EWM27088.1, cds3581 (CDS) Nannochloropsis gaditana

Overview
NameEWM27088.1
Unique Namecds3581
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:763948..764331 -
Alignment locationCM002461.1:763477..763704 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27088.1
ProductFrataxin-like protein
Orig transcript idgnl|cribi|Naga_100046g37.5127.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:763948..764331 -
CM002461.1supercontigCM002461.1:763477..763704 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0004322ferroxidase activity
GO:0008199ferric iron binding
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0055114oxidation-reduction process
GO:0016226iron-sulfur cluster assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR020895Frataxin_CS
IPR017789Frataxin
IPR002908Frataxin/CyaY
Homology
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|585109265|gb|EWM27088.1| (Frataxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 421.779 bits (1083), Expect = 1.922e-149
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
Query:    1 MIARRFSILTRSLARSCKSMTSISVTQVSQAVAGAARPSKALWGAYRKPLSESQQQVCPRSPFYCAQATLFSHFVSSSSRTNAEEVQNQGGFPTERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRTRT 203
            MIARRFSILTRSLARSCKSMTSISVTQVSQAVAGAARPSKALWGAYRKPLSESQQQVCPRSPFYCAQATLFSHFVSSSSRTNAEEVQNQGGFPTERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRTRT
Sbjct:    1 MIARRFSILTRSLARSCKSMTSISVTQVSQAVAGAARPSKALWGAYRKPLSESQQQVCPRSPFYCAQATLFSHFVSSSSRTNAEEVQNQGGFPTERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRTRT 203          
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|570983234|gb|ETP43103.1| (hypothetical protein F442_10037 [Phytophthora parasitica P10297])

HSP 1 Score: 133.65 bits (335), Expect = 3.446e-36
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 0
Query:   94 TERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRT 201
            TE +F  +ADETL ++Q+ +D +E+++E+ +   SQGVL I +G HGTWV+N+Q PNRQIWWSSP+SGP R+EYD  +  WV TRDR EL  LLR E+    GI+I T
Sbjct:   62 TENEFMELADETLHDIQSWLDGIEEMIEESDIMFSQGVLKIDLGEHGTWVINRQVPNRQIWWSSPVSGPRRYEYDAESGHWVNTRDRGELMELLRTEILDKTGIEIYT 169          
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|675168671|ref|XP_008893220.1| (hypothetical protein PPTG_01604 [Phytophthora parasitica INRA-310] >gi|566022311|gb|ETI45222.1| hypothetical protein F443_10129 [Phytophthora parasitica P1569] >gi|567988359|gb|ETL38637.1| hypothetical protein L916_09826 [Phytophthora parasitica] >gi|568017560|gb|ETL91737.1| hypothetical protein L917_09744 [Phytophthora parasitica] >gi|568047966|gb|ETM45034.1| hypothetical protein L914_09797 [Phytophthora parasitica] >gi|568106792|gb|ETN21422.1| hypothetical protein PPTG_01604 [Phytophthora parasitica INRA-310] >gi|570325939|gb|ETO73887.1| hypothetical protein F444_10226 [Phytophthora parasitica P1976] >gi|570949779|gb|ETP15036.1| hypothetical protein F441_10070 [Phytophthora parasitica CJ01A1] >gi|970631717|gb|KUF78234.1| Frataxin [Phytophthora nicotianae] >gi|970650874|gb|KUF89802.1| hypothetical protein AM588_10002428 [Phytophthora nicotianae])

HSP 1 Score: 132.88 bits (333), Expect = 6.255e-36
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 0
Query:   94 TERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRT 201
            TE +F  +ADETL ++Q+ +D +E+++E+ +   SQGVL I +G HGTWV+N+Q PNRQIWWSSP+SGP R+EYD  +  WV TRDR EL  LLR E+    GI+I T
Sbjct:   62 TENEFMELADETLHDIQSWLDGIEEMLEESDIMFSQGVLKIDLGEHGTWVINRQVPNRQIWWSSPVSGPRRYEYDAESGHWVNTRDRGELMELLRTEILDKTGIEIYT 169          
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|567959620|gb|ETK85189.1| (hypothetical protein L915_09916 [Phytophthora parasitica])

HSP 1 Score: 132.88 bits (333), Expect = 7.046e-36
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 0
Query:   94 TERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRT 201
            TE +F  +ADETL ++Q+ +D +E+++E+ +   SQGVL I +G HGTWV+N+Q PNRQIWWSSP+SGP R+EYD  +  WV TRDR EL  LLR E+    GI+I T
Sbjct:   62 TENEFMELADETLHDIQSWLDGIEEMLEESDIMFSQGVLKIDLGEHGTWVINRQVPNRQIWWSSPVSGPRRYEYDAESGHWVNTRDRGELMELLRTEILDKTGIEIYT 169          
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|301120466|ref|XP_002907960.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102991|gb|EEY61043.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 130.954 bits (328), Expect = 1.398e-35
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 0
Query:   95 ERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRT 201
            E +F  +ADETL  +Q+ +D +E+++E+ +   SQGVL I +G HGTWV+N+Q PNRQIWWSSP+SGP R+EYD  +  WV TRD+ EL  LLR E+  V GI+I T
Sbjct:   25 ENEFMELADETLHGIQSWLDGIEEMLEESDIMFSQGVLKIDLGEHGTWVINRQVPNRQIWWSSPVSGPRRYEYDAESGHWVNTRDKGELMELLRAEILDVTGIEIYT 131          
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|695414100|ref|XP_009526214.1| (hypothetical protein PHYSODRAFT_354548 [Phytophthora sojae] >gi|348677339|gb|EGZ17156.1| hypothetical protein PHYSODRAFT_354548 [Phytophthora sojae])

HSP 1 Score: 131.339 bits (329), Expect = 3.306e-35
Identity = 58/106 (54.72%), Postives = 78/106 (73.58%), Query Frame = 0
Query:   94 TERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDI 199
            TE +F  +ADETL ++Q+ +D +E+++E+ +   SQGVL I +G HGTWV+N+Q PNRQIWWSSP+SGP R+EYD  +  WV TRDR EL  LLR E+    GI+I
Sbjct:   63 TEHEFMELADETLHDIQSWLDGIEEMLEESDVMFSQGVLKIDLGDHGTWVINRQVPNRQIWWSSPISGPRRYEYDGESGNWVNTRDRGELVELLRSEILDATGIEI 168          
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|1210520499|dbj|GAX20657.1| (hypothetical protein FisN_32Hu042 [Fistulifera solaris])

HSP 1 Score: 125.176 bits (313), Expect = 1.811e-33
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = 0
Query:   92 FPTERDFHVVADETLDEVQASVD-ALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRV 194
            F TE +FH VADE L+ +Q +VD  LE    DYE NL+ GVL + M PHGTWVLNKQTPNRQIWWSSPLSGP RFE+D   K+W +T+D   L   L +E+  V
Sbjct:    9 FETEAEFHNVADEALETIQDTVDEMLEPKNIDYEINLASGVLTLKMRPHGTWVLNKQTPNRQIWWSSPLSGPKRFEFDPKDKLWFSTKDGLNLGRTLMQEIHHV 112          
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|299115807|emb|CBN74370.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 126.716 bits (317), Expect = 2.233e-32
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 0
Query:   86 VQNQGGFPT---ERDFHVVADETLDEVQASVD-ALEDVVED-YEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRD-RRELFALLREEVKRVAGIDI 199
            +Q QG   T   E++FH VADE L+E+  +V+ ALE+  ED ++ N+SQGVLNI +G  GTWVLNKQ+PNRQIWWSSP+SGP+RFEY    K W+ TRD   EL  +L  E+    G+ +
Sbjct:  142 MQRQGMSSTTMSEQEFHSVADEALEEIHDAVEEALEEGFEDDFDCNMSQGVLNIAVGDRGTWVLNKQSPNRQIWWSSPISGPMRFEYHEEAKRWLNTRDGETELRVILATEMSEKCGVSV 261          
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|1214698702|gb|OWZ11662.1| (Iron donor protein CyaY [Phytophthora megakarya])

HSP 1 Score: 123.635 bits (309), Expect = 2.763e-32
Identity = 64/147 (43.54%), Postives = 87/147 (59.18%), Query Frame = 0
Query:   58 CPRSPFYCAQATLFSHFVSSSSRTNAEEVQNQGGFP---TERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRT 201
             PR   + A    F    +   R N  +V      P   TE +F  +ADETL ++Q+ +D +E+++E+ +   S  VL I +G HGTWV+N+Q PNRQIWWSSP+SGP R+E D  +  WV TRDR EL  LLR E+    GI+I T
Sbjct:   19 APRFKKFSALPYFFRPNSAMMMRRNPLQVAPFSTAPPTMTENEFMELADETLHDIQSWLDGIEEMLEESDIMFSVRVLKIDLGDHGTWVINRQVPNRQIWWSSPISGPRRYELDAESGHWVNTRDRGELTELLRTEILEATGIEIYT 165          
BLAST of EWM27088.1 vs. NCBI_GenBank
Match: gi|953497860|emb|CEG40620.1| (iron donor protein [Plasmopara halstedii])

HSP 1 Score: 120.939 bits (302), Expect = 6.207e-32
Identity = 54/108 (50.00%), Postives = 77/108 (71.30%), Query Frame = 0
Query:   94 TERDFHVVADETLDEVQASVDALEDVVEDYEANLSQGVLNIGMGPHGTWVLNKQTPNRQIWWSSPLSGPLRFEYDVATKMWVTTRDRRELFALLREEVKRVAGIDIRT 201
            TE +F  +AD+TL ++Q+ +D +E+++E+ +   S GVL I +G +GTWV+N+Q PNRQIWWSSP+SGP R+EYD   + WV TRD+ EL  LL  E+    GI+I T
Sbjct:    2 TEHEFMELADKTLFDIQSWLDGIEEMLEECDVMFSVGVLKIDLGEYGTWVINRQVPNRQIWWSSPISGPRRYEYDAERRAWVNTRDKGELKELLHTEILEATGIEIYT 109          
The following BLAST results are available for this feature:
BLAST of EWM27088.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109265|gb|EWM27088.1|1.922e-149100.00Frataxin-like protein [Nannochloropsis gaditana][more]
gi|570983234|gb|ETP43103.1|3.446e-3654.63hypothetical protein F442_10037 [Phytophthora para... [more]
gi|675168671|ref|XP_008893220.1|6.255e-3654.63hypothetical protein PPTG_01604 [Phytophthora para... [more]
gi|567959620|gb|ETK85189.1|7.046e-3654.63hypothetical protein L915_09916 [Phytophthora para... [more]
gi|301120466|ref|XP_002907960.1|1.398e-3554.21conserved hypothetical protein [Phytophthora infes... [more]
gi|695414100|ref|XP_009526214.1|3.306e-3554.72hypothetical protein PHYSODRAFT_354548 [Phytophtho... [more]
gi|1210520499|dbj|GAX20657.1|1.811e-3358.65hypothetical protein FisN_32Hu042 [Fistulifera sol... [more]
gi|299115807|emb|CBN74370.1|2.233e-3252.50conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214698702|gb|OWZ11662.1|2.763e-3243.54Iron donor protein CyaY [Phytophthora megakarya][more]
gi|953497860|emb|CEG40620.1|6.207e-3250.00iron donor protein [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3590rna3590Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications