rna3604, rna3604 (mRNA) Nannochloropsis gaditana

Overview
Namerna3604
Unique Namerna3604
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1364
Alignment locationCM002461.1:794079..795013 -

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Properties
Property NameValue
Product30s ribosomal protein s17
Orig transcript idgnl|cribi|Naga_100194g13.7127.mrna
Orig protein idgnl|cribi|Naga_100194g13.7127
GenerpsQ
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:794079..795013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
rpsQgene3471Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3604rna3604-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27075.1cds3595Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3604 ID=rna3604|Name=rna3604|organism=Nannochloropsis gaditana|type=mRNA|length=1364bp
GTAACAAACCAAGGCAATCATGCGATGAATCGATACGAAGTACATGATAT
CATCAAGCAAAGTGAGATATTGTGGTAAGATTTTTCAGTCGTGTGTCCTT
TTGGCACTTCCACATCCATCTTACAGGGCCATTACCTGTATGAGGAAAAA
ACCTTCCCTTCCCTTTCTTTCTATTCTCCTTCTCCTCGCCGCCCACTGCA
CCACTACTGATCACGTAGAAGGTTGTATAAAGGTGGCAAACATTGCTTCA
ACGGTTCGTAACCATCGGCTCCGTGCCTTTGTTTCGCCCAGAAGGGTGTT
GCCCCACGTGCGGGCAGTCTTGTCAAGAAAAAGCTATGGTGTCGGAGCAG
GAGCTCCTTGCACCAGCACCTCTCGATATTGTACGAGCTCGACCGATCAC
ACCGAAGAAGATATGCCTCGACGAGTTCCAAATAAAATCATGCCAGGAAC
CATATATTTTGTATCCACTCCGCTGGGCAACCTAGGAGACATAACCTTGC
GGGCACTCGACGTGCTGCGAGGTGTTGATTTGATTGCTTCTGAAGACACA
CGGACCACAGGGCTCTTGCTCAAAGCGCTTGGTTTGGGAAAGAAGCCTCA
AGTAAGCCACCATCAACATAACATACAAAGCCGCGTGCCCGACCTGATCA
GGCGGGCTCAAGAGGAGAGGCTTTCCATCGCCGTGGTTTCTGACGCGGGG
ACTCCAGGGGTCTCCGACCCAGGAAGTGAGCTAGCGGCTGCCTGTTGGAC
TGCAGGCGTTCCTCTTGTCCCCGTCCCGGGGGCTTGTGCGGCTGTGGCGG
CGATAAGTGTTGCGGGCTTCCCCTCCACTGAGTTCACATTCATCGGCTTT
CTCCCCTCGAGAAGCGGGAAAGTTCGTCAAGCAGAAGTGGCCAAAGCGGC
AAGGGAGGAACGGCCTTGCATCCTGTACGAATCACCGAACCGCATCCTCC
GGACATTGACGGAATTGAGGGAGGCGGACGAGACGGGGGGTGGGCGCCTG
GTCCTAGTCGCCCGCGAGCTGACCAAGCTCCACGAAGACCTCTACCGTGG
CACCCTGACGGAGGCCTTGGCCCATTTCGGAGGCAAGGAAGAGCAAGGGG
TATCCGTGGAGGCGGGCGCTTTCGCACCTCTCCGGGGGGAGTTCACCTTG
GTGCTGGGGCCTCGGCCTCGGGTGGCGCGCTCCCAGGAAGAAGTGAGCAT
CGCCGTGCAGGCGATGCTTAGGGCCTGCCTGGAGGAGGACGGCATGTCCG
CGTCCGAGGCGGCCAAGGCGGCCAGCAAGACCCTGGGGAAGGAGGCCGGG
CTCGCAAAGTCGGACATGTACAAACTTGCTGTCGAAATGAAAAAGCCCCG
AAGCTGACCTCGCC
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protein sequence of rna3604

>rna3604-protein ID=rna3604-protein|Name=rna3604|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MLGHAGLGLRRWVGNAVKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDG
SSSLVFPDCNRASLRHHHHHGSPLMAFSRGFSTPRESPAADLDVPAESIQ
GEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIK
KIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI
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mRNA from alignment at CM002461.1:794079..795013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3604 ID=rna3604|Name=rna3604|organism=Nannochloropsis gaditana|type=mRNA|length=935bp|location=Sequence derived from alignment at CM002461.1:794079..795013- (Nannochloropsis gaditana)
CAGGCTCTGCTTGATTAAATGAACATTTCTCCATCAAACAAATTGTTATA
CATCACAGGCATTTACCATGCTTGGACACGCGGGCCTAGGCCTCCGTCGT
TGGGTCGGCAATGCGGTCAAATTTACAACAAAGCCTGATGCTATTAGCTT
TCCTCCATGCCGCACCCTCACTTGCACCAGCAGAAGCCTCGCCGCCTTCG
TGTCCACCTTTGACGGAAGCAGTTCCCTCGTTTTTCCCGATTGTAATCGA
GCTTCATTGCGACATCACCATCACCATGGCAGTCCCTTGATGGCCTTCTC
AAGAGGGTTTTCCACCCCCCGAGAGAGCCCTGCCGCCGATCTCGACGTCC
CTGCAGAAAGTATTCAAGGGGAAGATGAAGTGCTGGAAAATCCCAAGCCT
CCCCGTAACTCCTTGGTGGGTGTGGTTATCTCGGACAAGATGGATAAGTC
GATAGTTGTCAAGGTAAGGGAGAACGTCGGAGGAAAAGGAGCAGGCCATG
GGTGGCGGAGAAAGGACTTGGGAGTTGAGTTGAGAAGACCTGATAGCTAC
TGTACCCATCGCGCTCAAACTTGGCTTATGATTCTTTTCCTTTGTGCTAC
AACCCGTCTTTATGCAGGTGTCACGGCTCAAACTTTATTTGCCGTATATG
GTACGGAAGAAGGCAATTAAAAAAATCATGGCTCATGACGAGGAGAATGA
GTGTGGGATGGGTGACACGGTGCGTATCAAGCCCTCGCGGCCGTTGAGCA
AGAGAAAGCGATTTGTCTTGCACGAGGTGATTCGTAGGAACCCAAAGTTG
ACGATATGAAAGGATTCAGGCTGGGAACTGCGGACGACTTATAGACTAGC
AAGAGAGGAGTGCCTATATATTTGTAACAGGCTTGCTTGCCACCGTTCTT
CGATATAACAAAACCAATAACGAAGCTTGTAACCT
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Coding sequence (CDS) from alignment at CM002461.1:794079..795013-

>rna3604 ID=rna3604|Name=rna3604|organism=Nannochloropsis gaditana|type=CDS|length=1176bp|location=Sequence derived from alignment at CM002461.1:794079..795013- (Nannochloropsis gaditana)
GTGTCACGGCTCAAACTTTATTTGCCGTATATGGTACGGAAGAAGGCAAT
TAAAAAAATCATGGCTCATGACGAGGAGAATGAGTGTGGGATGGGTGACA
CGGTGCGTATCAAGCCCTCGCGGCCGTTGAGCAAGAGAAAGCGATTTGTC
TTGCACGAGGTGATTCGTAGGAACCCAAAGTTGACGATATGAATGCTTGG
ACACGCGGGCCTAGGCCTCCGTCGTTGGGTCGGCAATGCGGTCAAATTTA
CAACAAAGCCTGATGCTATTAGCTTTCCTCCATGCCGCACCCTCACTTGC
ACCAGCAGAAGCCTCGCCGCCTTCGTGTCCACCTTTGACGGAAGCAGTTC
CCTCGTTTTTCCCGATTGTAATCGAGCTTCATTGCGACATCACCATCACC
ATGGCAGTCCCTTGATGGCCTTCTCAAGAGGGTTTTCCACCCCCCGAGAG
AGCCCTGCCGCCGATCTCGACGTCCCTGCAGAAAGTATTCAAGGGGAAGA
TGAAGTGCTGGAAAATCCCAAGCCTCCCCGTAACTCCTTGGTGGGTGTGG
TTATCTCGGACAAGATGGATAAGTCGATAGTTGTCAAGGTGTCACGGCTC
AAACTTTATTTGCCGTATATGGTACGGAAGAAGGCAATTAAAAAAATCAT
GGCTCATGACGAGGAGAATGAGTGTGGGATGGGTGACACGGTGCGTATCA
AGCCCTCGCGGCCGTTGAGCAAGAGAAAGCGATTTGTCTTGCACGAGGTG
ATTCGTAGGAACCCAAAGTTGACGATATGAATGCTTGGACACGCGGGCCT
AGGCCTCCGTCGTTGGGTCGGCAATGCGGTCAAATTTACAACAAAGCCTG
ATGCTATTAGCTTTCCTCCATGCCGCACCCTCACTTGCACCAGCAGAAGC
CTCGCCGCCTTCGTGTCCACCTTTGACGGAAGCAGTTCCCTCGTTTTTCC
CGATTGTAATCGAGCTTCATTGCGACATCACCATCACCATGGCAGTCCCT
TGATGGCCTTCTCAAGAGGGTTTTCCACCCCCCGAGAGAGCCCTGCCGCC
GATCTCGACGTCCCTGCAGAAAGTATTCAAGGGGAAGATGAAGTGCTGGA
AAATCCCAAGCCTCCCCGTAACTCCTTGGTGGGTGTGGTTATCTCGGACA
AGATGGATAAGTCGATAGTTGTCAAG
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Synonyms
Publications