rna3600, rna3600 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3600
Unique Name	rna3600
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1122
Alignment location	CM002461.1:785025..785990 -

Link to JBrowse

Properties


Property Name	Value
Product	Protein kinase, catalytic domain protein
Orig transcript id	gnl\|cribi\|Naga_100046g49.5121.mrna
Orig protein id	gnl\|cribi\|Naga_100046g49.5121
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:785025..785990 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g49	gene3467	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27082.1	cds3591	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3600	rna3600-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:785025..785990-
coding sequence from alignment at CM002461.1:785025..785990-

mRNA sequence

>rna3600 ID=rna3600|Name=rna3600|organism=Nannochloropsis gaditana|type=mRNA|length=1122bp
ATGAAACAAGTTAAAGACTTTGACCCAAAGGATGTTTCAGAGCCCCTGGT
CAAGGCCACCAGGAACCCGGTAGAGCAAGAGGAAGAGCTTCGATTCCAAA
CAAAGGAACGCCAGGCATCACAACTTTTGTTCGCGGACTTATGTCATCGT
CTAGAGCGTGTCACTCACGAAGTGGGGAAACGTCACAGACGTCTCGAGAT
ATTATTTCCTCGCCCCCTCGTGCAGGCGCTCAAAGGCTGTTCGCCTTACC
CTCTTTTTCGCCTGTTGCTGCCTCACATCGATACAACCAGGAAAAATTAC
AGCATTAAGCAAGCAGGATTAGCCAAGCTGTACGTGGAAATCCTGGGGCT
GGACCCAAGGCACTCGAGAGATGCGCAGAAGCTGCTCCGTTACCGCCAGC
CGCGTCCTTCTCGGGAACTGGACTCGACCCCAAAGCGTCCCTGTACCTTC
GACTGGCCGGAAGTGCTTGAAGATATTCTCGCGACCCGAGTGACGCAACA
GGCGTCCCGTGCTACGCTTGGAGAAATAAGTGAAGTCCTTGATCAACTCA
CTCGAGCTACTGAACATCGAAGCCGACAAACGGTTCTTAATCGCATTTTG
CTGTGGCTATCGGCGAAAGAGCAGAAATGGCTGGTTAGGATCATCTTGCA
AGATATGAAAATTGGTTTACGTGAGGAGCAGATTTTGGGCTTTTACCATG
CCCAGGCCATGAGTTTATGGAACGCCACATGCGATTTGCGGTACGTATGC
AGTGCCTTGACTGACAGCAGCCGGCAGATCGATCGAGATGCCCTAGGCGT
CCAGCTGCACCGACCTTTTGCCCCCATGCTTGCCACCATGCTCCACCATC
AGCTTTACAAGGTAGAACCCGCCATGCATGGGCACCCCTTCGCCGTGGAA
ATGAAAATTGATGGCGAGCGTATGCTGTGTCACAAGGACGGAGGCCAGGT
AGAGTGGTTTTCCCGCAGTGCTACGGACTACACGGACAAATACGGGCCGA
TGCTAACACCTCACGTAATCCGATGTGTTGAGGTCGAGCAATGTATCCTA
GACGGGGAGGTTGTAGGCTGGGATTATGAGCAGGAGACGTCCGCTTACCT
TCCTACCACTAAGCAAGCGTAG

protein sequence of rna3600

>rna3600-protein ID=rna3600-protein|Name=rna3600|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
PPLPQEHCCLVFERLGTSLYDFMKAHDYQPYPLFPHVRDFARQLLEALEF
LEGLRLVHTDLKPENVLLCGTGEATQEKGGRSFLVPASTKVKVIDFGGAT
FDDDARKSTIINTRQYRAPEVILEIGWSYPSDLWSVGCIIAELYKGDVLF
ATHNNTEHLALMERCLGPFPRHMLEESREVAPKFFDMSPQGKGRSRWRED
LDAESQRHVRRMPRLSEVFQEDKDSGIVEVVQGLLEIDPRKRLTATQALK
MPFFAGPFDGR

mRNA from alignment at CM002461.1:785025..785990-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3600 ID=rna3600|Name=rna3600|organism=Nannochloropsis gaditana|type=mRNA|length=966bp|location=Sequence derived from alignment at CM002461.1:785025..785990- (Nannochloropsis gaditana)
CCCCCTCTCCCTCAGGAACACTGCTGCCTGGTCTTCGAACGCTTGGGCAC
CTCCCTCTACGACTTCATGAAGGCCCACGACTACCAGCCCTACCCGCTCT
TCCCCCACGTCCGGGACTTCGCCCGGCAGCTGCTTGAGGCCCTGGAGTTC
CTGGAGGGCCTGCGCTTGGTCCACACGGACCTGAAGCCGGAGAACGTCTT
GCTCTGCGGGACCGGCGAGGCCACGCAGGAGAAGGGGGGTCGCTCCTTCC
TCGTCCCGGCCTCCACCAAGGTCAAAGTGATCGATTTCGGGGGGGCGACA
TTCGATGATGACGCGCGCAAGAGCACCATCATCAACACGCGCCAGTACCG
GGCGCCGGAGGTGATTTTGGAGATAGGCTGGAGCTACCCGTCGGATTTGT
GGTCAGTGGGGTGCATCATCGCCGAGCTGTACAAGGGCGACGTCCTTTTT
GCCACGCACAACAACACGGAGCACCTGGCTTTGATGGAGCGATGCCTGGG
TCCGTTTCCCCGGCACATGCTGGAAGAGTCCAGGGAGGTGGCGCCGAAAT
TCTTCGACATGAGCCCGCAAGGGAAAGGCCGGAGCCGGTGGAGGGAGGAT
TTGGATGCGGAGAGTCAGCGACATGTTCGGCGGATGCCACGGTTATCGGA
GGTCTTCCAGGAGGACAAAGATTCCGGAATCGTTGAGGTAGTGCAAGGTT
TGCTTGAGATCGATCCGCGGAAGCGCTTGACGGCCACACAAGCGTTAAAA
ATGCCTTTTTTTGCAGGCCCGTTCGATGGAAGATAAAGGATTCGGAGGAG
ACAAATGAGAGACACGAAAGTACGTTATGTAGCACGATGGAGAAGGGAGG
CTGAGCACGGAAGTAGGGAGGTTGACCTCCGATTGTCTGGGGAGGGGATA
CCAAAAAGCGTCACAATGTGTACGGTGAACAGTGTAACAATTAAAACTTT
CATGCAGCTTGCACAG

Coding sequence (CDS) from alignment at CM002461.1:785025..785990-

>rna3600 ID=rna3600|Name=rna3600|organism=Nannochloropsis gaditana|type=CDS|length=786bp|location=Sequence derived from alignment at CM002461.1:785025..785990- (Nannochloropsis gaditana)
CCCCCTCTCCCTCAGGAACACTGCTGCCTGGTCTTCGAACGCTTGGGCAC
CTCCCTCTACGACTTCATGAAGGCCCACGACTACCAGCCCTACCCGCTCT
TCCCCCACGTCCGGGACTTCGCCCGGCAGCTGCTTGAGGCCCTGGAGTTC
CTGGAGGGCCTGCGCTTGGTCCACACGGACCTGAAGCCGGAGAACGTCTT
GCTCTGCGGGACCGGCGAGGCCACGCAGGAGAAGGGGGGTCGCTCCTTCC
TCGTCCCGGCCTCCACCAAGGTCAAAGTGATCGATTTCGGGGGGGCGACA
TTCGATGATGACGCGCGCAAGAGCACCATCATCAACACGCGCCAGTACCG
GGCGCCGGAGGTGATTTTGGAGATAGGCTGGAGCTACCCGTCGGATTTGT
GGTCAGTGGGGTGCATCATCGCCGAGCTGTACAAGGGCGACGTCCTTTTT
GCCACGCACAACAACACGGAGCACCTGGCTTTGATGGAGCGATGCCTGGG
TCCGTTTCCCCGGCACATGCTGGAAGAGTCCAGGGAGGTGGCGCCGAAAT
TCTTCGACATGAGCCCGCAAGGGAAAGGCCGGAGCCGGTGGAGGGAGGAT
TTGGATGCGGAGAGTCAGCGACATGTTCGGCGGATGCCACGGTTATCGGA
GGTCTTCCAGGAGGACAAAGATTCCGGAATCGTTGAGGTAGTGCAAGGTT
TGCTTGAGATCGATCCGCGGAAGCGCTTGACGGCCACACAAGCGTTAAAA
ATGCCTTTTTTTGCAGGCCCGTTCGATGGAAGATAA

Synonyms

Publications