rna3590, rna3590 (mRNA) Nannochloropsis gaditana

Overview
Namerna3590
Unique Namerna3590
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1062
Alignment locationCM002461.1:763477..764331 -

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Properties
Property NameValue
ProductFrataxin-like protein
Orig transcript idgnl|cribi|Naga_100046g37.5127.mrna
Orig protein idgnl|cribi|Naga_100046g37.5127
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:763477..764331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100046g37gene3457Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3590rna3590-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27088.1cds3581Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3590 ID=rna3590|Name=rna3590|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp
ATGGCCTGTAAAGTCACCATTTCGCTTCTTGTGCTTCTCTCGGCAGGCCA
GGCCTTCAATCTACGACCTCCCGGGGTCTCTCCCAATAAACCTGGAACTT
GGGCTCCTGGCGTTTGCTTGAGGCCAACATGGAGCTCGCATATACCTCGC
AGCGCCTCCTCAACTCCCCTCCTACCTTTTGACGGCTTCCAACCTCCTCT
GAAAGACCCGGTGGCTGCATACGATAGCGCCGTAAAGCAGGGCGAGAAGA
AAGCCAATGAACCAGCTCCTATCATTTTTTTATTGGGCATCCAGGCCGGT
TTGCAAGTGGGAATCGGGGCTGCGATGGCTGTGGCCACTATGGCGGGCGT
TCCTGGTATTCAGGCAAAGGATCCTGGCCTTGCCAAGCTAATTTACGGCT
TTTGTGGCCTCCCTTGCGGGCTACTGATGACAGCAACTATGGGGACCATG
CTCTTCACGGGGAATACTGCCGTCGTATCTGTGGCGCTGATGGAGAAAAA
GATCAAGTTACAGCAGCTAGTCAAGACGTGGGTATGGTCCTATTTAGGTA
ACATGGTGGGCGCGGGCTTCCTCGCTGCTTTGTGCACATACGCCGGTGTA
TTTTCAAGCAGTGCAGCAGCCATTGCCTCCGTAGCCGCATCGAAGACAGC
CATGCCGTTTGGAGTGGCCGTGGCGCGAGGCATCTTGTGTAATTGGCTTG
TTACGACCGCCGTTTGGATCGCCCAGGCTGCCGCCGACCTCGTGAGCAAA
GCCACGGCCATCGTCCTGATAATCACCATCTTTGCCTCTCTGGGATTTGA
ACACTCCGTGGCCAACATGTTTGTCGGACCCTTCGGAGCACTGAATGGCG
GACCATCCTTTCTTCACTTTTTTCTGCGTAATCTGATCCCTGTGACCATT
GGAAATATCATAGCGGGGGTGGTAATGGTCGCATTTGCGAATTATCTATC
TTTTGAGACTGAGTTTGGACTTCGAGGTGCTTCTGGAAGCTGCGTGAGAA
GGGGGTGTCAAAAAAGGGAGATGTCAACGGAAGTAGTTGCTTGCATTTTT
ACCTTTCAATAA
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protein sequence of rna3590

>rna3590-protein ID=rna3590-protein|Name=rna3590|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp
MIARRFSILTRSLARSCKSMTSISVTQVSQAVAGAARPSKALWGAYRKPL
SESQQQVCPRSPFYCAQATLFSHFVSSSSRTNAEEVQNQGGFPTERDFHV
VADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPN
RQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIR
TRT
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mRNA from alignment at CM002461.1:763477..764331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3590 ID=rna3590|Name=rna3590|organism=Nannochloropsis gaditana|type=mRNA|length=855bp|location=Sequence derived from alignment at CM002461.1:763477..764331- (Nannochloropsis gaditana)
ATGATTGCCCGAAGGTTTTCCATACTCACTCGTTCTCTTGCGAGATCGTG
CAAGAGCATGACAAGTATATCGGTGACACAAGTATCGCAGGCCGTAGCAG
GGGCGGCTCGCCCCAGCAAGGCTCTATGGGGCGCTTATAGGAAGCCTCTG
AGCGAGTCGCAGCAGCAGGTCTGCCCCCGCTCTCCTTTCTACTGTGCCCA
GGCGACGCTTTTCTCCCATTTTGTGTCTTCTTCCTCCCGAACAAATGCTG
AAGAGGTACAAAATCAAGGTGGTTTTCCCACGGAGCGCGATTTTCACGTG
GTGGCGGATGAGACTCTGGACGAGGTTCAAGCTTCGGTGGATGCCTTGGA
GGACGTCGTGGAAGATTATGAGGCGAATCTATCGGTAATTTGAGCAGGAA
ATTGATTTATATTGGGGTTTGTGAGTGTTCGTGAGGAGTATACACGCTCT
TAACTGCTTCATTTAAGGGCACAAATTATGTAACATTTGTCAGTTATCCA
GCCATTCTCAATTTGCGAAGCATCGACCGTTGAATAGCTGAAATACATGC
AATTCCGGTGGGGCGTCAAGCCATGTCCACTCATCACGCTATCCTCACAC
GCCCGCCTTTCGTCCCTCCCTTCACAGCAAGGAGTCCTCAACATTGGAAT
GGGCCCGCACGGGACCTGGGTGCTCAACAAACAAACTCCCAACCGCCAGA
TCTGGTGGTCTTCGCCCTTGAGTGGTCCTTTACGCTTTGAGTACGACGTT
GCGACAAAGATGTGGGTGACAACGCGGGACAGGCGGGAGCTTTTCGCGTT
GCTGAGAGAAGAGGTCAAAAGGGTGGCGGGGATTGACATAAGGACTCGAA
CATAG
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Coding sequence (CDS) from alignment at CM002461.1:763477..764331-

>rna3590 ID=rna3590|Name=rna3590|organism=Nannochloropsis gaditana|type=CDS|length=1224bp|location=Sequence derived from alignment at CM002461.1:763477..764331- (Nannochloropsis gaditana)
CAAGGAGTCCTCAACATTGGAATGGGCCCGCACGGGACCTGGGTGCTCAA
CAAACAAACTCCCAACCGCCAGATCTGGTGGTCTTCGCCCTTGAGTGGTC
CTTTACGCTTTGAGTACGACGTTGCGACAAAGATGTGGGTGACAACGCGG
GACAGGCGGGAGCTTTTCGCGTTGCTGAGAGAAGAGGTCAAAAGGGTGGC
GGGGATTGACATAAGGACTCGAACATAGATGATTGCCCGAAGGTTTTCCA
TACTCACTCGTTCTCTTGCGAGATCGTGCAAGAGCATGACAAGTATATCG
GTGACACAAGTATCGCAGGCCGTAGCAGGGGCGGCTCGCCCCAGCAAGGC
TCTATGGGGCGCTTATAGGAAGCCTCTGAGCGAGTCGCAGCAGCAGGTCT
GCCCCCGCTCTCCTTTCTACTGTGCCCAGGCGACGCTTTTCTCCCATTTT
GTGTCTTCTTCCTCCCGAACAAATGCTGAAGAGGTACAAAATCAAGGTGG
TTTTCCCACGGAGCGCGATTTTCACGTGGTGGCGGATGAGACTCTGGACG
AGGTTCAAGCTTCGGTGGATGCCTTGGAGGACGTCGTGGAAGATTATGAG
GCGAATCTATCGCAAGGAGTCCTCAACATTGGAATGGGCCCGCACGGGAC
CTGGGTGCTCAACAAACAAACTCCCAACCGCCAGATCTGGTGGTCTTCGC
CCTTGAGTGGTCCTTTACGCTTTGAGTACGACGTTGCGACAAAGATGTGG
GTGACAACGCGGGACAGGCGGGAGCTTTTCGCGTTGCTGAGAGAAGAGGT
CAAAAGGGTGGCGGGGATTGACATAAGGACTCGAACATAGATGATTGCCC
GAAGGTTTTCCATACTCACTCGTTCTCTTGCGAGATCGTGCAAGAGCATG
ACAAGTATATCGGTGACACAAGTATCGCAGGCCGTAGCAGGGGCGGCTCG
CCCCAGCAAGGCTCTATGGGGCGCTTATAGGAAGCCTCTGAGCGAGTCGC
AGCAGCAGGTCTGCCCCCGCTCTCCTTTCTACTGTGCCCAGGCGACGCTT
TTCTCCCATTTTGTGTCTTCTTCCTCCCGAACAAATGCTGAAGAGGTACA
AAATCAAGGTGGTTTTCCCACGGAGCGCGATTTTCACGTGGTGGCGGATG
AGACTCTGGACGAGGTTCAAGCTTCGGTGGATGCCTTGGAGGACGTCGTG
GAAGATTATGAGGCGAATCTATCG
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Synonyms
Publications