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Properties
| Property Name | Value |
|---|
| Product | Peptidase S54, rhomboid domain protein |
| Orig transcript id | gnl|cribi|Naga_100056g39.10446.mrna |
| Orig protein id | gnl|cribi|Naga_100056g39.10446 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:822671..824222 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3619 ID=rna3619|Name=rna3619|organism=Nannochloropsis gaditana|type=mRNA|length=1281bp
ATGAGATTTTCATGCCATCATGGAAACTATGTGTACCTGACGATTCCACC
GCACACAATGTCATCATCTACACCACATCCAGATCCTTGCTGTTGCCTTC
TTTCATGAGCGGGGCCCGGAGTGGCGGTGCACTGGAAGCAGTGCGTGTGC
GGGAACTGGAACGAGGCTGCGTTGTAGCGGGCGCAGCGCCTGTGAGCTGC
CTAGATTACCATCGAGAGGGGGAGTATTTGGTAGCAACATCGGACGACGA
TAGTGTGCGATTAATCAATGCCCTGGAGGGTAAGGAACGGAAAAAAGTTT
TTTGTAAAAAGTACGGCGTGGAGCTGGCCCGCTTCACACACCATCCCCAG
GGCATAATATGCAGCAGCCGGCAATCCACTAACCAAGCGGCGGCCCCCAC
GGGGTCCTCGGCACATGACATCCGATATTTGTCGCTGTACGACAACCAGT
ACCTCCGGTTTTTCTCCGGGCATGAAGCGCGCGTGACGGGACTCGCCATG
TCGTATACAGATGACCGCTTTTTGAGCGCGTCAATGGACGGTACTGTGCG
CATTTGGACCTTGCAGCAGCCCAAATGCTTGGGTTTGGGCAGTATTGGTG
GCGATGGTGGCAGCAATCACAATGCTCAGCCCGTCTTGGCGGAGTTCGAT
CCCTCTGGCTTGGTGTTCGCGGCGTGTGCCCAGGTCCACGACAGGCATTT
ACTTAAACTGTACGACGCTCGAAAGTTCAGCGAGGGAGCTTTCGAGAGTT
TCGGAATCTCTGAAGCTGAGCTTCGGGAGACGCTTCAGCAGCAGCAACCG
ACCATCGATCCGGAGGTAGCTCGAAAACTGGTTCAAGCCCCATGGACGGA
TATGCATTTCAGCGCCGATGGGAAAAACCTGTTGGTCTCGACGCGCGCGG
GGATGACGCTGGTGATTGACACCTACGATCTGCAAATTACGCGGTTTCTA
ACAGGGTACCGGAATACCGGAGGATTAGACATCACGGCCTGCTACACGCC
GGACGCCGGCCACATATTGACGGGTTCTGAGGATGGGAATGTCTGTGTGT
TCGACGCCGGCGAGGAGAGGACGATGGATGGGATCGTGCACCGCTTGGAG
GGGCATCCTCGACCAGTCCAGCAGGTTAGGTGCAATCCTGTCTACGAGCA
AGTGGCGAGCGGGTGCAGCCACGTGGTTCTGTGGATATCGGCAACAGGGA
AAGGAAAATGAGGAGAAAGGCTCGGCACTGTAAATGATCTCGCGGCATAT
TATATTAATAAAGAAAGTATACTGTCAAATC back to topprotein sequence of rna3619 >rna3619-protein ID=rna3619-protein|Name=rna3619|organism=Nannochloropsis gaditana|type=polypeptide|length=451bp
MLPLASQWRSRSSASPHRQKLSAGRGYSTLGPMQQQQPTRLQETLSKIPL
CTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHL
GLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFL
AAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARA
YPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLE
RSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVG
SGVSGTAAGSAGVAGGAVGSLPSTVQNPPTATVAAGATNQASPTRLGGAG
GWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQTTARVKFAEQKHIAREVE
VGVMKVRSRRRNPTVGPHLTLTRRSGPTWCLLSGKRGTGLLSEWNQSTRP
Q back to topmRNA from alignment at CM002461.1:822671..824222- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3619 ID=rna3619|Name=rna3619|organism=Nannochloropsis gaditana|type=mRNA|length=1552bp|location=Sequence derived from alignment at CM002461.1:822671..824222- (Nannochloropsis gaditana)
ATGCTGCCATTGGCATCGCAGTGGCGGTCTCGTTCTTCAGCATCTCCACA
TCGTCAAAAACTATCGGCAGGCCGCGGTTACTCCACTCTTGGACCAATGC
AGCAACAACAACCCACCCGCCTGCAAGAGACACTTTCTAAAATTCCTTTA
TGTACTACTTTAACAACCCTTTTGTGTCTAATTCTTCAGCTGTGCGTCGT
CATTTTGGGATGGAACGTGAATTTATTCTCCATTTCATATGCTGCAGTGG
TTTATGATCACGAGTACTACCGGCTTTTCACCAGCGCCTATTTCCATCTT
GGGCTCTTCCACATTGCCATGAATATGCTGTCCTTTGTTGGTATCGGAGC
ATGGCTTGAAATGCGGATGGGCACCATGTATTTTTTTCTCACGATCCTCT
GGTCCACCATTCTCACCAATTCATTGTACATTGGCATCTGCTCATTCCTT
GGTAAGTAAAGGAAAAGGTCCGGTGGCTACCAAAATGGACTCACGCAAAT
GCTGAGATAGACAAATCACTATTACAATGCACATCTTCCCGAGATTAATG
CCTGGTCCCACCGTTTCACAGCCGCGGTCACAAACCACCAGCAGTGGCTC
TTCTACGCAAGCGCAGGCTTCTCGGGAGTCATTTTCACCTTGGCCGTTCT
TGAATCCCATTCTTCCCCGCCCAATGCCACGCGCTCTATCATGGGCATGT
GCCAAGTTCCGGCGCGCGCTTATCCCTGGGTGTTGCTGATCATCATTCAA
CTCCTTCTCCCACGCATCTCCTTTGTCGGCCATCTCTCAGGCCTGCTGAT
CGGAGTCTTGCAATCCTACGGCTGTCTGGCCTTCCTCTTCCCGTCATCCG
GCAACTTGAACCGACTAGAGCGCAGTCCGGCATTTGCATGCATGACTCGG
TGCCCACAGTACATGCTTTGCCCCGACGAATCCGATCACGTCCTGCCCCG
CGGCGTGGATGTTTTGCAGTGCTGTCCCTGCTCCTCCCGAGCCAGCAGCA
GCCCGCGTCGATTCGTCGGCAGCGGCGTGTCGGGGACTGCAGCAGGATCT
GCAGGAGTGGCAGGTGGTGCAGTAGGGTCGTTACCTAGCACTGTCCAAAA
TCCACCGACGGCCACAGTGGCCGCGGGCGCGACGAACCAGGCCTCGCCAA
CGCGGCTGGGGGGTGCTGGAGGATGGAGTCGTCTGGGAGATTCGGGGAGA
ATGGGAGGAGAGGAGGATGTGGAGATAGCCTACGATGGGCAGCAAGTGGG
GGGTGAAGGTCAGAGGCAGATGGTCTTGTGAATTTAAGGACTGAGGGGGT
AGGGGGCGCACGTCTCGGTAGGAGAGGAAGTGTAAAAGGCAAACTACAGC
ACGTGTAAAATTTGCGGAGCAAAAACACATAGCACGCGAAGTGGAAGTTG
GAGTTATGAAAGTGCGATCAAGAAGACGCAACCCGACGGTGGGGCCTCAC
TTGACCCTAACCCGACGGTCGGGCCCCACTTGGTGTCTGCTCTCAGGAAA
ACGAGGTACTGGCCTGCTATCGGAATGGAATCAAAGCACTCGACCTCAAT
GA back to topCoding sequence (CDS) from alignment at CM002461.1:822671..824222- >rna3619 ID=rna3619|Name=rna3619|organism=Nannochloropsis gaditana|type=CDS|length=4068bp|location=Sequence derived from alignment at CM002461.1:822671..824222- (Nannochloropsis gaditana)
GAGAGGAAGTGTAAAAGGCAAACTACAGCACGTGTAAAATTTGCGGAGCA
AAAACACATAGCACGCGAAGTGGAAGTTGGAGTTATGAAAGTGCGATCAA
GAAGACGCAACCCGACGGTGGGGCCTCACTTGACCCTAACCCGACGGTCG
GGCCCCACTTGGTGTCTGCTCTCAGGAAAACGAGGTACTGGCCTGCTATC
GGAATGGAATCAAAGCACTCGACCTCAATGACCGCGGTCACAAACCACCA
GCAGTGGCTCTTCTACGCAAGCGCAGGCTTCTCGGGAGTCATTTTCACCT
TGGCCGTTCTTGAATCCCATTCTTCCCCGCCCAATGCCACGCGCTCTATC
ATGGGCATGTGCCAAGTTCCGGCGCGCGCTTATCCCTGGGTGTTGCTGAT
CATCATTCAACTCCTTCTCCCACGCATCTCCTTTGTCGGCCATCTCTCAG
GCCTGCTGATCGGAGTCTTGCAATCCTACGGCTGTCTGGCCTTCCTCTTC
CCGTCATCCGGCAACTTGAACCGACTAGAGCGCAGTCCGGCATTTGCATG
CATGACTCGGTGCCCACAGTACATGCTTTGCCCCGACGAATCCGATCACG
TCCTGCCCCGCGGCGTGGATGTTTTGCAGTGCTGTCCCTGCTCCTCCCGA
GCCAGCAGCAGCCCGCGTCGATTCGTCGGCAGCGGCGTGTCGGGGACTGC
AGCAGGATCTGCAGGAGTGGCAGGTGGTGCAGTAGGGTCGTTACCTAGCA
CTGTCCAAAATCCACCGACGGCCACAGTGGCCGCGGGCGCGACGAACCAG
GCCTCGCCAACGCGGCTGGGGGGTGCTGGAGGATGGAGTCGTCTGGGAGA
TTCGGGGAGAATGGGAGGAGAGGAGGATGTGGAGATAGCCTACGATGGGC
AGCAAATGCTGCCATTGGCATCGCAGTGGCGGTCTCGTTCTTCAGCATCT
CCACATCGTCAAAAACTATCGGCAGGCCGCGGTTACTCCACTCTTGGACC
AATGCAGCAACAACAACCCACCCGCCTGCAAGAGACACTTTCTAAAATTC
CTTTATGTACTACTTTAACAACCCTTTTGTGTCTAATTCTTCAGCTGTGC
GTCGTCATTTTGGGATGGAACGTGAATTTATTCTCCATTTCATATGCTGC
AGTGGTTTATGATCACGAGTACTACCGGCTTTTCACCAGCGCCTATTTCC
ATCTTGGGCTCTTCCACATTGCCATGAATATGCTGTCCTTTGTTGGTATC
GGAGCATGGCTTGAAATGCGGATGGGCACCATGTATTTTTTTCTCACGAT
CCTCTGGTCCACCATTCTCACCAATTCATTGTACATTGGCATCTGCTCAT
TCCTTGGAGAGGAAGTGTAAAAGGCAAACTACAGCACGTGTAAAATTTGC
GGAGCAAAAACACATAGCACGCGAAGTGGAAGTTGGAGTTATGAAAGTGC
GATCAAGAAGACGCAACCCGACGGTGGGGCCTCACTTGACCCTAACCCGA
CGGTCGGGCCCCACTTGGTGTCTGCTCTCAGGAAAACGAGGTACTGGCCT
GCTATCGGAATGGAATCAAAGCACTCGACCTCAATGACCGCGGTCACAAA
CCACCAGCAGTGGCTCTTCTACGCAAGCGCAGGCTTCTCGGGAGTCATTT
TCACCTTGGCCGTTCTTGAATCCCATTCTTCCCCGCCCAATGCCACGCGC
TCTATCATGGGCATGTGCCAAGTTCCGGCGCGCGCTTATCCCTGGGTGTT
GCTGATCATCATTCAACTCCTTCTCCCACGCATCTCCTTTGTCGGCCATC
TCTCAGGCCTGCTGATCGGAGTCTTGCAATCCTACGGCTGTCTGGCCTTC
CTCTTCCCGTCATCCGGCAACTTGAACCGACTAGAGCGCAGTCCGGCATT
TGCATGCATGACTCGGTGCCCACAGTACATGCTTTGCCCCGACGAATCCG
ATCACGTCCTGCCCCGCGGCGTGGATGTTTTGCAGTGCTGTCCCTGCTCC
TCCCGAGCCAGCAGCAGCCCGCGTCGATTCGTCGGCAGCGGCGTGTCGGG
GACTGCAGCAGGATCTGCAGGAGTGGCAGGTGGTGCAGTAGGGTCGTTAC
CTAGCACTGTCCAAAATCCACCGACGGCCACAGTGGCCGCGGGCGCGACG
AACCAGGCCTCGCCAACGCGGCTGGGGGGTGCTGGAGGATGGAGTCGTCT
GGGAGATTCGGGGAGAATGGGAGGAGAGGAGGATGTGGAGATAGCCTACG
ATGGGCAGCAAATGCTGCCATTGGCATCGCAGTGGCGGTCTCGTTCTTCA
GCATCTCCACATCGTCAAAAACTATCGGCAGGCCGCGGTTACTCCACTCT
TGGACCAATGCAGCAACAACAACCCACCCGCCTGCAAGAGACACTTTCTA
AAATTCCTTTATGTACTACTTTAACAACCCTTTTGTGTCTAATTCTTCAG
CTGTGCGTCGTCATTTTGGGATGGAACGTGAATTTATTCTCCATTTCATA
TGCTGCAGTGGTTTATGATCACGAGTACTACCGGCTTTTCACCAGCGCCT
ATTTCCATCTTGGGCTCTTCCACATTGCCATGAATATGCTGTCCTTTGTT
GGTATCGGAGCATGGCTTGAAATGCGGATGGGCACCATGTATTTTTTTCT
CACGATCCTCTGGTCCACCATTCTCACCAATTCATTGTACATTGGCATCT
GCTCATTCCTTGGAGAGGAAGTGTAAAAGGCAAACTACAGCACGTGTAAA
ATTTGCGGAGCAAAAACACATAGCACGCGAAGTGGAAGTTGGAGTTATGA
AAGTGCGATCAAGAAGACGCAACCCGACGGTGGGGCCTCACTTGACCCTA
ACCCGACGGTCGGGCCCCACTTGGTGTCTGCTCTCAGGAAAACGAGGTAC
TGGCCTGCTATCGGAATGGAATCAAAGCACTCGACCTCAATGACCGCGGT
CACAAACCACCAGCAGTGGCTCTTCTACGCAAGCGCAGGCTTCTCGGGAG
TCATTTTCACCTTGGCCGTTCTTGAATCCCATTCTTCCCCGCCCAATGCC
ACGCGCTCTATCATGGGCATGTGCCAAGTTCCGGCGCGCGCTTATCCCTG
GGTGTTGCTGATCATCATTCAACTCCTTCTCCCACGCATCTCCTTTGTCG
GCCATCTCTCAGGCCTGCTGATCGGAGTCTTGCAATCCTACGGCTGTCTG
GCCTTCCTCTTCCCGTCATCCGGCAACTTGAACCGACTAGAGCGCAGTCC
GGCATTTGCATGCATGACTCGGTGCCCACAGTACATGCTTTGCCCCGACG
AATCCGATCACGTCCTGCCCCGCGGCGTGGATGTTTTGCAGTGCTGTCCC
TGCTCCTCCCGAGCCAGCAGCAGCCCGCGTCGATTCGTCGGCAGCGGCGT
GTCGGGGACTGCAGCAGGATCTGCAGGAGTGGCAGGTGGTGCAGTAGGGT
CGTTACCTAGCACTGTCCAAAATCCACCGACGGCCACAGTGGCCGCGGGC
GCGACGAACCAGGCCTCGCCAACGCGGCTGGGGGGTGCTGGAGGATGGAG
TCGTCTGGGAGATTCGGGGAGAATGGGAGGAGAGGAGGATGTGGAGATAG
CCTACGATGGGCAGCAAATGCTGCCATTGGCATCGCAGTGGCGGTCTCGT
TCTTCAGCATCTCCACATCGTCAAAAACTATCGGCAGGCCGCGGTTACTC
CACTCTTGGACCAATGCAGCAACAACAACCCACCCGCCTGCAAGAGACAC
TTTCTAAAATTCCTTTATGTACTACTTTAACAACCCTTTTGTGTCTAATT
CTTCAGCTGTGCGTCGTCATTTTGGGATGGAACGTGAATTTATTCTCCAT
TTCATATGCTGCAGTGGTTTATGATCACGAGTACTACCGGCTTTTCACCA
GCGCCTATTTCCATCTTGGGCTCTTCCACATTGCCATGAATATGCTGTCC
TTTGTTGGTATCGGAGCATGGCTTGAAATGCGGATGGGCACCATGTATTT
TTTTCTCACGATCCTCTGGTCCACCATTCTCACCAATTCATTGTACATTG
GCATCTGCTCATTCCTTG back to top
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