EWM27075.1, cds3595 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|585109250|gb|EWM27075.1| (30s ribosomal protein s17 [Nannochloropsis gaditana]) HSP 1 Score: 400.593 bits (1028), Expect = 2.683e-141 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0 Query: 1 MLGHAGLGLRRWVGNAVKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDGSSSLVFPDCNRASLRHHHHHGSPLMAFSRGFSTPRESPAADLDVPAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI 195 MLGHAGLGLRRWVGNAVKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDGSSSLVFPDCNRASLRHHHHHGSPLMAFSRGFSTPRESPAADLDVPAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI Sbjct: 1 MLGHAGLGLRRWVGNAVKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDGSSSLVFPDCNRASLRHHHHHGSPLMAFSRGFSTPRESPAADLDVPAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI 195
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1094032221|ref|WP_071028094.1| (30S ribosomal protein S17 [Peptoniphilus sp. KHD4]) HSP 1 Score: 84.3445 bits (207), Expect = 3.583e-18 Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 0 Query: 113 RNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189 R ++VGVV SDKM+K+IVV V K + Y R K KK AHDE NECG+GD VRI +RPLSK KRF L EVI + Sbjct: 6 RKTIVGVVTSDKMEKTIVVSVESFKTHPIYKKRYKNTKKYKAHDENNECGIGDRVRIMETRPLSKDKRFRLVEVIEK 82
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1084883879|gb|OGR10681.1| (30S ribosomal protein S17 [Desulfobacula sp. GWF2_41_7] >gi|1084902955|gb|OGR24618.1| 30S ribosomal protein S17 [Desulfobacterales bacterium RIFOXYA12_FULL_46_15]) HSP 1 Score: 84.3445 bits (207), Expect = 3.663e-18 Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 0 Query: 106 LENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKK---AIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189 +E K + L+G++ISDKMDKS+VV+V R ++P+ V KK KK AHDE+NEC +GDTV+I +RPLSK KRF + E++++ Sbjct: 1 METIKKNKKELIGLIISDKMDKSVVVQVER---FIPHAVYKKFMKQFKKYHAHDEKNECKVGDTVKIIETRPLSKLKRFRVSEIVKK 84
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1084864266|gb|OGQ93712.1| (30S ribosomal protein S17 [Deltaproteobacteria bacterium RIFOXYC2_FULL_48_10] >gi|1084898534|gb|OGR21407.1| 30S ribosomal protein S17 [Desulfobacula sp. RIFOXYA12_FULL_46_16]) HSP 1 Score: 83.5741 bits (205), Expect = 8.288e-18 Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 0 Query: 106 LENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIK---KIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189 +E K + L+G++ISDKMDKS+VV+V R ++P+ V KK +K K AHDE+NEC +GD V+I +RPLSK KRF + E++++ Sbjct: 1 METTKKNKKELIGLIISDKMDKSVVVQVER---FIPHAVYKKFVKQFKKYHAHDEKNECKIGDMVKIIETRPLSKLKRFRVSEIVKK 84
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|802537748|ref|XP_012065838.1| (uncharacterized protein LOC105628944 [Jatropha curcas] >gi|643741240|gb|KDP46744.1| hypothetical protein JCGZ_06532 [Jatropha curcas]) HSP 1 Score: 83.9593 bits (206), Expect = 1.113e-17 Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 0 Query: 115 SLVGVVISDKMDKSIVVKVSRL---KLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189 S+VG+V+S+KM KS+VV V RL KLY Y+ K K MAHDE+N+C +GD VR+ PSRPLSKRK +V+ E++++ Sbjct: 3 SVVGMVVSNKMQKSVVVAVDRLFHNKLYNRYV---KRTSKFMAHDEQNQCNIGDRVRLDPSRPLSKRKHWVVAEILKK 77
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|672141154|ref|XP_008794397.1| (PREDICTED: 30S ribosomal protein S17-like [Phoenix dactylifera]) HSP 1 Score: 83.9593 bits (206), Expect = 1.150e-17 Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0 Query: 115 SLVGVVISDKMDKSIVVKVSRL---KLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189 S+VG+V+S+KM KS+VV V RL KLY Y+ K K MAHDE N C +GD VR+ PSRPLSKRK +V+ E++RR Sbjct: 3 SVVGIVVSNKMQKSVVVAVDRLFHHKLYNRYV---KRTSKFMAHDENNNCNIGDRVRLDPSRPLSKRKHWVVAEILRR 77
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1052171387|ref|XP_008781383.2| (PREDICTED: 30S ribosomal protein S17-like [Phoenix dactylifera]) HSP 1 Score: 84.7297 bits (208), Expect = 1.160e-17 Identity = 52/118 (44.07%), Postives = 70/118 (59.32%), Query Frame = 0 Query: 75 MAFSRGFSTPRESPAADLDVPAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRL---KLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189 M RG + D A+SI+GE + KP +VG+V+S+KM KS+VV V RL KLY Y+ K K MAHDE N+C +GD V++ PSRPLSK K +V+ E++RR Sbjct: 1 MCIERGREGEQRCFPLDSLSRAQSIEGEGGEEDKMKP----VVGIVVSNKMQKSVVVAVDRLFHHKLYNRYV---KRTSKFMAHDENNDCNIGDRVKLDPSRPLSKWKHWVVAEILRR 111
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1026768114|gb|OAE28318.1| (hypothetical protein AXG93_2490s1060 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 83.9593 bits (206), Expect = 1.163e-17 Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 0 Query: 115 SLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189 S VG V+S+KM KS+VV V RL + Y K K MAHDE N+C +GD VRI PSRPLSKRK +V+ E+IRR Sbjct: 3 SAVGKVVSNKMQKSVVVAVERLTQHPLYPKFLKKTSKFMAHDENNDCNIGDQVRITPSRPLSKRKTWVVSEIIRR 77
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|976923388|gb|KVI07722.1| (hypothetical protein Ccrd_013917 [Cynara cardunculus var. scolymus]) HSP 1 Score: 83.5741 bits (205), Expect = 1.187e-17 Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 0 Query: 115 SLVGVVISDKMDKSIVVKVSRL---KLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189 S+VG+V+S+KM KS+VV V RL KLY Y+ K K MAHDE+N+C +GD VR+ PSRPLSKRK +V+ E++++ Sbjct: 3 SVVGMVVSNKMQKSVVVAVDRLFHNKLYNRYV---KRTSKFMAHDEQNQCNIGDRVRLDPSRPLSKRKNWVVAEILKK 77
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|295111414|emb|CBL28164.1| (SSU ribosomal protein S17P [Fretibacterium fastidiosum]) HSP 1 Score: 83.5741 bits (205), Expect = 1.199e-17 Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0 Query: 113 RNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNP 191 R VG+V+S+KMDK++VVKVSRL + Y R + KK +AHD EN C +GD VRI+ +RPLSK KR+ L EV+RR P Sbjct: 12 RKVRVGIVVSNKMDKTVVVKVSRLAEHPLYGKRIRRAKKYVAHDAENTCRVGDEVRIRETRPLSKTKRWELVEVMRRAP 90 The following BLAST results are available for this feature:
BLAST of EWM27075.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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