rna3592, rna3592 (mRNA) Nannochloropsis gaditana

Overview
Namerna3592
Unique Namerna3592
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length423
Alignment locationCM002461.1:765827..767444 +

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Properties
Property NameValue
Productdtw domain containing protein
Orig transcript idgnl|cribi|Naga_100046g39.5149.mrna
Orig protein idgnl|cribi|Naga_100046g39.5149
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:765827..767444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100046g39gene3459Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3592rna3592-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27110.1cds3583Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3592 ID=rna3592|Name=rna3592|organism=Nannochloropsis gaditana|type=mRNA|length=423bp
ATGGCGGTGGTCCCCCCAATAAATAGCGTGTATAGCCCTTCTTGTGACGC
ACGGCTCGCGGAAGGGTGCATTCGCGGGCTTTACGTGGGGGCCCTGTGGG
GGGCATTCTTTCACCGCTATGATACAGTTCCATTACCGACGAAGGCCTCA
CGAGGACAGATTATGCTGCGAATATTTCGAACTCGGGCAGTGGGCGCATG
TAAGCATTCATTCCTCCTCGCAACTTTCCTGGGGTTGTACAGCGGATCCT
CGTGCGTGGCTGAGAAAACCATGGGACGCCGCAACTGGGCGACGAGTTTC
GTCGGGGGCTTAAGCGCGGGAGCCTTCGCAGGCCTCACGACAGGTCACCC
CCATCATGCCATGACATGGGGCGTAGGAACTGGCCTAGCAAGCATGATTG
TGTACGGGTTGCAAGGAGGTTGA
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protein sequence of rna3592

>rna3592-protein ID=rna3592-protein|Name=rna3592|organism=Nannochloropsis gaditana|type=polypeptide|length=327bp
MLTSSPPPPATTTYTPSISTPATDHIDTSASLQAYLAAPLPYAIDDWVKA
ACPSHGCTAEKRFYCAKCVCWVGVPAGVQVPRLRLPLEVNIIIADNRKKS
TAIQVGVVATESVRVWDTWTGGLEELAAEPWEVDETLVLFPSQDAVTLNA
MSFEELTVIKRVVVLDSRWNNTTTVLDHPGVRRLTKRVKLKNPPQESLCW
RYHSKGEGLLSSAEALYYFFKDYEWLTHRRVKAVHSVTESSGQNEDGEVM
LEEIMHIFRLNINVIKESYNKGARKNLPLPMEAAGKARIKAHRSKQRLEA
VAKKSKREILQKEGGVHHGSKEAIEDT
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mRNA from alignment at CM002461.1:765827..767444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3592 ID=rna3592|Name=rna3592|organism=Nannochloropsis gaditana|type=mRNA|length=1618bp|location=Sequence derived from alignment at CM002461.1:765827..767444+ (Nannochloropsis gaditana)
TAAAGACTACAGAGACGAGACGTCAAGGCATCGCTGAGGAGACTGGTTTG
CGGAGATTAACTGTGATCCCTGCCCCAAAGGCTAACAACTCAGCGAACAC
ACACTTTGTTATTGTGAATTAGAGAAGGCGGAGCACACATTGGGAGGATA
AACCACCTACAATCACCCTCAGGTCACTGCTCCAAGCGCCCTTCAAtgtt
aacctcctcaccccctccgcctgcaaCCACGACCTATACGCCGTCGATAT
CAACTCCAGCAACCGATCATATTGATACCAGCGCATCGTTGCAAGCCTAT
CTTGCTGCACCTTTGCCTTACGCTATCGATGATTGGGTGAAGGCTGCATG
TCCATCGCACGGCTGCACAGCAGAAAAACGCTTTTACTGTGCAAAGTGTG
TTTGCTGGGTAGGGGTTCCAGCCGGGGTGCAGGTACCGCGTTTGCGTCTG
CCCCTCGAGGTGAACATAATCATAGCAGACAATCGTAAAAAATCCACCGC
AATACAAGTCGGCGTGGTGGCGACGGAATCGGTTCGGGTTTGGGACACGT
GGACAGGAGGGCTCGAGGAGCTGGCTGCGGAGCCCTGGGAGGTAGATGAG
ACGCTGGTGCTTTTCCCATCTCAAGACGCAGTAACATTGAATGCTATGTC
ATTTGAGGAATTAACAGTAATAAAGCGAGTTGTAGTTCTCGATTCGCGGT
GGAACAACACAACCACGGTGCTAGACCACCCCGGGGTGAGGCGATTGACA
AAGCGGGTGAAGCTCAAGAATCCCCCCCAGGAATCGTTATGCTGGCGATA
TCACTCCAAGGGAGAAGGTCTGCTATCTTCTGCGGAAGCTTTGTATTATT
TTTTCAAGGACTATGAGTGGTTGACTCACAGACGAGTCAAAGCAGTACAT
TCTGTGACGGAAAGCTCCGGTCAAAACGAAGACGGAGAAGTCATGCTAGA
GGAGATTATGCATATTTTCCGATTAAATATCAATGTTATCAAAGAATCCT
ACAATAAAGGTGCGAGGAAGAACTTGCCATTGCCTATGGAAGCCGCAGGG
AAAGCACGCATCAAGGCGCACCGCAGCAAACAAAGGCTGGAGGCCGTCGC
AAAAAAATCCAAGAGGGAAATTCTtcagaaagagggaggagtacATCACG
GAAGCAAAGAAGCAATTGAAGATACATGACAAGTCTTCGATTTAGCTTAT
TTGTACATTCATTTGTGCCCGGGAGGCACCTCTGACCCGTCCTCGACCCT
TCCTTCATGCGTCCGCTAGCTCCATGAGCTCTAGCCAGCGGTCCTCCTTG
GCTGCGATCTCCGCCTCGATCTTCTCCAATCGCGACGCCCACTCTGCGAG
CTGACTGAAGCCAGCATTGGTCTTATGACCCTCGTCCAGCTTGCTCTGGT
ACTCCGCTGCCTGCTTTTGCAGGGTGCCAATGGCttgctccatgcccccc
aactccttcttctctttcccactCAGCCGTCTGGAGGCCGCCGTTTTCGC
ATCGCTTTGTCCTTTCCGCGTCCCCCCCAAGGTGGAGTCTTGCCATGCTG
AGCCTCCATGCGCCTtggcttctttctccatttccaGCCAGTCGCTGAAG
CTGCCCTGGAAGTCCCGC
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Coding sequence (CDS) from alignment at CM002461.1:765827..767444+

>rna3592 ID=rna3592|Name=rna3592|organism=Nannochloropsis gaditana|type=CDS|length=984bp|location=Sequence derived from alignment at CM002461.1:765827..767444+ (Nannochloropsis gaditana)
AtgttaacctcctcaccccctccgcctgcaaCCACGACCTATACGCCGTC
GATATCAACTCCAGCAACCGATCATATTGATACCAGCGCATCGTTGCAAG
CCTATCTTGCTGCACCTTTGCCTTACGCTATCGATGATTGGGTGAAGGCT
GCATGTCCATCGCACGGCTGCACAGCAGAAAAACGCTTTTACTGTGCAAA
GTGTGTTTGCTGGGTAGGGGTTCCAGCCGGGGTGCAGGTACCGCGTTTGC
GTCTGCCCCTCGAGGTGAACATAATCATAGCAGACAATCGTAAAAAATCC
ACCGCAATACAAGTCGGCGTGGTGGCGACGGAATCGGTTCGGGTTTGGGA
CACGTGGACAGGAGGGCTCGAGGAGCTGGCTGCGGAGCCCTGGGAGGTAG
ATGAGACGCTGGTGCTTTTCCCATCTCAAGACGCAGTAACATTGAATGCT
ATGTCATTTGAGGAATTAACAGTAATAAAGCGAGTTGTAGTTCTCGATTC
GCGGTGGAACAACACAACCACGGTGCTAGACCACCCCGGGGTGAGGCGAT
TGACAAAGCGGGTGAAGCTCAAGAATCCCCCCCAGGAATCGTTATGCTGG
CGATATCACTCCAAGGGAGAAGGTCTGCTATCTTCTGCGGAAGCTTTGTA
TTATTTTTTCAAGGACTATGAGTGGTTGACTCACAGACGAGTCAAAGCAG
TACATTCTGTGACGGAAAGCTCCGGTCAAAACGAAGACGGAGAAGTCATG
CTAGAGGAGATTATGCATATTTTCCGATTAAATATCAATGTTATCAAAGA
ATCCTACAATAAAGGTGCGAGGAAGAACTTGCCATTGCCTATGGAAGCCG
CAGGGAAAGCACGCATCAAGGCGCACCGCAGCAAACAAAGGCTGGAGGCC
GTCGCAAAAAAATCCAAGAGGGAAATTCTtcagaaagagggaggagtacA
TCACGGAAGCAAAGAAGCAATTGAAGATACATGA
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Synonyms
Publications