EWM27075.1, cds3595 (CDS) Nannochloropsis gaditana

Overview
NameEWM27075.1
Unique Namecds3595
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:794551..794946 -
Alignment locationCM002461.1:794205..794396 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27075.1
Product30s ribosomal protein s17
Orig transcript idgnl|cribi|Naga_100194g13.7127.mrna
GenerpsQ
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:794551..794946 -
CM002461.1supercontigCM002461.1:794205..794396 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR000266Ribosomal_S17
Homology
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|585109250|gb|EWM27075.1| (30s ribosomal protein s17 [Nannochloropsis gaditana])

HSP 1 Score: 400.593 bits (1028), Expect = 2.683e-141
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MLGHAGLGLRRWVGNAVKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDGSSSLVFPDCNRASLRHHHHHGSPLMAFSRGFSTPRESPAADLDVPAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI 195
            MLGHAGLGLRRWVGNAVKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDGSSSLVFPDCNRASLRHHHHHGSPLMAFSRGFSTPRESPAADLDVPAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI
Sbjct:    1 MLGHAGLGLRRWVGNAVKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDGSSSLVFPDCNRASLRHHHHHGSPLMAFSRGFSTPRESPAADLDVPAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI 195          
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1094032221|ref|WP_071028094.1| (30S ribosomal protein S17 [Peptoniphilus sp. KHD4])

HSP 1 Score: 84.3445 bits (207), Expect = 3.583e-18
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 0
Query:  113 RNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189
            R ++VGVV SDKM+K+IVV V   K +  Y  R K  KK  AHDE NECG+GD VRI  +RPLSK KRF L EVI +
Sbjct:    6 RKTIVGVVTSDKMEKTIVVSVESFKTHPIYKKRYKNTKKYKAHDENNECGIGDRVRIMETRPLSKDKRFRLVEVIEK 82          
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1084883879|gb|OGR10681.1| (30S ribosomal protein S17 [Desulfobacula sp. GWF2_41_7] >gi|1084902955|gb|OGR24618.1| 30S ribosomal protein S17 [Desulfobacterales bacterium RIFOXYA12_FULL_46_15])

HSP 1 Score: 84.3445 bits (207), Expect = 3.663e-18
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 0
Query:  106 LENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKK---AIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189
            +E  K  +  L+G++ISDKMDKS+VV+V R   ++P+ V KK     KK  AHDE+NEC +GDTV+I  +RPLSK KRF + E++++
Sbjct:    1 METIKKNKKELIGLIISDKMDKSVVVQVER---FIPHAVYKKFMKQFKKYHAHDEKNECKVGDTVKIIETRPLSKLKRFRVSEIVKK 84          
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1084864266|gb|OGQ93712.1| (30S ribosomal protein S17 [Deltaproteobacteria bacterium RIFOXYC2_FULL_48_10] >gi|1084898534|gb|OGR21407.1| 30S ribosomal protein S17 [Desulfobacula sp. RIFOXYA12_FULL_46_16])

HSP 1 Score: 83.5741 bits (205), Expect = 8.288e-18
Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 0
Query:  106 LENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIK---KIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189
            +E  K  +  L+G++ISDKMDKS+VV+V R   ++P+ V KK +K   K  AHDE+NEC +GD V+I  +RPLSK KRF + E++++
Sbjct:    1 METTKKNKKELIGLIISDKMDKSVVVQVER---FIPHAVYKKFVKQFKKYHAHDEKNECKIGDMVKIIETRPLSKLKRFRVSEIVKK 84          
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|802537748|ref|XP_012065838.1| (uncharacterized protein LOC105628944 [Jatropha curcas] >gi|643741240|gb|KDP46744.1| hypothetical protein JCGZ_06532 [Jatropha curcas])

HSP 1 Score: 83.9593 bits (206), Expect = 1.113e-17
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 0
Query:  115 SLVGVVISDKMDKSIVVKVSRL---KLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189
            S+VG+V+S+KM KS+VV V RL   KLY  Y+   K   K MAHDE+N+C +GD VR+ PSRPLSKRK +V+ E++++
Sbjct:    3 SVVGMVVSNKMQKSVVVAVDRLFHNKLYNRYV---KRTSKFMAHDEQNQCNIGDRVRLDPSRPLSKRKHWVVAEILKK 77          
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|672141154|ref|XP_008794397.1| (PREDICTED: 30S ribosomal protein S17-like [Phoenix dactylifera])

HSP 1 Score: 83.9593 bits (206), Expect = 1.150e-17
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0
Query:  115 SLVGVVISDKMDKSIVVKVSRL---KLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189
            S+VG+V+S+KM KS+VV V RL   KLY  Y+   K   K MAHDE N C +GD VR+ PSRPLSKRK +V+ E++RR
Sbjct:    3 SVVGIVVSNKMQKSVVVAVDRLFHHKLYNRYV---KRTSKFMAHDENNNCNIGDRVRLDPSRPLSKRKHWVVAEILRR 77          
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1052171387|ref|XP_008781383.2| (PREDICTED: 30S ribosomal protein S17-like [Phoenix dactylifera])

HSP 1 Score: 84.7297 bits (208), Expect = 1.160e-17
Identity = 52/118 (44.07%), Postives = 70/118 (59.32%), Query Frame = 0
Query:   75 MAFSRGFSTPRESPAADLDVPAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRL---KLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189
            M   RG    +     D    A+SI+GE    +  KP    +VG+V+S+KM KS+VV V RL   KLY  Y+   K   K MAHDE N+C +GD V++ PSRPLSK K +V+ E++RR
Sbjct:    1 MCIERGREGEQRCFPLDSLSRAQSIEGEGGEEDKMKP----VVGIVVSNKMQKSVVVAVDRLFHHKLYNRYV---KRTSKFMAHDENNDCNIGDRVKLDPSRPLSKWKHWVVAEILRR 111          
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|1026768114|gb|OAE28318.1| (hypothetical protein AXG93_2490s1060 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 83.9593 bits (206), Expect = 1.163e-17
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 0
Query:  115 SLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189
            S VG V+S+KM KS+VV V RL  +  Y    K   K MAHDE N+C +GD VRI PSRPLSKRK +V+ E+IRR
Sbjct:    3 SAVGKVVSNKMQKSVVVAVERLTQHPLYPKFLKKTSKFMAHDENNDCNIGDQVRITPSRPLSKRKTWVVSEIIRR 77          
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|976923388|gb|KVI07722.1| (hypothetical protein Ccrd_013917 [Cynara cardunculus var. scolymus])

HSP 1 Score: 83.5741 bits (205), Expect = 1.187e-17
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 0
Query:  115 SLVGVVISDKMDKSIVVKVSRL---KLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRR 189
            S+VG+V+S+KM KS+VV V RL   KLY  Y+   K   K MAHDE+N+C +GD VR+ PSRPLSKRK +V+ E++++
Sbjct:    3 SVVGMVVSNKMQKSVVVAVDRLFHNKLYNRYV---KRTSKFMAHDEQNQCNIGDRVRLDPSRPLSKRKNWVVAEILKK 77          
BLAST of EWM27075.1 vs. NCBI_GenBank
Match: gi|295111414|emb|CBL28164.1| (SSU ribosomal protein S17P [Fretibacterium fastidiosum])

HSP 1 Score: 83.5741 bits (205), Expect = 1.199e-17
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0
Query:  113 RNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNP 191
            R   VG+V+S+KMDK++VVKVSRL  +  Y  R +  KK +AHD EN C +GD VRI+ +RPLSK KR+ L EV+RR P
Sbjct:   12 RKVRVGIVVSNKMDKTVVVKVSRLAEHPLYGKRIRRAKKYVAHDAENTCRVGDEVRIRETRPLSKTKRWELVEVMRRAP 90          
The following BLAST results are available for this feature:
BLAST of EWM27075.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109250|gb|EWM27075.1|2.683e-141100.0030s ribosomal protein s17 [Nannochloropsis gaditan... [more]
gi|1094032221|ref|WP_071028094.1|3.583e-1858.4430S ribosomal protein S17 [Peptoniphilus sp. KHD4][more]
gi|1084883879|gb|OGR10681.1|3.663e-1849.4330S ribosomal protein S17 [Desulfobacula sp. GWF2_... [more]
gi|1084864266|gb|OGQ93712.1|8.288e-1848.2830S ribosomal protein S17 [Deltaproteobacteria bac... [more]
gi|802537748|ref|XP_012065838.1|1.113e-1753.85uncharacterized protein LOC105628944 [Jatropha cur... [more]
gi|672141154|ref|XP_008794397.1|1.150e-1756.41PREDICTED: 30S ribosomal protein S17-like [Phoenix... [more]
gi|1052171387|ref|XP_008781383.2|1.160e-1744.07PREDICTED: 30S ribosomal protein S17-like [Phoenix... [more]
gi|1026768114|gb|OAE28318.1|1.163e-1757.33hypothetical protein AXG93_2490s1060 [Marchantia p... [more]
gi|976923388|gb|KVI07722.1|1.187e-1753.85hypothetical protein Ccrd_013917 [Cynara carduncul... [more]
gi|295111414|emb|CBL28164.1|1.199e-1755.70SSU ribosomal protein S17P [Fretibacterium fastidi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3604rna3604Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications