EWM27074.1, cds3602 (CDS) Nannochloropsis gaditana

Overview
NameEWM27074.1
Unique Namecds3602
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:805250..805723 -
Alignment locationCM002461.1:804904..805032 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27074.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100194g5.7126.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:805250..805723 -
CM002461.1supercontigCM002461.1:804904..805032 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR028307Lin-54_fam
Homology
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|585109249|gb|EWM27074.1| (hypothetical protein Naga_100194g5 [Nannochloropsis gaditana])

HSP 1 Score: 410.609 bits (1054), Expect = 4.922e-145
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:    1 MPSHLVRVVMNETEPSRRRSDLLSPLPYAVILKSTARQPFPIRPMYTLSLLAVISLLASMLLSEAFIVCTKPSPEVVVRRRTHSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKPEGEELIDV 200
            MPSHLVRVVMNETEPSRRRSDLLSPLPYAVILKSTARQPFPIRPMYTLSLLAVISLLASMLLSEAFIVCTKPSPEVVVRRRTHSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKPEGEELIDV
Sbjct:    1 MPSHLVRVVMNETEPSRRRSDLLSPLPYAVILKSTARQPFPIRPMYTLSLLAVISLLASMLLSEAFIVCTKPSPEVVVRRRTHSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKPEGEELIDV 200          
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|1108918890|ref|XP_019104944.1| (PREDICTED: uncharacterized protein LOC109134980 [Beta vulgaris subsp. vulgaris] >gi|870860581|gb|KMT11889.1| hypothetical protein BVRB_5g098570 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 87.0409 bits (214), Expect = 3.361e-18
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 0
Query:  110 ESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKP 192
            +S +V++S     NF  C       +  GC G G+IQGGIATFP LGWWPIKAYRPCP    +G  Y+R+GQ   E   G  R +P
Sbjct:   58 DSSSVVQSVNNDNNFSGCKACGREQIEGGCNGEGRIQGGIATFPGLGWWPIKAYRPCPGFLASGGNYRRRGQSMDEVAFGGGRGRP 143          
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|470125871|ref|XP_004298921.1| (PREDICTED: uncharacterized protein LOC101295130 [Fragaria vesca subsp. vesca])

HSP 1 Score: 84.7297 bits (208), Expect = 1.592e-17
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 0
Query:   84 SILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAG 186
            +IL  ST +      ++    D+ +A+S++ IK   P      C    + +GC G G IQGGIATFP  GWWPIKAYRPCP   E+G  Y+R+GQ   E   G
Sbjct:   42 TILLCSTSSSSVVEDTTLPPDDSLAAKSESSIKEP-PFSACKSCGREEMEKGCNGEGSIQGGIATFPGFGWWPIKAYRPCPGFLESGGRYRRQGQSLDEVAFG 143          
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|222618058|gb|EEE54190.1| (hypothetical protein OsJ_01022 [Oryza sativa Japonica Group])

HSP 1 Score: 85.1149 bits (209), Expect = 2.238e-17
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 0
Query:   94 EKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKK 191
            ++A ++++ S +   A S+T   S     NF  C G+    + RGC G G+IQGGIAT P  GWWPIKAYRPCP    +G  Y+R+GQ      +G+ +K+
Sbjct:   64 QEAVAAASSSQEEGVAVSETEFVSYRDDPNFRGCKGSGREEVERGCNGKGRIQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDNLASGKGKKR 164          
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|1023300896|ref|NP_001311170.1| (uncharacterized LOC103649536 [Zea mays] >gi|195610174|gb|ACG26917.1| hypothetical protein [Zea mays])

HSP 1 Score: 84.7297 bits (208), Expect = 2.573e-17
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 0
Query:   81 RTHSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKP 192
            R + +L  ++ A   ++   T   +  S E +       P  NF  C G     L RGC G G+IQGGIA  P  GWWPIKAYRPCP    +G  Y+R+GQ   +  +G  +KKP
Sbjct:   38 RGNRLLCTASGASSSSSVVVTKEQEEGSPEPEIFSYKDDP--NFRGCKGCGRDELQRGCNGQGRIQGGIAAVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKKP 150          
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|1130826697|dbj|GAV88780.1| (hypothetical protein CFOL_v3_32201 [Cephalotus follicularis])

HSP 1 Score: 84.3445 bits (207), Expect = 4.697e-17
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 0
Query:   86 LFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSE--FIAGERR 189
            L  ST  ++  +SSS     + S   DT       CK    C    L RGC G G+IQGGIAT P  GWWPIKAYRPCP    +G  Y+R+GQ   +  F  GE+R
Sbjct:   48 LCSSTSIVDNVSSSSPPDVQSESVIQDTDQLPLSVCK---ACGREELERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGLVASGGRYRRRGQSMDDIGFGGGEKR 150          
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|195615298|gb|ACG29479.1| (hypothetical protein [Zea mays])

HSP 1 Score: 83.5741 bits (205), Expect = 4.948e-17
Identity = 44/100 (44.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query:   96 AASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKP 192
            A+SS  V+ +      +  I S     NF  C G     L RGC G G+IQGGIA  P  GWWPIKAYRPCP    +G  Y+R+GQ   +  +G  +KKP
Sbjct:   46 ASSSVVVTKEQEEGSPEPEIFSYKDDPNFRGCKGCGRDELQRGCNGQGRIQGGIAAVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKKP 145          
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|56783848|dbj|BAD81260.1| (unknown protein [Oryza sativa Japonica Group] >gi|56783951|dbj|BAD81388.1| unknown protein [Oryza sativa Japonica Group])

HSP 1 Score: 85.5001 bits (210), Expect = 5.122e-17
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   94 EKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKK 191
            ++A ++++ S +   A S+T   S     NF  C G     + RGC G G+IQGGIAT P  GWWPIKAYRPCP    +G  Y+R+GQ   +  +G  +K+
Sbjct:   64 QEAVAAASSSQEEGVAVSETEFVSYRDDPNFRGCRGCGREEVERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKR 164          
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|1002227421|ref|XP_015631916.1| (PREDICTED: uncharacterized protein LOC4327776 [Oryza sativa Japonica Group] >gi|937895233|dbj|BAS71213.1| Os01g0235100 [Oryza sativa Japonica Group])

HSP 1 Score: 84.3445 bits (207), Expect = 5.210e-17
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   96 AASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKP 192
            AA+SS+     + +E++ V     P  NF  C G     + RGC G G+IQGGIAT P  GWWPIKAYRPCP    +G  Y+R+GQ   +  +G  +K P
Sbjct:   68 AAASSSQEEGVAVSETEFVSYRDDP--NFRGCRGCGREEVERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKVP 165          
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|255673036|dbj|BAF04433.2| (Os01g0235100 [Oryza sativa Japonica Group])

HSP 1 Score: 84.3445 bits (207), Expect = 5.386e-17
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   94 EKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKK 191
            ++A ++++ S +   A S+T   S     NF  C G     + RGC G G+IQGGIAT P  GWWPIKAYRPCP    +G  Y+R+GQ   +  +G  +K+
Sbjct:   64 QEAVAAASSSQEEGVAVSETEFVSYRDDPNFRGCRGCGREEVERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKR 164          
The following BLAST results are available for this feature:
BLAST of EWM27074.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109249|gb|EWM27074.1|4.922e-145100.00hypothetical protein Naga_100194g5 [Nannochloropsi... [more]
gi|1108918890|ref|XP_019104944.1|3.361e-1847.67PREDICTED: uncharacterized protein LOC109134980 [B... [more]
gi|470125871|ref|XP_004298921.1|1.592e-1742.72PREDICTED: uncharacterized protein LOC101295130 [F... [more]
gi|222618058|gb|EEE54190.1|2.238e-1741.58hypothetical protein OsJ_01022 [Oryza sativa Japon... [more]
gi|1023300896|ref|NP_001311170.1|2.573e-1739.13uncharacterized LOC103649536 [Zea mays] >gi|195610... [more]
gi|1130826697|dbj|GAV88780.1|4.697e-1744.34hypothetical protein CFOL_v3_32201 [Cephalotus fol... [more]
gi|195615298|gb|ACG29479.1|4.948e-1744.00hypothetical protein [Zea mays][more]
gi|56783848|dbj|BAD81260.1|5.122e-1741.58unknown protein [Oryza sativa Japonica Group] >gi|... [more]
gi|1002227421|ref|XP_015631916.1|5.210e-1744.00PREDICTED: uncharacterized protein LOC4327776 [Ory... [more]
gi|255673036|dbj|BAF04433.2|5.386e-1741.58Os01g0235100 [Oryza sativa Japonica Group][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3611rna3611Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications