EWM27033.1, cds3610 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|585109207|gb|EWM27033.1| (Peptidase S54, rhomboid domain protein [Nannochloropsis gaditana]) HSP 1 Score: 923.309 bits (2385), Expect = 0.000e+0 Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0
Query: 1 MLPLASQWRSRSSASPHRQKLSAGRGYSTLGPMQQQQPTRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVGSGVSGTAAGSAGVAGGAVGSLPSTVQNPPTATVAAGATNQASPTRLGGAGGWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQTTARVKFAEQKHIAREVEVGVMKVRSRRRNPTVGPHLTLTRRSGPTWCLLSGKRGTGLLSEWNQSTRPQ 451
MLPLASQWRSRSSASPHRQKLSAGRGYSTLGPMQQQQPTRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVGSGVSGTAAGSAGVAGGAVGSLPSTVQNPPTATVAAGATNQASPTRLGGAGGWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQTTARVKFAEQKHIAREVEVGVMKVRSRRRNPTVGPHLTLTRRSGPTWCLLSGKRGTGLLSEWNQSTRPQ
Sbjct: 1 MLPLASQWRSRSSASPHRQKLSAGRGYSTLGPMQQQQPTRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVGSGVSGTAAGSAGVAGGAVGSLPSTVQNPPTATVAAGATNQASPTRLGGAGGWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQTTARVKFAEQKHIAREVEVGVMKVRSRRRNPTVGPHLTLTRRSGPTWCLLSGKRGTGLLSEWNQSTRPQ 451
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|224001444|ref|XP_002290394.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973816|gb|EED92146.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 172.17 bits (435), Expect = 3.365e-46 Identity = 94/231 (40.69%), Postives = 141/231 (61.04%), Query Frame = 0
Query: 39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPD 269
+R ETL+ IPL T LC + L + ++ F++ V+Y +EYYR+ TS+ FH L HI MNM+S + IG LE R GT LT+LW +LT+ +Y+ L +++ ++ S GFSGVIF L+VLE++ + PN +RS+ GM QV ++ YPW LL+++Q ++P+ISF+GHLSG+L+G LQ +G +FPS L LE A +T P ++ P+
Sbjct: 2 SRASETLASIPLATLSIMALCCFVYLYQLAFDPTLHNFTMCPRLVLYMNEYYRIITSSLFHGSLMHIGMNMMSTMAIGTSLEKRFGTFTMALTVLWGVLLTSVIYMTTSWLLYVGFGYEKMMYQHSLGFSGVIFQLSVLEANLT-PNRSRSVFGMIQVSSKMYPWCLLVVLQFIMPQISFLGHLSGILLGTLQLHGADK-IFPSDAYLQDLETWSALEAITTKPGFVKMPE 230
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|299473184|emb|CBN78760.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 169.859 bits (429), Expect = 1.616e-45 Identity = 92/213 (43.19%), Postives = 128/213 (60.09%), Query Frame = 0
Query: 39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAA-VTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLE 250
L E ++PLCT LC+ILQ CV + N+ + + + ++Y EYYR+ T A H GL HI NM+SF+ IG+ LE+ GT+ TILWS IL ++ G + VT+ ++ S GFSGVIFTLA++ES+ S TRS+ GM +VP R YPWVLL+++ + + ISFVGHLSG+L+GV+ YG L PS +E
Sbjct: 4 NNLGEVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSSLEVAFGTLSLLFTILWSMILAGVVHCGAEWVMTVWVTHDPTYVNQPSVGFSGVIFTLALMESYRS-TQPTRSVFGMMRVPTRMYPWVLLVLLSVFMRDISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEME 215
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|219112025|ref|XP_002177764.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410649|gb|EEC50578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 157.147 bits (396), Expect = 9.821e-41 Identity = 98/235 (41.70%), Postives = 139/235 (59.15%), Query Frame = 0
Query: 39 TRLQETLSKIPLCTTLTTLLCLILQLCV-VILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESD 272
+R E L + P TT LC+IL + V+L N+ +F++ V+Y E YR+ TSA FH + H+AMNM++ + IG+ LE R GT L ILWS +LT LYIGI FLA + Q + S GFSGVIF L+VLES+ + +RS+ G VP+ YPWVLL+ +Q+ +P +SF GHL G+L+G LQ YG L ++ L R++ +TR Q+ CP ++
Sbjct: 2 SRFNELLQRTPQTTTGIIALCVILHVVTKVLLDLNLRIFTLCPQLVIYRLEIYRIATSALFHGNIMHLAMNMMTTLAIGSLLEKRFGTFRLLLIILWSILLTGILYIGIALFLAIIIQKNQLMRQHSVGFSGVIFHLSVLESNLG-THQSRSVFGFFDVPSYLYPWVLLVGLQIFMPGLSFTGHLVGILVGTLQLYGGLNWILWGEERLKRVDNWSRLDFLTR--QHNFCPTTAE 233
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|1072230888|gb|OEU15621.1| (hypothetical protein FRACYDRAFT_159831, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 151.369 bits (381), Expect = 1.623e-39 Identity = 87/215 (40.47%), Postives = 131/215 (60.93%), Query Frame = 0
Query: 40 RLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLA-FLFPSSGNLNRLERSP 253
R + L ++P T +C+ L + + + W++ LF++ +++ +EYYR+FTS +FH L HI MNMLS I LE R+GT+ ++I WS +LT+++YI I + + W++ S GFSG+IF L+VLES+ P RS+ G VP+ YPW LL+I+QL++P +SF+GHLSG+L G L+ YG FLF S L +E P
Sbjct: 2 RSTDALRQLPPATLGVITICVFLFIIQMTMTWDIQLFTMCPRLILFMNEYYRIFTSVFFHANLMHIGMNMLSTSTISTVLEKRIGTLRLIVSIWWSILLTSTIYIIIAYTAYIIFGYDTWMYQHSIGFSGIIFHLSVLESYLHP--GQRSVFGFFSVPSFVYPWALLLILQLIMPNLSFLGHLSGILTGSLEYYGVWDRFLFLSDSFLIEIESLP 214
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|1210525254|dbj|GAX16013.1| (rhomboid domain-containing protein 1 [Fistulifera solaris]) HSP 1 Score: 139.428 bits (350), Expect = 1.994e-34 Identity = 81/228 (35.53%), Postives = 124/228 (54.39%), Query Frame = 0
Query: 39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCL-AFLFPSSGNLNRLERSPAFACMTRCPQYM 265
+RL E + +P T C+++ C IL + F++ +V E YR+ T A+FH HIA+NMLS I + +E R+GT+Y + S ++ + +YI I + N+ +L + S GFSGV+F + VL+ SS + RS+ G+ +VP YP+ LL ++QL+LP ISF GHLSG++ G L S GC L L +E P +TR P ++
Sbjct: 2 SRLNEEVQLVPPSTLTVIAFCVVVYGCQTILNLPLQTFTLCPQRIVEHWEVYRILTHAFFHANFLHIALNMLSAFAISSAVEKRVGTVYHLFSTFMSIVMISMVYIAISLLFLVIGNNDLYLQH-SVGFSGVLFHMLVLDVTSS--SQPRSLFGIIEVPPLFYPFALLSVLQLILPNISFYGHLSGIVTGFLHSAGCFDGILMIDERRLQTMEEWPFVNILTRSPSFV 226
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|1210529913|dbj|GAX11446.1| (hypothetical protein FisN_22Lh130 [Fistulifera solaris]) HSP 1 Score: 134.806 bits (338), Expect = 1.022e-32 Identity = 84/228 (36.84%), Postives = 126/228 (55.26%), Query Frame = 0
Query: 39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCL-AFLFPSSGNLNRLERSPAFACMTRCPQYM 265
+RL E + +P T +C ++ C + + F++ +V E YR+ T A+FH HIA+NMLS I + +E R+GT Y L+ S ++ +YIGI A+ N+ +L +A GFSGV+F + VL+ SS + +RS+ GM +VP YP+ LL+++QL+LP ISF GHLSG+L G L S GC L L +E P +TR P ++
Sbjct: 2 SRLNEEMQLVPPSTLTVIAVCFVVYGCQTVFDLPLQTFTLCPQRIVKHWEVYRILTHAFFHANFLHIALNMLSAFAISSSVEKRVGTFYHLLSTFLSIVMIPMVYIGISLLFLAMGNNDLYLQHA-VGFSGVLFHMLVLDVTSS--SQSRSLFGMVEVPPLFYPFALLLVLQLILPNISFYGHLSGILTGFLHSAGCFDGILITDERRLQTMEEWPVVNVLTRSPSFV 226
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|397569632|gb|EJK46866.1| (hypothetical protein THAOC_34449 [Thalassiosira oceanica]) HSP 1 Score: 133.265 bits (334), Expect = 1.407e-32 Identity = 72/159 (45.28%), Postives = 101/159 (63.52%), Query Frame = 0
Query: 113 VGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDES 271
+ IG+ LE ++GT+ LTI + +LT ++YI I L AV ++ + +AGFSGVIF L+VLES+ SP N TRS+ G+ V +R YPW LL+ IQL++P ISF+GHLSG+LIG LQ +G L LFP L E S + + P Y+ P+ +
Sbjct: 1 MAIGSSLERQIGTIMMALTIFFGILLTGAIYISISWLLFAVFGLEKMMLQHAAGFSGVIFQLSVLESNLSP-NRTRSVFGVFTVSSRMYPWALLVAIQLVMPHISFLGHLSGILIGSLQYHGALNVLFPREEYLQECETSERLSVLRAQPSYVPTPEST 158
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|1191686161|gb|OTG38122.1| (putative RHOMBOID-like protein 15 [Helianthus annuus]) HSP 1 Score: 137.117 bits (344), Expect = 1.577e-32 Identity = 96/388 (24.74%), Postives = 179/388 (46.13%), Query Frame = 0
Query: 38 PTRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISY--AAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGT--MYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVGSGVSGTAAGSAGVAGGAVGSLP-----------STVQN---PPTATVAAGATNQASPTRLGGAGGWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQTTARVKFAEQKHIAREVEVGVMKVR 407
PTR ++ +P T++ +C + L +++G++ + + + +AV+ + YR+FTS FH + H+ NM++ V +G+ LE MG+ + + + +L +T L I + + V ++ ++ + GFSGV+F++ V+E+ S +RS+ G+ VPA+ YPW+LL++ QLL+ IS +GHL G+L G +YG F+ P S + +E + + R P+Y++C P ++ + + S +AG +L ST +N P + ++ PT + +RL +SG + A D Q+R +RQ + I + + +G K +
Sbjct: 12 PTRFKQWWEGMPFLTSVVVAVCTAIYLVCLLIGYD-SFLEVCFLPSAVISKFQVYRVFTSILFHGSILHLVFNMMALVPLGSELERVMGSIRLLYVIVLLATTSAIFHLLITLIAAFNPVYSYNHFMDECAIGFSGVLFSMIVIETSLSGVQ-SRSVFGLFNVPAKLYPWMLLVVFQLLMTNISLLGHLCGILSGFAYTYGLFNFIIPGSSFFSGIESASWLSTCVRRPKYIMC-----------------------TGGDPSGYIPTYTTRNTTSSESMAGNMWTNLSSWMPRREVLPQSTEENSRFPGRGRTLSAPQSETGPTNGNDSSLQARLLESGNSPVHPSSQEAIDAGQQRINRRQPGIEATVPSDEEIQKLLAMGFDKTQ 374
BLAST of EWM27033.1 vs. NCBI_GenBank
Match: gi|302776366|ref|XP_002971354.1| (hypothetical protein SELMODRAFT_147697 [Selaginella moellendorffii] >gi|300161336|gb|EFJ27952.1| hypothetical protein SELMODRAFT_147697 [Selaginella moellendorffii]) HSP 1 Score: 137.502 bits (345), Expect = 1.742e-32 Identity = 82/241 (34.02%), Postives = 128/241 (53.11%), Query Frame = 0
Query: 39 TRLQETLSKIPLCTTLTTLLCLILQLCVVILGW-NVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLA--AVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLP 276
TR + + IP T T +LC+ + + +++G+ N S +V+ + + YR T+ FH L H+ NML+ V IG+ LE MG++ + IL + ++I I +A + H+ L GFSG++F + V+E S RSI G+ VPA+ YPWVLLII Q+++PR+S +GHLSG+L G SYG L S ++E S A R P +++ ++ LP
Sbjct: 13 TRASQWWASIPAITGGTLILCVAIYIVDLLIGYDNFQQVCFSTDSVIGNFQVYRAITAVLFHASLLHVLFNMLALVPIGSSLERIMGSVRYLHVILLLAVSNAVIHILIAYIVAYNPIYVHKSVLMECQIGFSGILFAMIVIEG-SLYTGQNRSIFGLFNVPAKWYPWVLLIIFQMIMPRVSLLGHLSGILSGFAYSYGLFNVLMLSQATYTKIESSSLLASCMRRPGFIVGGGSANATLP 252 The following BLAST results are available for this feature:
BLAST of EWM27033.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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