rna3610, rna3610 (mRNA) Nannochloropsis gaditana

Overview
Namerna3610
Unique Namerna3610
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1383
Alignment locationCM002461.1:803859..804601 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100194g6.7124.mrna
Orig protein idgnl|cribi|Naga_100194g6.7124
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:803859..804601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100194g6gene3477Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3610rna3610-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27072.1cds3601Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3610 ID=rna3610|Name=rna3610|organism=Nannochloropsis gaditana|type=mRNA|length=1383bp
TCTCGTGCCACCGCCGTGTAGCTGGCGTCACGAACAGAAACATCACACAC
CAAACCATGCTCCAAAGTGTGCCACATCACGCGCCTAATCTTTTCTCGTG
CCTCTCCTTGCCTACAGTAGCATGGTGGTGCCCCTGGACCGCATGCAAGC
CACCGACTTGAAAGCAGCGGGCGCCCCGGCCCCCGCCCAACCTAGGAGGA
CGTGCACTGCTTGTAAAGCAAGCAAGGTCAAATGCGATCGGCAAGCCCCC
GTTTGTGGCAGATGCGCCCGCCTCCGGCTGACATGCGTCCAGCAACCACG
TGCCCAAGGGCGCCCCATGAAGTCGAAGTCTTCGGAGAGCGAGGGCATTA
TCAGTCCCGAAGGAATGATAGAAAGCACCCTAGCCACGCGGGAGGCCACT
CCGGCACGCGCCGTATCAAGCGAAACGTCCACCCAGTGGGCCGCGGACTA
CATGGCCTTTACATTCTCCAACCTGCTCAAGTCCGGCGCAGTCCATCGCA
TGAAAACCTTCGCTGTGCTGCGCGTCTGGATGCTGTTCAGCATGTACTAC
GGCGTCGACCTGACCCGGGGCTTCCTCTCTGTGGCCTTGGCCTTGATGGA
TGCCTCCATCCAAGACCTCCAGCGTCTTCCCGAGACAATGGCCAGTAGCG
TAGCCCTCCCCCCTGATCAACCCGCCGCCGAGGCCGCCTCCATCACCTCC
TCCACCTCCTCTTCCTCTTCCTCCTCCTCCACCCCCGTCTCCTCGGTAGA
TGCCGCCGCCTCCGCTCCCCTCGACCCCGGCGTCCTCCAGCCTTTCATCG
CCTCTTTAGACGACGGCGTATCTGCGGTTATTTGCTGCGTGGGCTGTCGC
GGGGGCACCGGCAAGGTTTACTGCAACGACAAGTTCAAATCCACCTTCTT
CTCCTCGGAGGACCTGACCCAAAGGACGCTGAGCGAGAGCACCCTCCCCG
TCTACGTTTACGCCTGCATCATTGCGCCGGAAGACCGGGCCGAGTTTGTG
GACTCGCTGACGAACGTCTGCTTCGGGACCCAGACGGCGCTCCCGCAGGT
GACGCACATCGTCAAGGTACTGGACAGGCAAGGGAGCGACTTCCTCGCCA
TCGTCCGCCTGCGTTGCTTGACGCTCAACAACGGGGACTACGGCGCAGAT
ATTTTGACGGTGGAGCCCGCGCCCATGTCCAAGTACGTGTTGCAGACCAG
CGACGGGGCTGGGACGGGGCAGGAAGGGCCGGGGGGGGAGGGGGGGAGGG
AAGGGTGAGCGGAGACGTGTCGGTAACGTCGTCGGCGGAAGGGGAGGGCT
CCTCCGATGGCACTGGCCACGAGAGCATGGAGTCGCCGCGTTGGAAGAGG
GATGCGGGACAGAAAGGAGCGAGGGAGGGGGAG
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protein sequence of rna3610

>rna3610-protein ID=rna3610-protein|Name=rna3610|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MSCGHPGRQGQQSEHRGFHTAAAGKPQTPIVTKTRSERNALTGSQQRMFT
LPLRRGAIWSIYLFAIPKQYFKNSSFDCRKLQVNGFDEQSCTAKRIVGMT
RLPHCGIYLIDLYLIQTINLRHPTCDDSEAACNSGSKKRNILCLNKIGPT
SRCEVSRSRAVDCLFIETNSCSPEELHVRHVCYQTDFRKHKMLILI
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mRNA from alignment at CM002461.1:803859..804601+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3610 ID=rna3610|Name=rna3610|organism=Nannochloropsis gaditana|type=mRNA|length=743bp|location=Sequence derived from alignment at CM002461.1:803859..804601+ (Nannochloropsis gaditana)
ATGTCGTGTGGACACCCCGGGCGCCAGGGCCAGCAAAGCGAGCACCGGGG
ATTTCACACAGCAGCCGCCGGGAAGCCGCAAACTCCCATAGTaacgaaga
cgaggagcgaACGCAACGCGTTGACCGGCTCGCAACAACGCATGTTCACC
TTGTGCATACACTGCCACCAATCTTGCTTGCTTCCTACTCGACTATTTTC
TCGGAGCACTGCCTAACATTACAAGTGGCCCTTTTCGACCACTTGTGCGT
TGTTCTTGAAATGATGTTAACTTGATTTTTTACCCCTCACTTCGTTTCTT
TCAGACCCCTCCGACGCGGCGCCATATGGTCAATTTATCTTTTCGCCATT
CCAAAACAGTATTTTAAGAACAGTTCATTTGACTGCCGTAAATTGCAAGT
CAATGGTTTTGATGAACAGTCGTGCACAGCTAAAAGAATTGTCGGCATGA
CCAGGCTTCCGCATTGTGGCATTTATTTGATTGATTTGTACCTTATTCAG
ACAATAAACTTGCGACATCCAACTTGCGATGACTCTGAGGCTGCATGTAA
CAGCGGAAGCAAAAAGAGGAATATTTTATGTTTAAACAAGATAGGGCCAA
CATCGAGGTGCGAGGTGTCAAGAAGCCGAGCAGTGGATTGTCTTTTCATA
GAAACGAATTCGTGCTCGCCAGAAGAGCTTCACGTCCGGCATGTCTGCTA
CCAGACGGATTTTCGAAAGCACAAGATGCTCATACTGATTTGA
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Coding sequence (CDS) from alignment at CM002461.1:803859..804601+

>rna3610 ID=rna3610|Name=rna3610|organism=Nannochloropsis gaditana|type=CDS|length=1182bp|location=Sequence derived from alignment at CM002461.1:803859..804601+ (Nannochloropsis gaditana)
ATGTCGTGTGGACACCCCGGGCGCCAGGGCCAGCAAAGCGAGCACCGGGG
ATTTCACACAGCAGCCGCCGGGAAGCCGCAAACTCCCATAGTaacgaaga
cgaggagcgaACGCAACGCGTTGACCGGCTCGCAACAACGCATGTTCACC
TTACCCCTCCGACGCGGCGCCATATGGTCAATTTATCTTTTCGCCATTCC
AAAACAGTATTTTAAGAACAGTTCATTTGACTGCCGTAAATTGCAAGTCA
ATGGTTTTGATGAACAGTCGTGCACAGCTAAAAGAATTGTCGGCATGACC
AGGCTTCCGCATTGTGGCATTTATTTGATTGATTTGTACCTTATTCAGAC
AATAAACTTGCGACATCCAACTTGCGATGACTCTGAGGCTGCATGTAACA
GCGGAAGCAAAAAGAGGAATATTTTATGTTTAAACAAGATAGGGCCAACA
TCGAGGTGCGAGGTGTCAAGAAGCCGAGCAGTGGATTGTCTTTTCATAGA
AACGAATTCGTGCTCGCCAGAAGAGCTTCACGTCCGGCATGTCTGCTACC
AGACGGATTTTCGAAAGCACAAGATGCTCATACTGATTTGAATGTCGTGT
GGACACCCCGGGCGCCAGGGCCAGCAAAGCGAGCACCGGGGATTTCACAC
AGCAGCCGCCGGGAAGCCGCAAACTCCCATAGTaacgaagacgaggagcg
aACGCAACGCGTTGACCGGCTCGCAACAACGCATGTTCACCTTACCCCTC
CGACGCGGCGCCATATGGTCAATTTATCTTTTCGCCATTCCAAAACAGTA
TTTTAAGAACAGTTCATTTGACTGCCGTAAATTGCAAGTCAATGGTTTTG
ATGAACAGTCGTGCACAGCTAAAAGAATTGTCGGCATGACCAGGCTTCCG
CATTGTGGCATTTATTTGATTGATTTGTACCTTATTCAGACAATAAACTT
GCGACATCCAACTTGCGATGACTCTGAGGCTGCATGTAACAGCGGAAGCA
AAAAGAGGAATATTTTATGTTTAAACAAGATAGGGCCAACATCGAGGTGC
GAGGTGTCAAGAAGCCGAGCAGTGGATTGTCTTTTCATAGAAACGAATTC
GTGCTCGCCAGAAGAGCTTCACGTCCGGCATGTCTGCTACCAGACGGATT
TTCGAAAGCACAAGATGCTCATACTGATTTGA
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Synonyms
Publications