rna3588, rna3588 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3588
Unique Name	rna3588
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1400
Alignment location	CM002461.1:757768..759712 -

Link to JBrowse

Properties


Property Name	Value
Product	Eukaryotic rRNA processing
Orig transcript id	gnl\|cribi\|Naga_100046g35.5153.mrna
Orig protein id	gnl\|cribi\|Naga_100046g35.5153
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:757768..759712 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g35	gene3455	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3588	rna3588-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27114.1	cds3579	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:757768..759712-
coding sequence from alignment at CM002461.1:757768..759712-

mRNA sequence

>rna3588 ID=rna3588|Name=rna3588|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp
CATTCGACGTCCTCAACGATTCCTACTCAATCTCGTTGCGCACAGGAATG
ATGTCCAAGAGCCTAATTATGCTTGGCTTATTGAGCCCAACAGCCTTTGC
TTTTGTCCCCAAGCTTTCAACAAATGTGCTCTCCCGGGCTATTTCCTCAC
ATGCACGCAAGAACCTGGTCAAGGCTTCTGCTGTGGATTACAAAACCGCA
TTCATGTTCCCTGGCCAGGGGGCCCAGTATGTGGGAATGGGAGCACAGGT
CAGCGAGGAGGTGCCCGCAGCCAAAGCTCTGTTTGAAAAAGCCAGCGAGA
TCCTAGGATACGATCTACTGGATCGAGCAATGAATGGACCGAAGGACTTA
TTGGACTCCACGGCGGTAAGCCAGCCCGCCATCTTCGTCGCCTCGGCTGC
CGCAGTCGAGAAACTTCGGGCCACAGAGGGCGAAGACGCGGCGAATGCCG
CCACCGTCGCGATGGGTCTATCTTTAGGGGAATACTCGGCATTGTGTTAC
GCAGGAGCCTTTTCATTCGAGGACGGTGTGCGCCTGACAAAGGCCAGAGG
GGAAGCCATGCAAGCCGCCGCCGACCTGGTGGACACGACCATGGTAAGCG
TCATCGGTTTGGAGGCGGACAAGGTGAACGAGCTTTGTGCCGCAGCTTCC
TCCAAATCTGGAGAGAAGATACAAATTGCCAACTACCTGTGCCCTGGGAA
CTACGCGGTATCTGGAAGCTTGAAAGCGGCGCAGGTGCTGGAGGAGATCG
CCAAGCCGGAGTTCGGGGCCCGAATGACAGTGCGTCTGGCCGTGGCCGGC
GCCTTCCACACGGAGTACATGGCTCCCGCCCTGGAAAAACTAAAGGAGGT
CTTGGCCAAGACAGAGTTCAAGACGCCGCGTATCCCAGTCATTTCCAATG
TGGATGGGAAGCCCCATTCGGACCCTGAGGAAATCAAGGCCATTCTCGCC
AAACAGGTGACTTCGCCGGTGCAGTGGGAGACCACCATGAACGACCTGGT
CAAAGGTGGGCTTGAAACGGGCTATGAACTGGGGCCTGGCAAGGTTTGTG
CCGGGATTCTCAAGCGCATCGACCGAAAAGCGAAGATGGTGAACATCGAG
GCCTGAGCCGGCGACCGGGAGCAAACTGGAAATCGTTTGCGGGAGGATGA
GGAACAAGCTTGGAAGGATAAGCAGTGGACTAATTAAGTGTGCTCTCTGT
TTTTTCTGTGTCGTCTAAGTGAAGCCTGGTGTGCTAGTGACATGTGCTGT
AAGCAAGGGGGCATCCCCCTGGTTGCCCGTCGTCGGGTCCTTTCGGTGAG
CTGGCCACCATCAACAAAGCAGTCCGAGTGCGTCAAGAATAGCCGAGTAT
ACTTTTGTTTGCGCTACACTTCATGTTCCTTTTGGCTTAGGGAAATGCCT

protein sequence of rna3588

>rna3588-protein ID=rna3588-protein|Name=rna3588|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MGKKRTSKARTGALDPDELLALEEEDEFAKELAAAEEMEREQALSRTIDS
TGNGDFLDEDGDKDEDEDEEALQPRPRVFINNQKGLLQMLGQIESENGSR
PWPETMDVCQFPLLLNDVHDDLVRETAFYRVALAGIKEARARLVQYQVPY
KRPEDFFCDMLKSDDHMARVKDRLLFEQKKMTAVEERRKQQENRKFSKAL
KSHKAKEKTEDKKKTLEAVNQWKKDRAQRGGGQGLLEDDDGFDRILAGRS
PGGRFGAGAAGRGEGGGRHDNSRRLSKDKKYGFGGPKRKLKQADTKSLND
FSTFNPKKGKTFGSRGGRGGKKGGGGAKKGGNRPGKTTRQKMRSKR

mRNA from alignment at CM002461.1:757768..759712-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3588 ID=rna3588|Name=rna3588|organism=Nannochloropsis gaditana|type=mRNA|length=1945bp|location=Sequence derived from alignment at CM002461.1:757768..759712- (Nannochloropsis gaditana)
TTTTATTACTCTGGTTGCTCAATTGGACTTATACTTGAATAAGCGGTCTT
CGTGGGCTTCCTTTTCATGCACAAAGCCTTCATGCGCGCGGAGGATACTT
TACACCGTGCATGACGATTCGATGGCCCACGGGTAACTCAGTATTTTATT
GTACCACTGCCTTTTTTCTTGAGCCCCCGATCCATATTTTCGTATAAAAT
CTTTTCTCATATTTATCCATTTTTCCGTCTTGTAGTTTATTTATGGGAAA
GAAGCGAACGTCTAAGGCCCGGACAGGGGCCTTGGATCCCGATGAGCTCC
TGGCCCTTGAAGAGGAGGACGAATTTGCAAAAGAGCTTGCCGCAGCAGAG
GAAATGGAACGCGAGCAAGCACTATCACGTACGATCGATAGCACCGGAAA
TGGAGACTTTTTGGATGAAGATGGCGACAAAGACGAGGACGAGGACGAGG
AAGCTTTACAACCTCGGCCCAGAGTGTTTATCAACAATCAGAAAGGGCTA
CTGCAAATGTTGGGGCAGATCGAAAGCGAGAACGGGTCACGACCCTGGCC
TGAGACTATGGATGTCTGTCAGTTTCCATTACTCTTAAACGATGTGCATG
ATGATTTGGTGCGGGAGACCGCTTTCTATCGCGTGGCGTTGGCTGGTATC
AAGGAGGCACGCGCGCGGCTGGTTCAATACCAAGTTCCTTATAAGCGCCC
CGAGGATTTTTTCTGTGATATGCTTAAAAGTGACGATCACATGGCCCGGG
TAAGTTTTGTGGGATCGGTGGGAAGAGTTCCGATCGTCGAGGGTCTTGCA
GGCGTGCCTCACATGTCATCAACGCAGAAGTGGTGTTGACTCGTGGTGTT
GGTATGCCATACGCGAGCCTGGGCTTAGGCGCGAATGAATGACTGATCGT
TATGCGTCTTTCTTTTGGTAAATAATATCACAGGTAAAAGATCGGCTCTT
GTTTGAGCAGAAGAAGATGACAGCCGTAGAGGAGCGACGTAAGCAACAGG
AAAATCGAAAATTCAGTAAAGCGCTAAAGTCGCACAAGGCAAAGGAGAAA
ACAGAGGACAAGAAGAAAACTTTGGAGGCAGTAAATCAATGGAAAAAGGA
CAGGGCTCAACGGTACGTGGAGGGTTTGCATCGGGTCGGAGGGGATGAAA
AGTGAAGGGAGTAGGTGCAAAACACGAGGAGGGCATCAGGAGGGTGGATA
GATGCTGTGAAAAGACACGACCGAGCATGCCTTATACATTTTTACCACGT
GCTTTTCTTTCACAACCACAGTGGCGGTGGGCAGGGGCTATTAGAGGACG
ACGACGGTTTCGACAGAATCCTGGCAGGGCGGTCCCCGGGGGGACGCTTC
GGTGCCGGAGCGGCCGGTCGCGGGGAAGGAGGCGGGAGGCATGACAACAG
TCGTCGATTGTCTAAGGATAAAAAGTATGGCTTTGGCGGGCCCAAGCGTA
AACTCAAGCAGGCGGACACGAAAAGTCTTAATGATTTTTCCACCTTCAAT
CCTAAGAAGGGCAAGACCTTCGGCTCCAGAGGCGGGAGGGGCGGGAAGAA
AGGTGGAGGTGGGGCCAAAAAGGGTGGCAATCGACCAGGGAAGACAACGC
GACAGAAAATGCGTTCGAAGCGTTGATGCGTGGTCAGATCAGAAGGATAT
CGAACCGTACTGTAATTCAAGATCCAAATGAAAGTAAAACGAAAAATCGA
GCTCTTCAGGTCTCACTTTTGAGTCTTTTCTGGTGCATCAAAGCTAGTCA
GGACGTAAAACGGCGAAAAAAGTCGACCGCTTCCTACTTGATGGGGTGAC
AAACAAGATGTCGTTCAGGCTTCTTTTTCGACGTGCAGGGGAGAGCATTA
TGCGGACATCACCGACCTCCTGACCATGCGGCATTGTTCGGGACCAAAGG
AAGTCTAGATTGAGGAAAAAGCAGCAAAATCATGACCCAGCCTAC

Coding sequence (CDS) from alignment at CM002461.1:757768..759712-

>rna3588 ID=rna3588|Name=rna3588|organism=Nannochloropsis gaditana|type=CDS|length=3123bp|location=Sequence derived from alignment at CM002461.1:757768..759712- (Nannochloropsis gaditana)
TGGCGGTGGGCAGGGGCTATTAGAGGACGACGACGGTTTCGACAGAATCC
TGGCAGGGCGGTCCCCGGGGGGACGCTTCGGTGCCGGAGCGGCCGGTCGC
GGGGAAGGAGGCGGGAGGCATGACAACAGTCGTCGATTGTCTAAGGATAA
AAAGTATGGCTTTGGCGGGCCCAAGCGTAAACTCAAGCAGGCGGACACGA
AAAGTCTTAATGATTTTTCCACCTTCAATCCTAAGAAGGGCAAGACCTTC
GGCTCCAGAGGCGGGAGGGGCGGGAAGAAAGGTGGAGGTGGGGCCAAAAA
GGGTGGCAATCGACCAGGGAAGACAACGCGACAGAAAATGCGTTCGAAGC
GTTGAGTAAAAGATCGGCTCTTGTTTGAGCAGAAGAAGATGACAGCCGTA
GAGGAGCGACGTAAGCAACAGGAAAATCGAAAATTCAGTAAAGCGCTAAA
GTCGCACAAGGCAAAGGAGAAAACAGAGGACAAGAAGAAAACTTTGGAGG
CAGTAAATCAATGGAAAAAGGACAGGGCTCAACGATGGGAAAGAAGCGAA
CGTCTAAGGCCCGGACAGGGGCCTTGGATCCCGATGAGCTCCTGGCCCTT
GAAGAGGAGGACGAATTTGCAAAAGAGCTTGCCGCAGCAGAGGAAATGGA
ACGCGAGCAAGCACTATCACGTACGATCGATAGCACCGGAAATGGAGACT
TTTTGGATGAAGATGGCGACAAAGACGAGGACGAGGACGAGGAAGCTTTA
CAACCTCGGCCCAGAGTGTTTATCAACAATCAGAAAGGGCTACTGCAAAT
GTTGGGGCAGATCGAAAGCGAGAACGGGTCACGACCCTGGCCTGAGACTA
TGGATGTCTGTCAGTTTCCATTACTCTTAAACGATGTGCATGATGATTTG
GTGCGGGAGACCGCTTTCTATCGCGTGGCGTTGGCTGGTATCAAGGAGGC
ACGCGCGCGGCTGGTTCAATACCAAGTTCCTTATAAGCGCCCCGAGGATT
TTTTCTGTGATATGCTTAAAAGTGACGATCACATGGCCCGGTGGCGGTGG
GCAGGGGCTATTAGAGGACGACGACGGTTTCGACAGAATCCTGGCAGGGC
GGTCCCCGGGGGGACGCTTCGGTGCCGGAGCGGCCGGTCGCGGGGAAGGA
GGCGGGAGGCATGACAACAGTCGTCGATTGTCTAAGGATAAAAAGTATGG
CTTTGGCGGGCCCAAGCGTAAACTCAAGCAGGCGGACACGAAAAGTCTTA
ATGATTTTTCCACCTTCAATCCTAAGAAGGGCAAGACCTTCGGCTCCAGA
GGCGGGAGGGGCGGGAAGAAAGGTGGAGGTGGGGCCAAAAAGGGTGGCAA
TCGACCAGGGAAGACAACGCGACAGAAAATGCGTTCGAAGCGTTGAGTAA
AAGATCGGCTCTTGTTTGAGCAGAAGAAGATGACAGCCGTAGAGGAGCGA
CGTAAGCAACAGGAAAATCGAAAATTCAGTAAAGCGCTAAAGTCGCACAA
GGCAAAGGAGAAAACAGAGGACAAGAAGAAAACTTTGGAGGCAGTAAATC
AATGGAAAAAGGACAGGGCTCAACGATGGGAAAGAAGCGAACGTCTAAGG
CCCGGACAGGGGCCTTGGATCCCGATGAGCTCCTGGCCCTTGAAGAGGAG
GACGAATTTGCAAAAGAGCTTGCCGCAGCAGAGGAAATGGAACGCGAGCA
AGCACTATCACGTACGATCGATAGCACCGGAAATGGAGACTTTTTGGATG
AAGATGGCGACAAAGACGAGGACGAGGACGAGGAAGCTTTACAACCTCGG
CCCAGAGTGTTTATCAACAATCAGAAAGGGCTACTGCAAATGTTGGGGCA
GATCGAAAGCGAGAACGGGTCACGACCCTGGCCTGAGACTATGGATGTCT
GTCAGTTTCCATTACTCTTAAACGATGTGCATGATGATTTGGTGCGGGAG
ACCGCTTTCTATCGCGTGGCGTTGGCTGGTATCAAGGAGGCACGCGCGCG
GCTGGTTCAATACCAAGTTCCTTATAAGCGCCCCGAGGATTTTTTCTGTG
ATATGCTTAAAAGTGACGATCACATGGCCCGGTGGCGGTGGGCAGGGGCT
ATTAGAGGACGACGACGGTTTCGACAGAATCCTGGCAGGGCGGTCCCCGG
GGGGACGCTTCGGTGCCGGAGCGGCCGGTCGCGGGGAAGGAGGCGGGAGG
CATGACAACAGTCGTCGATTGTCTAAGGATAAAAAGTATGGCTTTGGCGG
GCCCAAGCGTAAACTCAAGCAGGCGGACACGAAAAGTCTTAATGATTTTT
CCACCTTCAATCCTAAGAAGGGCAAGACCTTCGGCTCCAGAGGCGGGAGG
GGCGGGAAGAAAGGTGGAGGTGGGGCCAAAAAGGGTGGCAATCGACCAGG
GAAGACAACGCGACAGAAAATGCGTTCGAAGCGTTGAGTAAAAGATCGGC
TCTTGTTTGAGCAGAAGAAGATGACAGCCGTAGAGGAGCGACGTAAGCAA
CAGGAAAATCGAAAATTCAGTAAAGCGCTAAAGTCGCACAAGGCAAAGGA
GAAAACAGAGGACAAGAAGAAAACTTTGGAGGCAGTAAATCAATGGAAAA
AGGACAGGGCTCAACGATGGGAAAGAAGCGAACGTCTAAGGCCCGGACAG
GGGCCTTGGATCCCGATGAGCTCCTGGCCCTTGAAGAGGAGGACGAATTT
GCAAAAGAGCTTGCCGCAGCAGAGGAAATGGAACGCGAGCAAGCACTATC
ACGTACGATCGATAGCACCGGAAATGGAGACTTTTTGGATGAAGATGGCG
ACAAAGACGAGGACGAGGACGAGGAAGCTTTACAACCTCGGCCCAGAGTG
TTTATCAACAATCAGAAAGGGCTACTGCAAATGTTGGGGCAGATCGAAAG
CGAGAACGGGTCACGACCCTGGCCTGAGACTATGGATGTCTGTCAGTTTC
CATTACTCTTAAACGATGTGCATGATGATTTGGTGCGGGAGACCGCTTTC
TATCGCGTGGCGTTGGCTGGTATCAAGGAGGCACGCGCGCGGCTGGTTCA
ATACCAAGTTCCTTATAAGCGCCCCGAGGATTTTTTCTGTGATATGCTTA
AAAGTGACGATCACATGGCCCGG

Synonyms

Publications