342
            A T + +   G LAS+L LL T ++E+  L+ AI AN+ ++SD+ LLT++  I  + D +  +L+  +++   +R YG+A LANA A+PVL G  KELG   ++ +   +D K +T A G  R
Sbjct:  134 AATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLSFSDSLLLTNEECIDGISDSMGILLDAVKSRDGAIRDYGLAALANACAHPVLAGCAKELGALELLRRNFLQD-KVSTEASGRWR 255          
The following BLAST results are available for this feature:
BLAST of EWM27052.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585109226|gb|EWM27052.1|0.000e+0100.00expressed unknown protein [Nannochloropsis gaditan... [more]
gi|299470300|emb|CBN78350.1|1.167e-2344.12expressed unknown protein [Ectocarpus siliculosus][more]
gi|299470302|emb|CBN78352.2|7.542e-2044.44hypothetical protein (Partial), partial [Ectocarpu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3626rna3626Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications