rna3601, rna3601 (mRNA) Nannochloropsis gaditana

Overview
Namerna3601
Unique Namerna3601
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length966
Alignment locationCM002461.1:786631..787935 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100194g16.7120.mrna
Orig protein idgnl|cribi|Naga_100194g16.7120
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:786631..787935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100194g16gene3468Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27068.1cds3592Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3601rna3601-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3601 ID=rna3601|Name=rna3601|organism=Nannochloropsis gaditana|type=mRNA|length=966bp
CCCCCTCTCCCTCAGGAACACTGCTGCCTGGTCTTCGAACGCTTGGGCAC
CTCCCTCTACGACTTCATGAAGGCCCACGACTACCAGCCCTACCCGCTCT
TCCCCCACGTCCGGGACTTCGCCCGGCAGCTGCTTGAGGCCCTGGAGTTC
CTGGAGGGCCTGCGCTTGGTCCACACGGACCTGAAGCCGGAGAACGTCTT
GCTCTGCGGGACCGGCGAGGCCACGCAGGAGAAGGGGGGTCGCTCCTTCC
TCGTCCCGGCCTCCACCAAGGTCAAAGTGATCGATTTCGGGGGGGCGACA
TTCGATGATGACGCGCGCAAGAGCACCATCATCAACACGCGCCAGTACCG
GGCGCCGGAGGTGATTTTGGAGATAGGCTGGAGCTACCCGTCGGATTTGT
GGTCAGTGGGGTGCATCATCGCCGAGCTGTACAAGGGCGACGTCCTTTTT
GCCACGCACAACAACACGGAGCACCTGGCTTTGATGGAGCGATGCCTGGG
TCCGTTTCCCCGGCACATGCTGGAAGAGTCCAGGGAGGTGGCGCCGAAAT
TCTTCGACATGAGCCCGCAAGGGAAAGGCCGGAGCCGGTGGAGGGAGGAT
TTGGATGCGGAGAGTCAGCGACATGTTCGGCGGATGCCACGGTTATCGGA
GGTCTTCCAGGAGGACAAAGATTCCGGAATCGTTGAGGTAGTGCAAGGTT
TGCTTGAGATCGATCCGCGGAAGCGCTTGACGGCCACACAAGCGTTAAAA
ATGCCTTTTTTTGCAGGCCCGTTCGATGGAAGATAAAGGATTCGGAGGAG
ACAAATGAGAGACACGAAAGTACGTTATGTAGCACGATGGAGAAGGGAGG
CTGAGCACGGAAGTAGGGAGGTTGACCTCCGATTGTCTGGGGAGGGGATA
CCAAAAAGCGTCACAATGTGTACGGTGAACAGTGTAACAATTAAAACTTT
CATGCAGCTTGCACAG
back to top

protein sequence of rna3601

>rna3601-protein ID=rna3601-protein|Name=rna3601|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MHRGGGGRNGHGRVCSREADRGGVPAHGKNGYNPDPVLDQGARCETKSFH
GREGVIGGGENASCLEKEDLNDRPVRGGTGGESQTERNVFQCGRARETRG
HSKGRMDPHVERYASRREGVWEGTSSGGRRDGKAHGAHLGEGGTSVASYN
THDRNGKHARQKLRRGGSWEDLRSCEGPEGAGARSREAGGTGWGGQYRRS
PSPGAWGRKERREGRGRWRDREWRQERWRKYRSRSRLPRKGGRRGRSRSS
WGRGRERGERWGEEGGRYWHGRGNEGSTRREWGGGRGDGREGGRGRGRGR
GRKDGSGEGGSSRPGRRGSRSEASRPGRRGSRAEASRPGRRGSRSESEGY
QEGRG
back to top

mRNA from alignment at CM002461.1:786631..787935-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3601 ID=rna3601|Name=rna3601|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp|location=Sequence derived from alignment at CM002461.1:786631..787935- (Nannochloropsis gaditana)
ATCCGTGGTCAGAAAGCCTCCTGCGACAACTACTAGAGCGCATTCTAGGG
GACGCAAGCGGGTTGCCTTGACAATTCCGTTTATTCCGAAGCCCGCGCTC
CTCCTGTTCCACCTCTGACCTCCTCCACTAGGAACAAAGGACGCGCTCTA
ACCTGCCAATCCTCTCCCACCAACATCCATAGCCTTAGCTGTTGCACGCT
AAAGCGAGCAGCCCTGCGGCCTGCGTGGCATCTGGCGGTGATGCATCGTG
GGGGCGGAGGTCGCAATGGCCACGGCCGCGTGTGCAGCAGGGAAGCCGAT
CGTGGTGGTGTTCCAGCCCATGGCAAAAACGGATACAATCCGGATCCAGT
GTTGGACCAGGGGGCCAGGTGCGAGACAAAAAGTTTTCATGGTAGAGAAG
GTGTAATTGGCGGGGGGGAGAACGCTTCGTGCTTAGAAAAGGAGGACTTG
AATGATCGGCCTGTCAGAGGGGGCACGGGTGGAGAGAGCCAAACGGAAAG
GAATGTTTTTCAGTGTGGGAGAGCGAGAGAGACCCGCGGGCACAGCAAGG
GAAGGATGGACCCTCATGTGGAGAGGTATGCATCGAGAAGGGAAGGGGTC
TGGGAAGGGACTTCCTCGGGAGGCCGCAGAGACGGGAAAGCACACGGCGC
GCATCTGGGTGAGGGCGGCACATCAGTGGCCTCTTACAATACTCACGACA
GAAATGGGAAACACGCAAGGCAAAAGTTGAGAAGAGGGGGGAGCTGGGAA
GACCTGCGGTCGTGTGAGGGCCCTGAGGGGGCGGGGGCCCGGTCGAGAGA
GGCGGGGGGTACGGGTTGGGGGGGCCAATACCGGCGAAGCCCAAGTCCTG
GAGCGTGGGGGCGGAAAGAGAGGCGAGAGGGGCGGGGACGGTGGCGAGAC
AGGGAGTGGCGGCAAGAGCGGTGGCGGAAATATAGGTCGCGTAGCCGCCT
GCCCAGGAAGGGGGGGAGGAGGGGGCGCTCTCGCTCAAGTTGGGGGCGGG
GGCGAGAGCGAGGCGAGCGGTGGGGAGAGGAGGGGGGCCGCTATTGGCAT
GGGAGGGGGAACGAGGGGAGTACAAGGCGGGAATGGGGTGGAGGTCGGGG
CGACGGGCGGGAGGGAGGGAGGGGGAGAGGGAGGGGGAGAGGGCGGAAGG
ACGGGAGTGGAGAGGGAGGGTCCTCGCGTCCTGGCCGCCGGGGCTCAAGG
TCGGAGGCCTCGCGTCCTGGCCGCCGGGGCTCAAGGGCGGAGGCCTCGCG
TCCTGGCCGCCGGGGCTCAAGGTCGGAGTCGGAGGGGTATCAGGAGGGGC
GGGGG
back to top

Coding sequence (CDS) from alignment at CM002461.1:786631..787935-

>rna3601 ID=rna3601|Name=rna3601|organism=Nannochloropsis gaditana|type=CDS|length=1065bp|location=Sequence derived from alignment at CM002461.1:786631..787935- (Nannochloropsis gaditana)
ATGCATCGTGGGGGCGGAGGTCGCAATGGCCACGGCCGCGTGTGCAGCAG
GGAAGCCGATCGTGGTGGTGTTCCAGCCCATGGCAAAAACGGATACAATC
CGGATCCAGTGTTGGACCAGGGGGCCAGGTGCGAGACAAAAAGTTTTCAT
GGTAGAGAAGGTGTAATTGGCGGGGGGGAGAACGCTTCGTGCTTAGAAAA
GGAGGACTTGAATGATCGGCCTGTCAGAGGGGGCACGGGTGGAGAGAGCC
AAACGGAAAGGAATGTTTTTCAGTGTGGGAGAGCGAGAGAGACCCGCGGG
CACAGCAAGGGAAGGATGGACCCTCATGTGGAGAGGTATGCATCGAGAAG
GGAAGGGGTCTGGGAAGGGACTTCCTCGGGAGGCCGCAGAGACGGGAAAG
CACACGGCGCGCATCTGGGTGAGGGCGGCACATCAGTGGCCTCTTACAAT
ACTCACGACAGAAATGGGAAACACGCAAGGCAAAAGTTGAGAAGAGGGGG
GAGCTGGGAAGACCTGCGGTCGTGTGAGGGCCCTGAGGGGGCGGGGGCCC
GGTCGAGAGAGGCGGGGGGTACGGGTTGGGGGGGCCAATACCGGCGAAGC
CCAAGTCCTGGAGCGTGGGGGCGGAAAGAGAGGCGAGAGGGGCGGGGACG
GTGGCGAGACAGGGAGTGGCGGCAAGAGCGGTGGCGGAAATATAGGTCGC
GTAGCCGCCTGCCCAGGAAGGGGGGGAGGAGGGGGCGCTCTCGCTCAAGT
TGGGGGCGGGGGCGAGAGCGAGGCGAGCGGTGGGGAGAGGAGGGGGGCCG
CTATTGGCATGGGAGGGGGAACGAGGGGAGTACAAGGCGGGAATGGGGTG
GAGGTCGGGGCGACGGGCGGGAGGGAGGGAGGGGGAGAGGGAGGGGGAGA
GGGCGGAAGGACGGGAGTGGAGAGGGAGGGTCCTCGCGTCCTGGCCGCCG
GGGCTCAAGGTCGGAGGCCTCGCGTCCTGGCCGCCGGGGCTCAAGGGCGG
AGGCCTCGCGTCCTGGCCGCCGGGGCTCAAGGTCGGAGTCGGAGGGGTAT
CAGGAGGGGCGGGGG
back to top
Synonyms
Publications