rna3599, rna3599 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3599
Unique Name	rna3599
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1358
Alignment location	CM002461.1:782997..784431 -

Link to JBrowse

Properties


Property Name	Value
Product	dna ligase 4
Orig transcript id	gnl\|cribi\|Naga_100046g48.5136.mrna
Orig protein id	gnl\|cribi\|Naga_100046g48.5136
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:782997..784431 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g48	gene3466	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3599	rna3599-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27097.1	cds3590	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:782997..784431-
coding sequence from alignment at CM002461.1:782997..784431-

mRNA sequence

>rna3599 ID=rna3599|Name=rna3599|organism=Nannochloropsis gaditana|type=mRNA|length=1358bp
AGCTGCTGTAATCTCGTGGCTAGCAATGCGAACCGATTCGTGTCCCCCCT
GTCCACTACCACATGCGTCACGCCCGCATGGAGGCTATCGCTCACTTCAC
CGCCATGGAGGCGGATGATTGCATCGTAGTGATCTAGTTTGGTTACAGGC
AAGGAACGTTTGCAACTTCCGTGCACTTCCAGGACCTCCTTGACTGGGTC
AGAATCTATAGCTATCGGTCCCACGTCCTCGAAACGGTCAAGATAGACCG
TGCATCCGCCAAAGACATCCAAGGGATGATTCTGGAAGATGCTGCGCACA
TCACATTCTCTGTCACTACGCACACGCTGAAGAAGCTGAGAGGATTTCAA
GCCCCGGGGACCTGCTCTGGTGTGTTGAAGCTTTATATGGCGGAAGCAGC
GAGACAGTGCTTTCACGGAAGTGGTTTCTCCATAAGGGTCCCCAAACGCA
TCGACGACATCACTGAATTTGTCGCGGGTTGCCTGGGTCATGTAAATGTA
CTCATCAAAGTGAGGGGGGCTGCAACGTGTCTGGCGAATGCACCGCAGCA
AAAAAGGCAATCCCACAATATCGAAATTGCCACTCTTGATCAGCAGTTTT
ACCCGCAAACTCTTGCTGTCGGGTGCAAGGATAAAATCTGTTTTGCCCTG
GCGTGGTGAGCATGTAAGGGTTCCACCGTTGGCTACAACCATTTCTTCTA
CCTCATTTTTCGAGAGGCAGCGATTATCGTCCGCACTGCTCCTGGATACT
GCAGCAAAGTCTTCAGCACGCTCATCTTGGCTGCCAAATTGATCAGCACG
ATCAGCACTGCCTGTCGAACCCTCATCTGAGGTAGGCGGTGGAAGTGTGA
AATTTCCTATGATACAAAACTCTATCCCCTGTAACATGTTCCTTTCCACC
GGTATTGTGTCCGATAAAATGGTTTTGTAACTGCCGACGACGCGAACGGG
TGGTGCTTTTTGCCTGTTGCGTGCATCTGTGCTTGCAGAATGACGGAACG
ACATTGATGGAGTCGACGGTGGGGATGGTGGTAGCGGTGCAGTTGGATAT
GTAACATACATGGATGAATGTGGACGCACGTTACGCGTCTCTGCCGTGGG
TTTGCGCGTTGGAGATTCAAAGATTTCTTTCAGCTCGGTCTGTGTTAAAC
ATTCTGACCATGTTTTATCGTGGCGCACTGCCTCGATGCGTGGAAATCTG
AGAGTCAGACCGGAGGAGAAATCGCTGCTTTCGTTTATCTCGGCGCACTT
GAGCTCAAGAATCACCGATTCACTGGGCTCAATGACAAAATCAGGTATAT
TCCGCCGGGATGGTCTCCATGGTTTAAAGTAAGACGGTAAGCGGAGACCT
CCTCGCCA

protein sequence of rna3599

>rna3599-protein ID=rna3599-protein|Name=rna3599|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MKQVKDFDPKDVSEPLVKATRNPVEQEEELRFQTKERQASQLLFADLCHR
LERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNY
SIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTF
DWPEVLEDILATRVTQQASRATLGEISEVLDQLTRATEHRSRQTVLNRIL
LWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVC
SALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVE
MKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVEQCIL
DGEVVGWDYEQETSAYLPTTKQA

mRNA from alignment at CM002461.1:782997..784431-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3599 ID=rna3599|Name=rna3599|organism=Nannochloropsis gaditana|type=mRNA|length=1435bp|location=Sequence derived from alignment at CM002461.1:782997..784431- (Nannochloropsis gaditana)
ATGAAACAAGTTAAAGACTTTGACCCAAAGGATGTTTCAGAGCCCCTGGT
CAAGGCCACCAGGAACCCGGTAGAGCAAGAGGAAGAGCTTCGATTCCAAA
CAAAGGAACGCCAGGCATCACAACTTTTGTTCGCGGACTTATGTCATCGT
CTAGAGCGTGTCACTCACGAAGTGGGGAAACGTCACAGACGTCTCGAGAT
ATTATTTCCTCGCCCCCTCGTGCAGGCGCTCAAAGGCTGTTCGCCTTACC
CTCTTTTTCGCCTGTTGCTGCCTCACATCGATACAACCAGGAAAAATTAC
AGCATTAAGCAAGCAGGATTAGCCAAGCTGTACGTGGAAATCCTGGGGCT
GGACCCAAGGCACTCGAGAGATGCGCAGAAGCTGCTCCGTTACCGCCAGC
CGCGTCCTTCTCGGGAACTGGACTCGACCCCAAAGCGTCCCTGTACCTTC
GACTGGCCGGAAGTGCTTGAAGATATTCTCGCGACCCGAGTGACGCAACA
GGCGTCCCGTGCTACGCTTGGAGAAATAAGTGAAGTCCTTGATCAACTCA
CTCGGTAAGTTTGTCGGGAGAAGCATGCGGGAAAAATGTCGCCAGGCGTC
ACACCGCGTCCCTCCTTCGTGTTGATGGGATTCTGCCCGCTCATGGTCAA
TGATGTGCTTACCTCCACGGACTTCACAGAGCTACTGAACATCGAAGCCG
ACAAACGGTTCTTAATCGCATTTTGCTGTGGCTATCGGCGAAAGAGCAGA
AATGGCTGGTTAGGATCATCTTGCAAGATATGAAAATTGGTTTACGTGAG
GAGCAGATTTTGGGCTTTTACCATGCCCAGGCCATGAGTTTATGGAACGC
CACATGCGATTTGCGGTACGTATGCAGTGCCTTGACTGACAGCAGCCGGC
AGATCGATCGAGATGCCCTAGGCGTCCAGCTGCACCGACCTTTTGCCCCC
ATGCTTGCCACCATGCTCCACCATCAGCTTTACAAGGTAGAACCCGCCAT
GCATGGGCACCCCTTCGCCGTGGAAATGAAAATTGATGGCGAGCGTATGC
TGTGTCACAAGGACGGAGGCCAGGTAGAGTGGTTTTCCCGCAGTGCTACG
GACTACACGGACAAATACGGGCCGATGCTAACACCTCACGTAATCCGATG
TGTTGAGGTCGAGCAATGTATCCTAGACGGGGAGGTTGTAGGCTGGGATT
ATGAGCAGGAGACGTTCTTACCCTTCAAGGAAAATCGCAGCATAATCGCA
GATGACGATCACAGCCGGAGGCGTACACTTGTCTACATTGTTTTTGACAT
TGTCTACCTGGATGATCCACGCGCGTCACAAATGCTCCAGCTCAATAGTT
CGGATATTTCGGGAACAAACAAAGATTTCACGAAAAAAAATGTTACACCA
GGTCCGCTTACCTTCCTACCACTAAGCAAGCGTAG

Coding sequence (CDS) from alignment at CM002461.1:782997..784431-

>rna3599 ID=rna3599|Name=rna3599|organism=Nannochloropsis gaditana|type=CDS|length=3366bp|location=Sequence derived from alignment at CM002461.1:782997..784431- (Nannochloropsis gaditana)
GTCCGCTTACCTTCCTACCACTAAGCAAGCGTAGAGCTACTGAACATCGA
AGCCGACAAACGGTTCTTAATCGCATTTTGCTGTGGCTATCGGCGAAAGA
GCAGAAATGGCTGGTTAGGATCATCTTGCAAGATATGAAAATTGGTTTAC
GTGAGGAGCAGATTTTGGGCTTTTACCATGCCCAGGCCATGAGTTTATGG
AACGCCACATGCGATTTGCGGTACGTATGCAGTGCCTTGACTGACAGCAG
CCGGCAGATCGATCGAGATGCCCTAGGCGTCCAGCTGCACCGACCTTTTG
CCCCCATGCTTGCCACCATGCTCCACCATCAGCTTTACAAGGTAGAACCC
GCCATGCATGGGCACCCCTTCGCCGTGGAAATGAAAATTGATGGCGAGCG
TATGCTGTGTCACAAGGACGGAGGCCAGGTAGAGTGGTTTTCCCGCAGTG
CTACGGACTACACGGACAAATACGGGCCGATGCTAACACCTCACGTAATC
CGATGTGTTGAGGTCGAGCAATGTATCCTAGACGGGGAGGTTGTAGGCTG
GGATTATGAGCAGGAGACATGAAACAAGTTAAAGACTTTGACCCAAAGGA
TGTTTCAGAGCCCCTGGTCAAGGCCACCAGGAACCCGGTAGAGCAAGAGG
AAGAGCTTCGATTCCAAACAAAGGAACGCCAGGCATCACAACTTTTGTTC
GCGGACTTATGTCATCGTCTAGAGCGTGTCACTCACGAAGTGGGGAAACG
TCACAGACGTCTCGAGATATTATTTCCTCGCCCCCTCGTGCAGGCGCTCA
AAGGCTGTTCGCCTTACCCTCTTTTTCGCCTGTTGCTGCCTCACATCGAT
ACAACCAGGAAAAATTACAGCATTAAGCAAGCAGGATTAGCCAAGCTGTA
CGTGGAAATCCTGGGGCTGGACCCAAGGCACTCGAGAGATGCGCAGAAGC
TGCTCCGTTACCGCCAGCCGCGTCCTTCTCGGGAACTGGACTCGACCCCA
AAGCGTCCCTGTACCTTCGACTGGCCGGAAGTGCTTGAAGATATTCTCGC
GACCCGAGTGACGCAACAGGCGTCCCGTGCTACGCTTGGAGAAATAAGTG
AAGTCCTTGATCAACTCACTCGGTCCGCTTACCTTCCTACCACTAAGCAA
GCGTAGAGCTACTGAACATCGAAGCCGACAAACGGTTCTTAATCGCATTT
TGCTGTGGCTATCGGCGAAAGAGCAGAAATGGCTGGTTAGGATCATCTTG
CAAGATATGAAAATTGGTTTACGTGAGGAGCAGATTTTGGGCTTTTACCA
TGCCCAGGCCATGAGTTTATGGAACGCCACATGCGATTTGCGGTACGTAT
GCAGTGCCTTGACTGACAGCAGCCGGCAGATCGATCGAGATGCCCTAGGC
GTCCAGCTGCACCGACCTTTTGCCCCCATGCTTGCCACCATGCTCCACCA
TCAGCTTTACAAGGTAGAACCCGCCATGCATGGGCACCCCTTCGCCGTGG
AAATGAAAATTGATGGCGAGCGTATGCTGTGTCACAAGGACGGAGGCCAG
GTAGAGTGGTTTTCCCGCAGTGCTACGGACTACACGGACAAATACGGGCC
GATGCTAACACCTCACGTAATCCGATGTGTTGAGGTCGAGCAATGTATCC
TAGACGGGGAGGTTGTAGGCTGGGATTATGAGCAGGAGACATGAAACAAG
TTAAAGACTTTGACCCAAAGGATGTTTCAGAGCCCCTGGTCAAGGCCACC
AGGAACCCGGTAGAGCAAGAGGAAGAGCTTCGATTCCAAACAAAGGAACG
CCAGGCATCACAACTTTTGTTCGCGGACTTATGTCATCGTCTAGAGCGTG
TCACTCACGAAGTGGGGAAACGTCACAGACGTCTCGAGATATTATTTCCT
CGCCCCCTCGTGCAGGCGCTCAAAGGCTGTTCGCCTTACCCTCTTTTTCG
CCTGTTGCTGCCTCACATCGATACAACCAGGAAAAATTACAGCATTAAGC
AAGCAGGATTAGCCAAGCTGTACGTGGAAATCCTGGGGCTGGACCCAAGG
CACTCGAGAGATGCGCAGAAGCTGCTCCGTTACCGCCAGCCGCGTCCTTC
TCGGGAACTGGACTCGACCCCAAAGCGTCCCTGTACCTTCGACTGGCCGG
AAGTGCTTGAAGATATTCTCGCGACCCGAGTGACGCAACAGGCGTCCCGT
GCTACGCTTGGAGAAATAAGTGAAGTCCTTGATCAACTCACTCGGTCCGC
TTACCTTCCTACCACTAAGCAAGCGTAGAGCTACTGAACATCGAAGCCGA
CAAACGGTTCTTAATCGCATTTTGCTGTGGCTATCGGCGAAAGAGCAGAA
ATGGCTGGTTAGGATCATCTTGCAAGATATGAAAATTGGTTTACGTGAGG
AGCAGATTTTGGGCTTTTACCATGCCCAGGCCATGAGTTTATGGAACGCC
ACATGCGATTTGCGGTACGTATGCAGTGCCTTGACTGACAGCAGCCGGCA
GATCGATCGAGATGCCCTAGGCGTCCAGCTGCACCGACCTTTTGCCCCCA
TGCTTGCCACCATGCTCCACCATCAGCTTTACAAGGTAGAACCCGCCATG
CATGGGCACCCCTTCGCCGTGGAAATGAAAATTGATGGCGAGCGTATGCT
GTGTCACAAGGACGGAGGCCAGGTAGAGTGGTTTTCCCGCAGTGCTACGG
ACTACACGGACAAATACGGGCCGATGCTAACACCTCACGTAATCCGATGT
GTTGAGGTCGAGCAATGTATCCTAGACGGGGAGGTTGTAGGCTGGGATTA
TGAGCAGGAGACATGAAACAAGTTAAAGACTTTGACCCAAAGGATGTTTC
AGAGCCCCTGGTCAAGGCCACCAGGAACCCGGTAGAGCAAGAGGAAGAGC
TTCGATTCCAAACAAAGGAACGCCAGGCATCACAACTTTTGTTCGCGGAC
TTATGTCATCGTCTAGAGCGTGTCACTCACGAAGTGGGGAAACGTCACAG
ACGTCTCGAGATATTATTTCCTCGCCCCCTCGTGCAGGCGCTCAAAGGCT
GTTCGCCTTACCCTCTTTTTCGCCTGTTGCTGCCTCACATCGATACAACC
AGGAAAAATTACAGCATTAAGCAAGCAGGATTAGCCAAGCTGTACGTGGA
AATCCTGGGGCTGGACCCAAGGCACTCGAGAGATGCGCAGAAGCTGCTCC
GTTACCGCCAGCCGCGTCCTTCTCGGGAACTGGACTCGACCCCAAAGCGT
CCCTGTACCTTCGACTGGCCGGAAGTGCTTGAAGATATTCTCGCGACCCG
AGTGACGCAACAGGCGTCCCGTGCTACGCTTGGAGAAATAAGTGAAGTCC
TTGATCAACTCACTCG

Synonyms

Publications