EWM27097.1, cds3590 (CDS) Nannochloropsis gaditana

Overview
NameEWM27097.1
Unique Namecds3590
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:783878..784431 -
Alignment locationCM002461.1:783219..783752 -
Alignment locationCM002461.1:782997..783030 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27097.1
Productdna ligase 4
Orig transcript idgnl|cribi|Naga_100046g48.5136.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:783878..784431 -
CM002461.1supercontigCM002461.1:783219..783752 -
CM002461.1supercontigCM002461.1:782997..783030 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0051103DNA ligation involved in DNA repair
GO:0006310DNA recombination
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0003677DNA binding
GO:0003910DNA ligase (ATP) activity
Vocabulary: INTERPRO
TermDefinition
IPR029710LIG4
IPR012310DNA_ligase_ATP-dep_cent
IPR012308DNA_ligase_ATP-dep_N
Homology
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|585109274|gb|EWM27097.1| (dna ligase 4 [Nannochloropsis gaditana])

HSP 1 Score: 771.926 bits (1992), Expect = 0.000e+0
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0
Query:    1 MKQVKDFDPKDVSEPLVKATRNPVEQEEELRFQTKERQASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRATLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVEQCILDGEVVGWDYEQETSAYLPTTKQA 373
            MKQVKDFDPKDVSEPLVKATRNPVEQEEELRFQTKERQASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRATLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVEQCILDGEVVGWDYEQETSAYLPTTKQA
Sbjct:    1 MKQVKDFDPKDVSEPLVKATRNPVEQEEELRFQTKERQASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRATLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVEQCILDGEVVGWDYEQETSAYLPTTKQA 373          
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|298714787|emb|CBJ25686.1| (DNA ligase, putative [Ectocarpus siliculosus])

HSP 1 Score: 207.994 bits (528), Expect = 4.969e-56
Identity = 120/348 (34.48%), Postives = 194/348 (55.75%), Query Frame = 0
Query:   27 EEELRFQTKERQASQLLFADLCHRL-ERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKR-PCTFDWPEVLEDILA-TRVTQQASRAT---LGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVEQCILDGEVVGWDYEQETSAYLP 368
            E+E +F   E  A+ L F ++C  L E++ ++ G  ++++ +L P   +  +   S +PL RLLLP +D  R  Y ++ A +A L+ ++   + +      +L  Y  P   R      KR   T D    LE +L  +R   +A  AT   + ++++ L  L  A   + R+ VL RI    S   QKW+ R+IL+++KI +++E +L  +H  A+  +N T  LR VCSA       +      +++   F+PMLA    + L K+ P++ G PF +++K+DGERMLCH++G +V+WF+R+A DYTDKYG  LTPH++  V   +C+LDGEVV WD    T + +P
Sbjct:   16 EDEFKFY-PETAANALSFQEVCENLLEKMANQKGS-NKKIAVLLP--FLGRIGKESSFPLIRLLLPELDNLRDKYGMRTAKMASLFADLYFPNNKKGEGYLRLQSYTDP--DRNSSPGDKRWQVTGDLALTLEYVLTESRFGIKAVDATTWTIRDVNDALSDLANAPNDQRRKQVLTRIRTNCSPMNQKWIARMILKNLKINIKKE-VLKKFHPGALDYYNRTTSLRRVCSAFIGKHSSVTA-TFNLEVFTTFSPMLAMNFFYGLGKIVPSLQGRPFCMDVKLDGERMLCHREGNKVKWFTRNAKDYTDKYGAALTPHIVGGVSAHKCVLDGEVVTWD--DNTGSMVP 353          
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|1173941518|gb|OQR90666.1| (DNA ligase [Achlya hypogyna])

HSP 1 Score: 201.06 bits (510), Expect = 7.054e-54
Identity = 132/333 (39.64%), Postives = 187/333 (56.16%), Query Frame = 0
Query:   39 ASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPR--PSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRATLGEISEVLDQL-----TRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCH----KDG-GQVEWFSRSATDYTDKYGPMLTPHVIRCV-EVEQCILDGEVVGWD 358
            A++L FA  C  L+RV     K   +L+++F      A    S YP  RLLLPH+D  R  Y +K+  LA LYVE+LGL P  S D +KLL +  P    SR +          D+  VL +++  R   +A+ ATLG+I+ +LD L     T A    S+++VL + +   S +EQKWLVRI+L+D+KIGLR E++L F H  A+ ++N T DL  VC  LTDS     R    +   + F PMLA  +     +   AM G+ F +E K+DGER+ CH     DG  +V+  SR+  +YTDKYGP + P++   V +   CILDGE++ WD
Sbjct:    2 AAELPFASFCGLLDRVA-TTSKTDAKLKLIFSPEFRAACGTSSLYPFLRLLLPHLDRDR-TYKLKEKKLAALYVELLGLSPT-SADGKKLLHWTDPTIVTSRAVG---------DFAMVLAEVMTYRSKARATTATLGDINTLLDALNAYDPTAALPMASKKSVLLQFITQFSGEEQKWLVRIVLKDLKIGLRHERVLQFMHPDAVEMFNHTNDLERVCRELTDSRV---RYVPAIAPFQVFTPMLAKRV--PFGECTQAMGGNAFYMEPKLDGERITCHVQHATDGRREVQLISRNGINYTDKYGPCIAPYIDDQVHKAYDCILDGEMLVWD 317          
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|695375849|ref|XP_009515641.1| (hypothetical protein PHYSODRAFT_284249 [Phytophthora sojae] >gi|348688552|gb|EGZ28366.1| hypothetical protein PHYSODRAFT_284249 [Phytophthora sojae])

HSP 1 Score: 199.134 bits (505), Expect = 3.724e-53
Identity = 120/326 (36.81%), Postives = 188/326 (57.67%), Query Frame = 0
Query:   36 ERQASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRA--TLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVE-QCILDGEVVGWD 358
            E  A  L F  LC  L+ V        ++L++LF + L   + G   YPL RL+LP +D  R  Y +K+  +AK+YV++LGL P  S+DAQKL  +  P+    +DS        D+  VL +++  R T   SR   TL +++ +LD L +A  + +R+ V+ ++    SA EQKW++R++L+D+KIGLR E++L F H  AM ++N T DL  VC  L +S+    R    ++  + F PMLA  ++    +   A++   F +E K+DGER+ CH  G +V++ SR+  +YT+ Y P + PHV+  +E    CILDGE++ WD
Sbjct:    3 ETAALGLSFTALCSVLKAV-EATRNNDKKLDLLFSKELRSQVGGGDLYPLVRLVLPQLDRER-TYMLKEKKIAKIYVQVLGLSPA-SKDAQKLEHFHDPKI---VDSK----SVGDFAAVLYEVMLYRSTASKSRQQHTLKDVNALLDSLVQADNNATRKKVIMKLATEYSADEQKWIIRVVLKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRELRNSAV---RYVPQLEPFQVFTPMLAKRVN--FGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTENYAPSIKPHVLSQLEPGVDCILDGEMMVWD 313          
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|675189609|ref|XP_008903689.1| (hypothetical protein PPTG_10159 [Phytophthora parasitica INRA-310] >gi|566026061|gb|ETI48972.1| hypothetical protein F443_07074 [Phytophthora parasitica P1569] >gi|567963318|gb|ETK88818.1| hypothetical protein L915_06974 [Phytophthora parasitica] >gi|567992013|gb|ETL42213.1| hypothetical protein L916_06924 [Phytophthora parasitica] >gi|568051678|gb|ETM48580.1| hypothetical protein L914_06890 [Phytophthora parasitica] >gi|568096460|gb|ETN11211.1| hypothetical protein PPTG_10159 [Phytophthora parasitica INRA-310] >gi|570953470|gb|ETP18727.1| hypothetical protein F441_07087 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 195.667 bits (496), Expect = 5.765e-52
Identity = 120/323 (37.15%), Postives = 186/323 (57.59%), Query Frame = 0
Query:   39 ASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRA--TLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVE-QCILDGEVVGWD 358
            A  L F  LC  L+ V     K   +L++LF   L   + G   YPL RL+LP +D  R  Y +K+  +AK+Y+++LGL P  S+DAQKL  +  P+    +DS        D+  VL D++  +  +  S+   TL +++E+LDQL  A  + +R+ V  ++    SA EQKW++R+IL+D+KIGLR E++L F H  AM ++N T DL  VC  L +S+    R    ++  + F PMLA  ++    +   A++   F +E K+DGER+ CH  G +V++ SR+  +YT+ Y P + PHV+  +E    CILDGE++ WD
Sbjct:   10 ALGLSFTALCSVLKAV-EATRKNDSKLDLLFSPHLHSQVGGGDLYPLIRLVLPQLDRER-TYMLKEKKIAKIYIDVLGLAPI-SKDAQKLEHFNDPKI---VDSK----SVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLADSNAARKKVFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRELRNSAV---RYVPQLEPFQVFTPMLAKRVN--FGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTENYAPSIKPHVLSQLESGVDCILDGEMMVWD 317          
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|570988165|gb|ETP46650.1| (hypothetical protein F442_07141 [Phytophthora parasitica P10297])

HSP 1 Score: 195.667 bits (496), Expect = 5.995e-52
Identity = 120/323 (37.15%), Postives = 186/323 (57.59%), Query Frame = 0
Query:   39 ASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRA--TLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVE-QCILDGEVVGWD 358
            A  L F  LC  L+ V     K   +L++LF   L   + G   YPL RL+LP +D  R  Y +K+  +AK+Y+++LGL P  S+DAQKL  +  P+    +DS        D+  VL D++  +  +  S+   TL +++E+LDQL  A  + +R+ V  ++    SA EQKW++R+IL+D+KIGLR E++L F H  AM ++N T DL  VC  L +S+    R    ++  + F PMLA  ++    +   A++   F +E K+DGER+ CH  G +V++ SR+  +YT+ Y P + PHV+  +E    CILDGE++ WD
Sbjct:   10 ALGLSFTALCSVLKAV-EATRKNDSKLDLLFSPHLHSQVGGGDLYPLIRLVLPQLDRER-TYMLKEKKIAKIYIDVLGLAPI-SKDAQKLEHFNDPKI---VDSK----SVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLADSNAARKKVFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRELRNSAV---RYVPQLEPFQVFTPMLAKRVN--FGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTENYAPSIKPHVLSQLESGVDCILDGEMMVWD 317          
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|570329754|gb|ETO77702.1| (hypothetical protein F444_07143 [Phytophthora parasitica P1976])

HSP 1 Score: 195.667 bits (496), Expect = 5.995e-52
Identity = 120/323 (37.15%), Postives = 186/323 (57.59%), Query Frame = 0
Query:   39 ASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRA--TLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVE-QCILDGEVVGWD 358
            A  L F  LC  L+ V     K   +L++LF   L   + G   YPL RL+LP +D  R  Y +K+  +AK+Y+++LGL P  S+DAQKL  +  P+    +DS        D+  VL D++  +  +  S+   TL +++E+LDQL  A  + +R+ V  ++    SA EQKW++R+IL+D+KIGLR E++L F H  AM ++N T DL  VC  L +S+    R    ++  + F PMLA  ++    +   A++   F +E K+DGER+ CH  G +V++ SR+  +YT+ Y P + PHV+  +E    CILDGE++ WD
Sbjct:   10 ALGLSFTALCSVLKAV-EATRKNDSKLDLLFSPHLHSQVGGGDLYPLIRLVLPQLDRER-TYMLKEKKIAKIYIDVLGLAPI-SKDAQKLEHFNDPKI---VDSK----SVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLADSNAARKKVFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRELRNSAV---RYVPQLEPFQVFTPMLAKRVN--FGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTENYAPSIKPHVLSQLESGVDCILDGEMMVWD 317          
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|970636144|gb|KUF80868.1| (DNA ligase [Phytophthora nicotianae])

HSP 1 Score: 194.897 bits (494), Expect = 1.175e-51
Identity = 118/318 (37.11%), Postives = 184/318 (57.86%), Query Frame = 0
Query:   44 FADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRA--TLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVE-QCILDGEVVGWD 358
            F  LC  L+ V     K   +L++LF   L   + G   YPL RL+LP +D  R  Y +K+  +AK+Y+++LGL P  S+DAQKL  +  P+    +DS        D+  VL D++  +  +  S+   TL +++E+LDQL  A  + +R+ V  ++    SA EQKW++R+IL+D+KIGLR E++L F H  AM ++N T DL  VC  L +S+    R    ++  + F PMLA  ++    +   A++   F +E K+DGER+ CH  G +V++ SR+  +YT+ Y P + PHV+  +E    CILDGE++ WD
Sbjct:   15 FTALCSVLKAV-EATRKNDSKLDLLFSPHLHSQVGGGDLYPLIRLVLPQLDRER-TYMLKEKKIAKIYIDVLGLAPI-SKDAQKLEHFNDPKI---VDSK----SVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLADSNAARKKVFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRELRNSAV---RYVPQLEPFQVFTPMLAKRVN--FGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTENYAPSIKPHVLSQLESGVDCILDGEMMVWD 317          
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|301117706|ref|XP_002906581.1| (DNA ligase, putative [Phytophthora infestans T30-4] >gi|262107930|gb|EEY65982.1| DNA ligase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 194.512 bits (493), Expect = 1.681e-51
Identity = 118/323 (36.53%), Postives = 186/323 (57.59%), Query Frame = 0
Query:   39 ASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRA--TLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVE-QCILDGEVVGWD 358
            A  L F  LC  L+ V     K   +L++LF   L   + G   YPL RL+LP +D  R  Y +K+  +AK+Y+++LGL P  S+DAQKL  +  P+    +DS        D+  VL D++  +  +  S+   TL +++ +LD+L +A  + +R+ V  ++    SA EQKW++R+IL+D+KIGLR E++L F H  AM ++N T DL  VC  L +S+    R    ++  + F PMLA  ++    +   A++   F +E K+DGER+ CH  G +V++ SR+  +YT+ Y P + PHV+  +E    CILDGE++ WD
Sbjct:   14 ALGLSFTALCSVLKAV-EATRKNDSKLDMLFSSSLRAQVGGGDLYPLIRLVLPQLDRER-TYMLKEKKIAKIYIDVLGLAPI-SKDAQKLEHFNDPKI---VDSK----SVGDFAAVLFDVVLYQSARTKSKTHHTLEDVNTLLDRLVQADNNAARKKVFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCKELRNSAV---RYVPQLEPFQVFTPMLAKRVN--FGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTENYAPSIKPHVLSQLEPGIDCILDGEMMVWD 321          
BLAST of EWM27097.1 vs. NCBI_GenBank
Match: gi|568021295|gb|ETL95386.1| (hypothetical protein L917_06794 [Phytophthora parasitica])

HSP 1 Score: 194.126 bits (492), Expect = 2.258e-51
Identity = 120/323 (37.15%), Postives = 185/323 (57.28%), Query Frame = 0
Query:   39 ASQLLFADLCHRLERVTHEVGKRHRRLEILFPRPLVQALKGCSPYPLFRLLLPHIDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRA--TLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDKYGPMLTPHVIRCVEVE-QCILDGEVVGWD 358
            A  L F  LC  L+ V     K   +L++LF   L   + G   YPL RL+LP +D  R  Y +K+  +AK+Y+++LGL P  S+DAQKL  +  P+    +DS        D+  VL D++  +  +  S+   TL +++E+LDQL  A  + +R+ V  ++    SA EQKW++R+IL+D+KIGLR E++L F H  AM ++N T DL  VC  L +S+    R    ++  + F PMLA  ++    +   A++   F +E K+DGER+ CH  G +V+  SR+  +YT+ Y P + PHV+  +E    CILDGE++ WD
Sbjct:   10 ALGLSFTALCSVLKAV-EATRKNDSKLDLLFSPHLHSQVGGGDLYPLIRLVLPQLDRER-TYMLKEKKIAKIYIDVLGLAPI-SKDAQKLEHFNDPKI---VDSK----SVGDFAAVLFDVVLYQSARTKSKMQHTLKDVNELLDQLVLADSNAARKKVFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRELRNSAV---RYVPQLEPFQVFTPMLAKRVN--FGECISAINADAFVMEPKLDGERITCHVQGKEVQSISRNGINYTENYAPSIKPHVLSQLESGVDCILDGEMMVWD 317          
The following BLAST results are available for this feature:
BLAST of EWM27097.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109274|gb|EWM27097.1|0.000e+0100.00dna ligase 4 [Nannochloropsis gaditana][more]
gi|298714787|emb|CBJ25686.1|4.969e-5634.48DNA ligase, putative [Ectocarpus siliculosus][more]
gi|1173941518|gb|OQR90666.1|7.054e-5439.64DNA ligase [Achlya hypogyna][more]
gi|695375849|ref|XP_009515641.1|3.724e-5336.81hypothetical protein PHYSODRAFT_284249 [Phytophtho... [more]
gi|675189609|ref|XP_008903689.1|5.765e-5237.15hypothetical protein PPTG_10159 [Phytophthora para... [more]
gi|570988165|gb|ETP46650.1|5.995e-5237.15hypothetical protein F442_07141 [Phytophthora para... [more]
gi|570329754|gb|ETO77702.1|5.995e-5237.15hypothetical protein F444_07143 [Phytophthora para... [more]
gi|970636144|gb|KUF80868.1|1.175e-5137.11DNA ligase [Phytophthora nicotianae][more]
gi|301117706|ref|XP_002906581.1|1.681e-5136.53DNA ligase, putative [Phytophthora infestans T30-4... [more]
gi|568021295|gb|ETL95386.1|2.258e-5137.15hypothetical protein L917_06794 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3599rna3599Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications