EWM27113.1, cds3573 (CDS) Nannochloropsis gaditana

Overview
NameEWM27113.1
Unique Namecds3573
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:747830..748298 +
Alignment locationCM002461.1:748414..748874 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27113.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100046g29.5152.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:747830..748298 +
CM002461.1supercontigCM002461.1:748414..748874 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27113.1 vs. NCBI_GenBank
Match: gi|585109289|gb|EWM27112.1| (hypothetical protein Naga_100046g29 [Nannochloropsis gaditana] >gi|585109290|gb|EWM27113.1| hypothetical protein Naga_100046g29 [Nannochloropsis gaditana])

HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0 
Query:    1 MSYAQRGGEETKYEQEMGPRMTPRTTPRNMPPPSMHSYDRTTPRHMPPPSMHSFNATTPKSMPPQSMHSFSGTPRNMPPASMHSYDMDDVMVDPYTGLAYKQPPRTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGFTGATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDLLVLGTTRRVVSSATVMVNCNVQNINNNGGMGGGRVAGGGVQNGWGNGMGNNGMGRAGNNGWL 309
            MSYAQRGGEETKYEQEMGPRMTPRTTPRNMPPPSMHSYDRTTPRHMPPPSMHSFNATTPKSMPPQSMHSFSGTPRNMPPASMHSYDMDDVMVDPYTGLAYKQPPRTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGFTGATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDLLVLGTTRRVVSSATVMVNCNVQNINNNGGMGGGRVAGGGVQNGWGNGMGNNGMGRAGNNGWL
Sbjct:    1 MSYAQRGGEETKYEQEMGPRMTPRTTPRNMPPPSMHSYDRTTPRHMPPPSMHSFNATTPKSMPPQSMHSFSGTPRNMPPASMHSYDMDDVMVDPYTGLAYKQPPRTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGFTGATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDLLVLGTTRRVVSSATVMVNCNVQNINNNGGMGGGRVAGGGVQNGWGNGMGNNGMGRAGNNGWL 309
[Close]
BLAST of EWM27113.1 vs. NCBI_GenBank
Match: gi|585101841|gb|EWM21586.1| (hypothetical protein Naga_100012g8 [Nannochloropsis gaditana])

HSP 1 Score: 93.5893 bits (231), Expect = 2.365e-18
Identity = 68/207 (32.85%), Postives = 105/207 (50.72%), Query Frame = 0 
Query:  105 RTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGFTG--ATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDLLVLGTTRRV-VSSATVMVNCNVQNINNNGGMGGGRVAGGGVQ-NGWGNGMGNNGMGRAGNNG 307
            R  C RH+GK I LG+   +L+ L I I +  P+ P  TL   S L +DG     AT     +++N N Y ++F++L  +VYD +G  +G + RP RF+V GR+T  + AT   + +  ++ ++G++C+QN  +T L+L+ +      G T R  V     +  C   NI      GG      GV     GNG   N +G A + G
Sbjct:   49 RGFCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLGAGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQGRSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQGTVQARFAGRTFRTQVGPMEQLTQCVATNI-----AGGSSPPPPGVTPAAVGNGQIINSIGEAISQG 250
The following BLAST results are available for this feature:
BLAST of EWM27113.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109289|gb|EWM27112.1|0.000e+0100.00hypothetical protein Naga_100046g29 [Nannochlorops... [more]
gi|585101841|gb|EWM21586.1|2.365e-1832.85hypothetical protein Naga_100012g8 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3582rna3582Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications