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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100046g29.5152.mrna |
| Orig protein id | gnl|cribi|Naga_100046g29.5152 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:747154..749073 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3582 ID=rna3582|Name=rna3582|organism=Nannochloropsis gaditana|type=mRNA|length=234bp
ATGACAATAGCGGACGATGCAAATATTCCATGGATCGTGGTCCCTCTTGT
TGTCTTGCGTCCAATCGGTGCCATACACTTATTACTTCCGTTGAGGGGTG
TGGGTCGGCGAAGAAATGCAACCAGGGTACAAAGACATGAATTGGATCGG
CTCATTTCAGCCAGTACAGCTCTGGCTTCTGGCAGTGATACCACCGGAAC
CCCGCGACTGAAAGTGTGGAAACACAGATCATGA back to topprotein sequence of rna3582 >rna3582-protein ID=rna3582-protein|Name=rna3582|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MSYAQRGGEETKYEQEMGPRMTPRTTPRNMPPPSMHSYDRTTPRHMPPPS
MHSFNATTPKSMPPQSMHSFSGTPRNMPPASMHSYDMDDVMVDPYTGLAY
KQPPRTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVL
AIDGFTGATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRF
QVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDLLVL
GTTRRVVSSATVMVNCNVQNINNNGGMGGGRVAGGGVQNGWGNGMGNNGM
GRAGNNGWL back to topmRNA from alignment at CM002461.1:747154..749073+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3582 ID=rna3582|Name=rna3582|organism=Nannochloropsis gaditana|type=mRNA|length=1920bp|location=Sequence derived from alignment at CM002461.1:747154..749073+ (Nannochloropsis gaditana)
TTTGTACCCTGGTTGCATTTCTTCGCCGACCCACACCCCTCAACGGAAGT
AATAAGTGTATGGCACCGATTGGACGCAAGACAACAAGAGGGACCACGAT
CCATGGAATATTTGCATCGTCCGCTCAATTATGTGGAAGAGCCCATGGGA
AAAGCGAGCTTCAAGCGCGAGCAGGAGGTCACTCCCAGGCACGGAGCATC
AAATAAACCACAAAGACACCAGACCAGAACGGTGTGACCCTGTTGTGGCG
TTTACTTTGTGTAGATTTCAGAGGTTCTCCTGAGCCCGACTTGGGGTTGA
GGTGCGTGGCGTgggtgggggaagatggCCACCTGTGACGTCCGAGTCTC
CTCACGTCACCGAAGAAGCAACAGCCTGGCTTCTACATCAGATCTTACCT
ATTGTCATTATCTTGTTATGTCGATTGGTCGCGGATGCAATCACCTGCAG
AGCAGAATTTGTGATACTTATCATCATGGTGTATAGCATTGACAGAAAAA
TTGCCAGTAATCGCAAAGTCCTGGCTCCTTCATGTCTGCTCAAGCACCAG
GCACGACAATATCTTGAATGTCCTCCTCTCACATGTCCACCACGTATCAC
ACAGTACACAGCAAGCAAAGCAACGTCCAGCATCATCAATCAAGAGCACT
AAATCCAACAGGAGCACGAAATAATTATGTCGTACGCCCAacgcggcggg
gaagagacCAAATATGAGCAGGAAATGGGGCCTCGGATGACTCCCCGCAC
GACCCCGCGGAACATGCCGCCCCCCAGTATGCACTCCTACGATCGCACCA
CGCCACGTCACATGCCTCCACCGAGCATGCACTCGTTTAATGCCACGACC
CCGAAAAGTATGCCTCCGCAAAGCATGCATTCGTTCAGTGGCACGCCACG
AAATATGCCGCCGGCGAGCATGCATTCGTACGACATGGATGATGTGATGG
TGGATCCTTACACGGGCCTGGCGTACAAGCAGCCTCCGCGCACCACCTGC
GAGCGCCATCGAGGAAAGTTCATCTGTCTTGGTGTCACGCTGGGTTTACT
TTTGGTGCTTGGCATTTTGAttgccatcttcttccctcgaGCGCCTCAGA
TCACATTGTTCAATTCAAGCGTGCTGGCCATCGATGGTTTCACTGGTAAG
TGATAGTAATAATATTGCACATTGGGGGGGTAAACAATTGGTCCAGTAGT
CGTCTAGGTCCAAGCCAAAATGTTCCTCACAGCTTCTTTACATCTTTTCC
CCTGTCACAGGCGCCACCGCCAGGTTTGTTTTTCAGATCCGGAACCGCAA
TTTATACCAAGTTTCATTTCAGAACTTGGTGGCGGAGGTGTATGACACAA
ACGGCATTTTTCTGGGCACAATTTTGCGGCCCGGTCGCTTCCAAGTTTTC
GGCCGTGCAACCGGTTTCGTGACGGCCACAGGCGTCTTCCGCAGCGCCTT
GCCCCAGCTTGCTAACGTCGGCATGGACTGTATGCAAAACGGCATGATGA
CGCACCTTCAGCTCCGGACATCGGGAGATCTGCTTGTCCTTGGAACCACA
AGGCGCGTCGTCTCCAGCGCCACGGTGATGGTGAATTGCAACGTACAAAA
TATTAATAACAACGGCGGgatggggggcgggagagtggcgggcggcgggg
TCCAGAATGGATGGGGTAATGGGATGGGCAATAATggcatggggagggcg
gggaataATGGATGGTTGTAAATCGTCTTCTTGTCATCAAATCCATCTTG
CCACGATACGAGGAGAGGAATTTAAAACAAAACAAAGTATTTTCATAGGA
CACAAAAGAGACAAGGTAAAAAGATGACAGAATGATGTGAGATCGCGGCG
CAGACGCAAATTGTCAGGCTGCATGCATGAAAAGGACGAAAGAAAACAGT
GGTGCAGAGCTTTAAATAAG back to topCoding sequence (CDS) from alignment at CM002461.1:747154..749073+ >rna3582 ID=rna3582|Name=rna3582|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002461.1:747154..749073+ (Nannochloropsis gaditana)
ATGTCGTACGCCCAacgcggcggggaagagacCAAATATGAGCAGGAAAT
GGGGCCTCGGATGACTCCCCGCACGACCCCGCGGAACATGCCGCCCCCCA
GTATGCACTCCTACGATCGCACCACGCCACGTCACATGCCTCCACCGAGC
ATGCACTCGTTTAATGCCACGACCCCGAAAAGTATGCCTCCGCAAAGCAT
GCATTCGTTCAGTGGCACGCCACGAAATATGCCGCCGGCGAGCATGCATT
CGTACGACATGGATGATGTGATGGTGGATCCTTACACGGGCCTGGCGTAC
AAGCAGCCTCCGCGCACCACCTGCGAGCGCCATCGAGGAAAGTTCATCTG
TCTTGGTGTCACGCTGGGTTTACTTTTGGTGCTTGGCATTTTGAttgcca
tcttcttccctcgaGCGCCTCAGATCACATTGTTCAATTCAAGCGTGCTG
GCCATCGATGGTTTCACTGGCGCCACCGCCAGGTTTGTTTTTCAGATCCG
GAACCGCAATTTATACCAAGTTTCATTTCAGAACTTGGTGGCGGAGGTGT
ATGACACAAACGGCATTTTTCTGGGCACAATTTTGCGGCCCGGTCGCTTC
CAAGTTTTCGGCCGTGCAACCGGTTTCGTGACGGCCACAGGCGTCTTCCG
CAGCGCCTTGCCCCAGCTTGCTAACGTCGGCATGGACTGTATGCAAAACG
GCATGATGACGCACCTTCAGCTCCGGACATCGGGAGATCTGCTTGTCCTT
GGAACCACAAGGCGCGTCGTCTCCAGCGCCACGGTGATGGTGAATTGCAA
CGTACAAAATATTAATAACAACGGCGGgatggggggcgggagagtggcgg
gcggcggggTCCAGAATGGATGGGGTAATGGGATGGGCAATAATggcatg
gggagggcggggaataATGGATGGTTGTAAATGTCGTACGCCCAacgcgg
cggggaagagacCAAATATGAGCAGGAAATGGGGCCTCGGATGACTCCCC
GCACGACCCCGCGGAACATGCCGCCCCCCAGTATGCACTCCTACGATCGC
ACCACGCCACGTCACATGCCTCCACCGAGCATGCACTCGTTTAATGCCAC
GACCCCGAAAAGTATGCCTCCGCAAAGCATGCATTCGTTCAGTGGCACGC
CACGAAATATGCCGCCGGCGAGCATGCATTCGTACGACATGGATGATGTG
ATGGTGGATCCTTACACGGGCCTGGCGTACAAGCAGCCTCCGCGCACCAC
CTGCGAGCGCCATCGAGGAAAGTTCATCTGTCTTGGTGTCACGCTGGGTT
TACTTTTGGTGCTTGGCATTTTGAttgccatcttcttccctcgaGCGCCT
CAGATCACATTGTTCAATTCAAGCGTGCTGGCCATCGATGGTTTCACTGG
CGCCACCGCCAGGTTTGTTTTTCAGATCCGGAACCGCAATTTATACCAAG
TTTCATTTCAGAACTTGGTGGCGGAGGTGTATGACACAAACGGCATTTTT
CTGGGCACAATTTTGCGGCCCGGTCGCTTCCAAGTTTTCGGCCGTGCAAC
CGGTTTCGTGACGGCCACAGGCGTCTTCCGCAGCGCCTTGCCCCAGCTTG
CTAACGTCGGCATGGACTGTATGCAAAACGGCATGATGACGCACCTTCAG
CTCCGGACATCGGGAGATCTGCTTGTCCTTGGAACCACAAGGCGCGTCGT
CTCCAGCGCCACGGTGATGGTGAATTGCAACGTACAAAATATTAATAACA
ACGGCGGgatggggggcgggagagtggcgggcggcggggTCCAGAATGGA
TGGGGTAATGGGATGGGCAATAATggcatggggagggcggggaataATGG
ATGGTTGTAA back to top
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