EWM27033.1, cds3610 (CDS) Nannochloropsis gaditana

Overview
NameEWM27033.1
Unique Namecds3610
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:823772..824222 -
Alignment locationCM002461.1:822978..823651 -
Alignment locationCM002461.1:822671..822901 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27033.1
ProductPeptidase S54, rhomboid domain protein
Orig transcript idgnl|cribi|Naga_100056g39.10446.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:823772..824222 -
CM002461.1supercontigCM002461.1:822978..823651 -
CM002461.1supercontigCM002461.1:822671..822901 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR022764Peptidase_S54_rhomboid_dom
Homology
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|585109207|gb|EWM27033.1| (Peptidase S54, rhomboid domain protein [Nannochloropsis gaditana])

HSP 1 Score: 923.309 bits (2385), Expect = 0.000e+0
Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0
Query:    1 MLPLASQWRSRSSASPHRQKLSAGRGYSTLGPMQQQQPTRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVGSGVSGTAAGSAGVAGGAVGSLPSTVQNPPTATVAAGATNQASPTRLGGAGGWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQTTARVKFAEQKHIAREVEVGVMKVRSRRRNPTVGPHLTLTRRSGPTWCLLSGKRGTGLLSEWNQSTRPQ 451
            MLPLASQWRSRSSASPHRQKLSAGRGYSTLGPMQQQQPTRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVGSGVSGTAAGSAGVAGGAVGSLPSTVQNPPTATVAAGATNQASPTRLGGAGGWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQTTARVKFAEQKHIAREVEVGVMKVRSRRRNPTVGPHLTLTRRSGPTWCLLSGKRGTGLLSEWNQSTRPQ
Sbjct:    1 MLPLASQWRSRSSASPHRQKLSAGRGYSTLGPMQQQQPTRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVGSGVSGTAAGSAGVAGGAVGSLPSTVQNPPTATVAAGATNQASPTRLGGAGGWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQTTARVKFAEQKHIAREVEVGVMKVRSRRRNPTVGPHLTLTRRSGPTWCLLSGKRGTGLLSEWNQSTRPQ 451          
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|224001444|ref|XP_002290394.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973816|gb|EED92146.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 172.17 bits (435), Expect = 3.365e-46
Identity = 94/231 (40.69%), Postives = 141/231 (61.04%), Query Frame = 0
Query:   39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPD 269
            +R  ETL+ IPL T     LC  + L  +     ++ F++    V+Y +EYYR+ TS+ FH  L HI MNM+S + IG  LE R GT    LT+LW  +LT+ +Y+     L     +++ ++  S GFSGVIF L+VLE++ + PN +RS+ GM QV ++ YPW LL+++Q ++P+ISF+GHLSG+L+G LQ +G    +FPS   L  LE   A   +T  P ++  P+
Sbjct:    2 SRASETLASIPLATLSIMALCCFVYLYQLAFDPTLHNFTMCPRLVLYMNEYYRIITSSLFHGSLMHIGMNMMSTMAIGTSLEKRFGTFTMALTVLWGVLLTSVIYMTTSWLLYVGFGYEKMMYQHSLGFSGVIFQLSVLEANLT-PNRSRSVFGMIQVSSKMYPWCLLVVLQFIMPQISFLGHLSGILLGTLQLHGADK-IFPSDAYLQDLETWSALEAITTKPGFVKMPE 230          
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|299473184|emb|CBN78760.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 169.859 bits (429), Expect = 1.616e-45
Identity = 92/213 (43.19%), Postives = 128/213 (60.09%), Query Frame = 0
Query:   39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAA-VTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLE 250
              L E   ++PLCT     LC+ILQ CV +   N+  + +  + ++Y  EYYR+ T A  H GL HI  NM+SF+ IG+ LE+  GT+    TILWS IL   ++ G    +   VT+   ++   S GFSGVIFTLA++ES+ S    TRS+ GM +VP R YPWVLL+++ + +  ISFVGHLSG+L+GV+  YG    L PS      +E
Sbjct:    4 NNLGEVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSSLEVAFGTLSLLFTILWSMILAGVVHCGAEWVMTVWVTHDPTYVNQPSVGFSGVIFTLALMESYRS-TQPTRSVFGMMRVPTRMYPWVLLVLLSVFMRDISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEME 215          
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|219112025|ref|XP_002177764.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410649|gb|EEC50578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 157.147 bits (396), Expect = 9.821e-41
Identity = 98/235 (41.70%), Postives = 139/235 (59.15%), Query Frame = 0
Query:   39 TRLQETLSKIPLCTTLTTLLCLILQLCV-VILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESD 272
            +R  E L + P  TT    LC+IL +   V+L  N+ +F++    V+Y  E YR+ TSA FH  + H+AMNM++ + IG+ LE R GT    L ILWS +LT  LYIGI  FLA +    Q +   S GFSGVIF L+VLES+    + +RS+ G   VP+  YPWVLL+ +Q+ +P +SF GHL G+L+G LQ YG L ++      L R++       +TR  Q+  CP  ++
Sbjct:    2 SRFNELLQRTPQTTTGIIALCVILHVVTKVLLDLNLRIFTLCPQLVIYRLEIYRIATSALFHGNIMHLAMNMMTTLAIGSLLEKRFGTFRLLLIILWSILLTGILYIGIALFLAIIIQKNQLMRQHSVGFSGVIFHLSVLESNLG-THQSRSVFGFFDVPSYLYPWVLLVGLQIFMPGLSFTGHLVGILVGTLQLYGGLNWILWGEERLKRVDNWSRLDFLTR--QHNFCPTTAE 233          
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|1072230888|gb|OEU15621.1| (hypothetical protein FRACYDRAFT_159831, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 151.369 bits (381), Expect = 1.623e-39
Identity = 87/215 (40.47%), Postives = 131/215 (60.93%), Query Frame = 0
Query:   40 RLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLA-FLFPSSGNLNRLERSP 253
            R  + L ++P  T     +C+ L +  + + W++ LF++    +++ +EYYR+FTS +FH  L HI MNMLS   I   LE R+GT+   ++I WS +LT+++YI I      +  +  W++  S GFSG+IF L+VLES+  P    RS+ G   VP+  YPW LL+I+QL++P +SF+GHLSG+L G L+ YG    FLF S   L  +E  P
Sbjct:    2 RSTDALRQLPPATLGVITICVFLFIIQMTMTWDIQLFTMCPRLILFMNEYYRIFTSVFFHANLMHIGMNMLSTSTISTVLEKRIGTLRLIVSIWWSILLTSTIYIIIAYTAYIIFGYDTWMYQHSIGFSGIIFHLSVLESYLHP--GQRSVFGFFSVPSFVYPWALLLILQLIMPNLSFLGHLSGILTGSLEYYGVWDRFLFLSDSFLIEIESLP 214          
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|1210525254|dbj|GAX16013.1| (rhomboid domain-containing protein 1 [Fistulifera solaris])

HSP 1 Score: 139.428 bits (350), Expect = 1.994e-34
Identity = 81/228 (35.53%), Postives = 124/228 (54.39%), Query Frame = 0
Query:   39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCL-AFLFPSSGNLNRLERSPAFACMTRCPQYM 265
            +RL E +  +P  T      C+++  C  IL   +  F++    +V   E YR+ T A+FH    HIA+NMLS   I + +E R+GT+Y   +   S ++ + +YI I      + N+  +L + S GFSGV+F + VL+  SS  +  RS+ G+ +VP   YP+ LL ++QL+LP ISF GHLSG++ G L S GC    L      L  +E  P    +TR P ++
Sbjct:    2 SRLNEEVQLVPPSTLTVIAFCVVVYGCQTILNLPLQTFTLCPQRIVEHWEVYRILTHAFFHANFLHIALNMLSAFAISSAVEKRVGTVYHLFSTFMSIVMISMVYIAISLLFLVIGNNDLYLQH-SVGFSGVLFHMLVLDVTSS--SQPRSLFGIIEVPPLFYPFALLSVLQLILPNISFYGHLSGIVTGFLHSAGCFDGILMIDERRLQTMEEWPFVNILTRSPSFV 226          
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|1210529913|dbj|GAX11446.1| (hypothetical protein FisN_22Lh130 [Fistulifera solaris])

HSP 1 Score: 134.806 bits (338), Expect = 1.022e-32
Identity = 84/228 (36.84%), Postives = 126/228 (55.26%), Query Frame = 0
Query:   39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCL-AFLFPSSGNLNRLERSPAFACMTRCPQYM 265
            +RL E +  +P  T     +C ++  C  +    +  F++    +V   E YR+ T A+FH    HIA+NMLS   I + +E R+GT Y  L+   S ++   +YIGI     A+ N+  +L +A  GFSGV+F + VL+  SS  + +RS+ GM +VP   YP+ LL+++QL+LP ISF GHLSG+L G L S GC    L      L  +E  P    +TR P ++
Sbjct:    2 SRLNEEMQLVPPSTLTVIAVCFVVYGCQTVFDLPLQTFTLCPQRIVKHWEVYRILTHAFFHANFLHIALNMLSAFAISSSVEKRVGTFYHLLSTFLSIVMIPMVYIGISLLFLAMGNNDLYLQHA-VGFSGVLFHMLVLDVTSS--SQSRSLFGMVEVPPLFYPFALLLVLQLILPNISFYGHLSGILTGFLHSAGCFDGILITDERRLQTMEEWPVVNVLTRSPSFV 226          
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|397569632|gb|EJK46866.1| (hypothetical protein THAOC_34449 [Thalassiosira oceanica])

HSP 1 Score: 133.265 bits (334), Expect = 1.407e-32
Identity = 72/159 (45.28%), Postives = 101/159 (63.52%), Query Frame = 0
Query:  113 VGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDES 271
            + IG+ LE ++GT+   LTI +  +LT ++YI I   L AV   ++ +   +AGFSGVIF L+VLES+ SP N TRS+ G+  V +R YPW LL+ IQL++P ISF+GHLSG+LIG LQ +G L  LFP    L   E S   + +   P Y+  P+ +
Sbjct:    1 MAIGSSLERQIGTIMMALTIFFGILLTGAIYISISWLLFAVFGLEKMMLQHAAGFSGVIFQLSVLESNLSP-NRTRSVFGVFTVSSRMYPWALLVAIQLVMPHISFLGHLSGILIGSLQYHGALNVLFPREEYLQECETSERLSVLRAQPSYVPTPEST 158          
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|1191686161|gb|OTG38122.1| (putative RHOMBOID-like protein 15 [Helianthus annuus])

HSP 1 Score: 137.117 bits (344), Expect = 1.577e-32
Identity = 96/388 (24.74%), Postives = 179/388 (46.13%), Query Frame = 0
Query:   38 PTRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISY--AAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGT--MYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVGSGVSGTAAGSAGVAGGAVGSLP-----------STVQN---PPTATVAAGATNQASPTRLGGAGGWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQTTARVKFAEQKHIAREVEVGVMKVR 407
            PTR ++    +P  T++   +C  + L  +++G++ +   + +  +AV+   + YR+FTS  FH  + H+  NM++ V +G+ LE  MG+  + + + +L +T     L I + +    V ++  ++   + GFSGV+F++ V+E+  S    +RS+ G+  VPA+ YPW+LL++ QLL+  IS +GHL G+L G   +YG   F+ P S   + +E +   +   R P+Y++C                           P  ++ +  +     S  +AG    +L            ST +N   P      +   ++  PT    +   +RL +SG        + A D  Q+R  +RQ          + I + + +G  K +
Sbjct:   12 PTRFKQWWEGMPFLTSVVVAVCTAIYLVCLLIGYD-SFLEVCFLPSAVISKFQVYRVFTSILFHGSILHLVFNMMALVPLGSELERVMGSIRLLYVIVLLATTSAIFHLLITLIAAFNPVYSYNHFMDECAIGFSGVLFSMIVIETSLSGVQ-SRSVFGLFNVPAKLYPWMLLVVFQLLMTNISLLGHLCGILSGFAYTYGLFNFIIPGSSFFSGIESASWLSTCVRRPKYIMC-----------------------TGGDPSGYIPTYTTRNTTSSESMAGNMWTNLSSWMPRREVLPQSTEENSRFPGRGRTLSAPQSETGPTNGNDSSLQARLLESGNSPVHPSSQEAIDAGQQRINRRQPGIEATVPSDEEIQKLLAMGFDKTQ 374          
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|302776366|ref|XP_002971354.1| (hypothetical protein SELMODRAFT_147697 [Selaginella moellendorffii] >gi|300161336|gb|EFJ27952.1| hypothetical protein SELMODRAFT_147697 [Selaginella moellendorffii])

HSP 1 Score: 137.502 bits (345), Expect = 1.742e-32
Identity = 82/241 (34.02%), Postives = 128/241 (53.11%), Query Frame = 0
Query:   39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGW-NVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLA--AVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLP 276
            TR  +  + IP  T  T +LC+ + +  +++G+ N      S  +V+ + + YR  T+  FH  L H+  NML+ V IG+ LE  MG++ +   IL   +    ++I I   +A   +  H+  L     GFSG++F + V+E  S      RSI G+  VPA+ YPWVLLII Q+++PR+S +GHLSG+L G   SYG    L  S     ++E S   A   R P +++    ++  LP
Sbjct:   13 TRASQWWASIPAITGGTLILCVAIYIVDLLIGYDNFQQVCFSTDSVIGNFQVYRAITAVLFHASLLHVLFNMLALVPIGSSLERIMGSVRYLHVILLLAVSNAVIHILIAYIVAYNPIYVHKSVLMECQIGFSGILFAMIVIEG-SLYTGQNRSIFGLFNVPAKWYPWVLLIIFQMIMPRVSLLGHLSGILSGFAYSYGLFNVLMLSQATYTKIESSSLLASCMRRPGFIVGGGSANATLP 252          
The following BLAST results are available for this feature:
BLAST of EWM27033.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109207|gb|EWM27033.1|0.000e+0100.00Peptidase S54, rhomboid domain protein [Nannochlor... [more]
gi|224001444|ref|XP_002290394.1|3.365e-4640.69predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|299473184|emb|CBN78760.1|1.616e-4543.19conserved unknown protein [Ectocarpus siliculosus][more]
gi|219112025|ref|XP_002177764.1|9.821e-4141.70predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072230888|gb|OEU15621.1|1.623e-3940.47hypothetical protein FRACYDRAFT_159831, partial [F... [more]
gi|1210525254|dbj|GAX16013.1|1.994e-3435.53rhomboid domain-containing protein 1 [Fistulifera ... [more]
gi|1210529913|dbj|GAX11446.1|1.022e-3236.84hypothetical protein FisN_22Lh130 [Fistulifera sol... [more]
gi|397569632|gb|EJK46866.1|1.407e-3245.28hypothetical protein THAOC_34449 [Thalassiosira oc... [more]
gi|1191686161|gb|OTG38122.1|1.577e-3224.74putative RHOMBOID-like protein 15 [Helianthus annu... [more]
gi|302776366|ref|XP_002971354.1|1.742e-3234.02hypothetical protein SELMODRAFT_147697 [Selaginell... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3619rna3619Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications