EWM27074.1, cds3602 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|585109249|gb|EWM27074.1| (hypothetical protein Naga_100194g5 [Nannochloropsis gaditana]) HSP 1 Score: 410.609 bits (1054), Expect = 4.922e-145 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query: 1 MPSHLVRVVMNETEPSRRRSDLLSPLPYAVILKSTARQPFPIRPMYTLSLLAVISLLASMLLSEAFIVCTKPSPEVVVRRRTHSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKPEGEELIDV 200
MPSHLVRVVMNETEPSRRRSDLLSPLPYAVILKSTARQPFPIRPMYTLSLLAVISLLASMLLSEAFIVCTKPSPEVVVRRRTHSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKPEGEELIDV
Sbjct: 1 MPSHLVRVVMNETEPSRRRSDLLSPLPYAVILKSTARQPFPIRPMYTLSLLAVISLLASMLLSEAFIVCTKPSPEVVVRRRTHSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKPEGEELIDV 200
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|1108918890|ref|XP_019104944.1| (PREDICTED: uncharacterized protein LOC109134980 [Beta vulgaris subsp. vulgaris] >gi|870860581|gb|KMT11889.1| hypothetical protein BVRB_5g098570 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 87.0409 bits (214), Expect = 3.361e-18 Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 0
Query: 110 ESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKP 192
+S +V++S NF C + GC G G+IQGGIATFP LGWWPIKAYRPCP +G Y+R+GQ E G R +P
Sbjct: 58 DSSSVVQSVNNDNNFSGCKACGREQIEGGCNGEGRIQGGIATFPGLGWWPIKAYRPCPGFLASGGNYRRRGQSMDEVAFGGGRGRP 143
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|470125871|ref|XP_004298921.1| (PREDICTED: uncharacterized protein LOC101295130 [Fragaria vesca subsp. vesca]) HSP 1 Score: 84.7297 bits (208), Expect = 1.592e-17 Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 0
Query: 84 SILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAG 186
+IL ST + ++ D+ +A+S++ IK P C + +GC G G IQGGIATFP GWWPIKAYRPCP E+G Y+R+GQ E G
Sbjct: 42 TILLCSTSSSSVVEDTTLPPDDSLAAKSESSIKEP-PFSACKSCGREEMEKGCNGEGSIQGGIATFPGFGWWPIKAYRPCPGFLESGGRYRRQGQSLDEVAFG 143
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|222618058|gb|EEE54190.1| (hypothetical protein OsJ_01022 [Oryza sativa Japonica Group]) HSP 1 Score: 85.1149 bits (209), Expect = 2.238e-17 Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 0
Query: 94 EKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKK 191
++A ++++ S + A S+T S NF C G+ + RGC G G+IQGGIAT P GWWPIKAYRPCP +G Y+R+GQ +G+ +K+
Sbjct: 64 QEAVAAASSSQEEGVAVSETEFVSYRDDPNFRGCKGSGREEVERGCNGKGRIQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDNLASGKGKKR 164
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|1023300896|ref|NP_001311170.1| (uncharacterized LOC103649536 [Zea mays] >gi|195610174|gb|ACG26917.1| hypothetical protein [Zea mays]) HSP 1 Score: 84.7297 bits (208), Expect = 2.573e-17 Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 0
Query: 81 RTHSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKP 192
R + +L ++ A ++ T + S E + P NF C G L RGC G G+IQGGIA P GWWPIKAYRPCP +G Y+R+GQ + +G +KKP
Sbjct: 38 RGNRLLCTASGASSSSSVVVTKEQEEGSPEPEIFSYKDDP--NFRGCKGCGRDELQRGCNGQGRIQGGIAAVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKKP 150
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|1130826697|dbj|GAV88780.1| (hypothetical protein CFOL_v3_32201 [Cephalotus follicularis]) HSP 1 Score: 84.3445 bits (207), Expect = 4.697e-17 Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 0
Query: 86 LFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSE--FIAGERR 189
L ST ++ +SSS + S DT CK C L RGC G G+IQGGIAT P GWWPIKAYRPCP +G Y+R+GQ + F GE+R
Sbjct: 48 LCSSTSIVDNVSSSSPPDVQSESVIQDTDQLPLSVCK---ACGREELERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGLVASGGRYRRRGQSMDDIGFGGGEKR 150
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|195615298|gb|ACG29479.1| (hypothetical protein [Zea mays]) HSP 1 Score: 83.5741 bits (205), Expect = 4.948e-17 Identity = 44/100 (44.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query: 96 AASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKP 192
A+SS V+ + + I S NF C G L RGC G G+IQGGIA P GWWPIKAYRPCP +G Y+R+GQ + +G +KKP
Sbjct: 46 ASSSVVVTKEQEEGSPEPEIFSYKDDPNFRGCKGCGRDELQRGCNGQGRIQGGIAAVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKKP 145
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|56783848|dbj|BAD81260.1| (unknown protein [Oryza sativa Japonica Group] >gi|56783951|dbj|BAD81388.1| unknown protein [Oryza sativa Japonica Group]) HSP 1 Score: 85.5001 bits (210), Expect = 5.122e-17 Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0
Query: 94 EKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKK 191
++A ++++ S + A S+T S NF C G + RGC G G+IQGGIAT P GWWPIKAYRPCP +G Y+R+GQ + +G +K+
Sbjct: 64 QEAVAAASSSQEEGVAVSETEFVSYRDDPNFRGCRGCGREEVERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKR 164
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|1002227421|ref|XP_015631916.1| (PREDICTED: uncharacterized protein LOC4327776 [Oryza sativa Japonica Group] >gi|937895233|dbj|BAS71213.1| Os01g0235100 [Oryza sativa Japonica Group]) HSP 1 Score: 84.3445 bits (207), Expect = 5.210e-17 Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query: 96 AASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKP 192
AA+SS+ + +E++ V P NF C G + RGC G G+IQGGIAT P GWWPIKAYRPCP +G Y+R+GQ + +G +K P
Sbjct: 68 AAASSSQEEGVAVSETEFVSYRDDP--NFRGCRGCGREEVERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKVP 165
BLAST of EWM27074.1 vs. NCBI_GenBank
Match: gi|255673036|dbj|BAF04433.2| (Os01g0235100 [Oryza sativa Japonica Group]) HSP 1 Score: 84.3445 bits (207), Expect = 5.386e-17 Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0
Query: 94 EKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGA---YLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKK 191
++A ++++ S + A S+T S NF C G + RGC G G+IQGGIAT P GWWPIKAYRPCP +G Y+R+GQ + +G +K+
Sbjct: 64 QEAVAAASSSQEEGVAVSETEFVSYRDDPNFRGCRGCGREEVERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDDVASGRGKKR 164 The following BLAST results are available for this feature:
BLAST of EWM27074.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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