rna3611, rna3611 (mRNA) Nannochloropsis gaditana

Overview
Namerna3611
Unique Namerna3611
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length591
Alignment locationCM002461.1:804339..805827 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100194g5.7126.mrna
Orig protein idgnl|cribi|Naga_100194g5.7126
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:804339..805827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100194g5gene3478Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3611rna3611-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27074.1cds3602Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3611 ID=rna3611|Name=rna3611|organism=Nannochloropsis gaditana|type=mRNA|length=591bp
ATGTCGTGTGGACACCCCGGGCGCCAGGGCCAGCAAAGCGAGCACCGGGG
ATTTCACACAGCAGCCGCCGGGAAGCCGCAAACTCCCATAGTAACGAAGA
CGAGGAGCGAACGCAACGCGTTGACCGGCTCGCAACAACGCATGTTCACC
TTACCCCTCCGACGCGGCGCCATATGGTCAATTTATCTTTTCGCCATTCC
AAAACAGTATTTTAAGAACAGTTCATTTGACTGCCGTAAATTGCAAGTCA
ATGGTTTTGATGAACAGTCGTGCACAGCTAAAAGAATTGTCGGCATGACC
AGGCTTCCGCATTGTGGCATTTATTTGATTGATTTGTACCTTATTCAGAC
AATAAACTTGCGACATCCAACTTGCGATGACTCTGAGGCTGCATGTAACA
GCGGAAGCAAAAAGAGGAATATTTTATGTTTAAACAAGATAGGGCCAACA
TCGAGGTGCGAGGTGTCAAGAAGCCGAGCAGTGGATTGTCTTTTCATAGA
AACGAATTCGTGCTCGCCAGAAGAGCTTCACGTCCGGCATGTCTGCTACC
AGACGGATTTTCGAAAGCACAAGATGCTCATACTGATTTGA
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protein sequence of rna3611

>rna3611-protein ID=rna3611-protein|Name=rna3611|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MPSHLVRVVMNETEPSRRRSDLLSPLPYAVILKSTARQPFPIRPMYTLSL
LAVISLLASMLLSEAFIVCTKPSPEVVVRRRTHSILFMSTDALEKAASSS
TVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFP
LLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKPEGEELIDV
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mRNA from alignment at CM002461.1:804339..805827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3611 ID=rna3611|Name=rna3611|organism=Nannochloropsis gaditana|type=mRNA|length=1489bp|location=Sequence derived from alignment at CM002461.1:804339..805827- (Nannochloropsis gaditana)
ATCTCAGTCTTTGTTCACAACCAGAACTTCTACGGAAAGGCGCGTCACAC
AAACAGACCTTGAACCTTAATATGTGATTCCCTGATAGTACTAAACAGCT
AGACATGCCTTCTCACCTAGTTCGTGTCGTCATGAATGAAACAGAGCCCA
GCCGGAGACGCTCCGACCTCCTCTCCCCCCTCCCCTACGCTGTGATACTA
AAGAGTACAGCACGTCAACCTTTCCCTATACGGCCCATGTATACGCTTTC
ATTGCTTGCGGTTATCTCATTGCTGGCTAGCATGCTGCTATCGGAGGCCT
TCATTGTTTGTACGAAGCCCTCTCCTGAAGTTGTCGTGAGAAGGAGAACG
CACTCCATCCTTTTCATGAGCACCGACGCCCTAGAAAAGGCCGCTTCCTC
TTCGACAGTGTCCAGTGACACCTCCTCGGCAGAATCAGACACTGTCATCA
AGTCTGCTGGTCCCTGCAAAAACTTTCCGAAGTGTGACGGGGCCTATTTA
AATAGAGGCTGCGGGGGCACCGGCAAAATCCAGGGGGGTATCGCAACCTT
TCCTCTTCTAGGGTGGTGGCCAATCAAGGTATGTAAATGTGCTTGGCCGA
GGATGGTTTACTTTTCAATTGCCAAACCGACTCTTTCGAGAGGAAGGGGG
AGGACAGACTACATGTGTTCTAAACACCTTTTATGACGGTTCTCTTCCTT
TTTAACCTCTCTATCGCTTTCGATGTGGTTCCTCACGATTCTTCAACATC
TTTCCCCTTTTTATGCTTCTGATAACACGACACATTGATCTCCAGGCGTA
CCGTCCATGTCCCTCTGCGACAGAGGCGGGCTATGGCTACAAGCGGAAGG
GACAAGATTTCTCCGAATTCATTGCTGGAGAGCGGCGGAAGAAGCCGGAA
GGGGAAGAACTAATCGATGTTTAGAAATGGGACAGTAGAATCACGCAATG
TTGTGGGTCGTGCGTGAATGACTTGCCATTTTTGGTGGCATAAGGACGTT
GGACGAGGACGTCAGTGAAGATGCTGGGACGATGAGAGAAATTGAATTTT
CAGGACGAAGGTTGTCATTCGTGTCCTACCTTCCGTTTCTTTTGTTTTTG
TTGACTCTCTTTACCACTTCACCTTTGATTTGACGAGGAGTACAGTAAGC
GACTTTGTGCTGCGAGTGAATGGCATGACGAGACGGCAAGATGAGGCTTG
AAACAAGACAGTGGGTCCCGTGTTTGTCAAATCAGTATGAGCATCTTGTG
CTTTCGAAAATCCGTCTGGTAGCAGACATGCCGGACGTGAAGCTCTTCTG
GCGAGCACGAATTCGTTTCTATGAAAAGACAATCCACTGCTCGGCTTCTT
GACACCTCGCACCTCGATGTTGGCCCTATCTTGTTTAAACATAAAATATT
CCTCTTTTTGCTTCCGCTGTTACATGCAGCCTCAGAGTCATCGCAAGTTG
GATGTCGCAAGTTTATTGTCTGAATAAGGTACAAATCAA
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Coding sequence (CDS) from alignment at CM002461.1:804339..805827-

>rna3611 ID=rna3611|Name=rna3611|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002461.1:804339..805827- (Nannochloropsis gaditana)
GCGTACCGTCCATGTCCCTCTGCGACAGAGGCGGGCTATGGCTACAAGCG
GAAGGGACAAGATTTCTCCGAATTCATTGCTGGAGAGCGGCGGAAGAAGC
CGGAAGGGGAAGAACTAATCGATGTTTAGATGCCTTCTCACCTAGTTCGT
GTCGTCATGAATGAAACAGAGCCCAGCCGGAGACGCTCCGACCTCCTCTC
CCCCCTCCCCTACGCTGTGATACTAAAGAGTACAGCACGTCAACCTTTCC
CTATACGGCCCATGTATACGCTTTCATTGCTTGCGGTTATCTCATTGCTG
GCTAGCATGCTGCTATCGGAGGCCTTCATTGTTTGTACGAAGCCCTCTCC
TGAAGTTGTCGTGAGAAGGAGAACGCACTCCATCCTTTTCATGAGCACCG
ACGCCCTAGAAAAGGCCGCTTCCTCTTCGACAGTGTCCAGTGACACCTCC
TCGGCAGAATCAGACACTGTCATCAAGTCTGCTGGTCCCTGCAAAAACTT
TCCGAAGTGTGACGGGGCCTATTTAAATAGAGGCTGCGGGGGCACCGGCA
AAATCCAGGGGGGTATCGCAACCTTTCCTCTTCTAGGGTGGTGGCCAATC
AAGGCGTACCGTCCATGTCCCTCTGCGACAGAGGCGGGCTATGGCTACAA
GCGGAAGGGACAAGATTTCTCCGAATTCATTGCTGGAGAGCGGCGGAAGA
AGCCGGAAGGGGAAGAACTAATCGATGTTTAGATGCCTTCTCACCTAGTT
CGTGTCGTCATGAATGAAACAGAGCCCAGCCGGAGACGCTCCGACCTCCT
CTCCCCCCTCCCCTACGCTGTGATACTAAAGAGTACAGCACGTCAACCTT
TCCCTATACGGCCCATGTATACGCTTTCATTGCTTGCGGTTATCTCATTG
CTGGCTAGCATGCTGCTATCGGAGGCCTTCATTGTTTGTACGAAGCCCTC
TCCTGAAGTTGTCGTGAGAAGGAGAACGCACTCCATCCTTTTCATGAGCA
CCGACGCCCTAGAAAAGGCCGCTTCCTCTTCGACAGTGTCCAGTGACACC
TCCTCGGCAGAATCAGACACTGTCATCAAGTCTGCTGGTCCCTGCAAAAA
CTTTCCGAAGTGTGACGGGGCCTATTTAAATAGAGGCTGCGGGGGCACCG
GCAAAATCCAGGGGGGTATCGCAACCTTTCCTCTTCTAGGGTGGTGGCCA
ATCAAG
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Synonyms
Publications