rna3580, rna3580 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3580
Unique Name	rna3580
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	975
Alignment location	CM002461.1:744887..746938 +

Link to JBrowse

Properties


Property Name	Value
Product	tbp-associated factor 15b
Orig transcript id	gnl\|cribi\|Naga_100046g27.5150.mrna
Orig protein id	gnl\|cribi\|Naga_100046g27.5150
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:744887..746938 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g27	gene3448	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3580	rna3580-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27111.1	cds3571	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:744887..746938+
coding sequence from alignment at CM002461.1:744887..746938+

mRNA sequence

>rna3580 ID=rna3580|Name=rna3580|organism=Nannochloropsis gaditana|type=mRNA|length=975bp
ATGTCGATGGAAGAGCACACCACGTCTTTCTCCGAGTCGGGACGACAAGG
CAGTGACGGCGGTTTGACAGACGTGTTGAAGGATGACGAGTCCGAAGCGG
CCGCGGCCGTGGCATCGACGGCTACGGAGGAAGAGGACGAGGGCGCTCAG
CCTAGTAGCCAGAATGTCATTCCTGCGGACAGCCTCGCCAATGGTTTCTC
CGTGGCAAAGGGCTTTCTGGCCTCTGGATGGTCTCAAGCTCGCAAGTCCA
TCGCCACGCTGCAAGACTCAGAGGCCGTGCACAAAATGCGAGAGGCGTCG
AAACCCTTCGTCGGGGCGGTGGTGGAGGGCGGCAAAGTCGTCGGCGACCG
ACTTCATCACACGGCGGAGGCGGCCAAGCCAGGCTTGGAGGCCGTAGGGA
GGCGGGTGTCGGGGGCAGTAGAGCATCTGTCAGAGAGAACGCGGCCCGCC
CTGGAGAAAGCCGGAGAGACGATCAAGAAGACGACGAAGCAGGTGGTCGA
CGAGGGTAAACCCATGGTGAAGAAGGTGGGCGATTTTTTCAATGATAATC
TCGGCGGCAAGAAGGGGGGAGGGGGAGGGGACGGTGACCCTCCCACGACG
GTGTAAAGCGTAAGGTATGGGCGAGTCGATAGCTGGGTTGTAGAGTGTGG
AGGGCGGTGGGAGGGATCGACGAGGAGCTTTTTGGTCCGAGCCATGTAAC
AGAGACTCAAATGATTGGTGAACTTTCGTGATGCCGCATTTATCGAGAAA
ATAAAAAGCCGGGAGAACCGGGGCGGAACGAAAATCTCGTGGAAAGTTGA
ACCATATTTTTATTTTTGTCTCCACCCGGGGAGTAAGACTAATCTCACTG
ATTGGGTCACTCCAATTTATGTCGCGGTACCCCTTCCTTTGTGGGGGACA
ATATCATGACCACGGCGCCAAACTCAAATATGGGAGCACACCCGGCGTCA
AACCCAAAACATGGGAGCATCTCCC

protein sequence of rna3580

>rna3580-protein ID=rna3580-protein|Name=rna3580|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MSESKNEAVSAAEAEAPAAPPEPEEPAEDPNEVVRFLTHLSPTYAEAAKA
LVAAGVETVADLAGLEYRDLGSYGLPQDIRDKLGRVLDKLRVNGTVFISG
LNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGE
CVLTYEEPNSAHASISFFHGTELAGRKLKVSMVSYGEDEEGGNQGGAEET
GGIGRIETAMRHRQEEGVAGSQLLIRITQ

mRNA from alignment at CM002461.1:744887..746938+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3580 ID=rna3580|Name=rna3580|organism=Nannochloropsis gaditana|type=mRNA|length=2052bp|location=Sequence derived from alignment at CM002461.1:744887..746938+ (Nannochloropsis gaditana)
ATGAGTGAAAGCAAAAATGAGGCCGTCTCTGCCGCGGAGGCCGAGGCCCC
TGCTGCCCCTCCAGAGCCTGAGGAACCTGCGGAAGACCCGAACGAGGTTG
TGCGCTTTCTGACCCATTTATCGCCTACCTATGCTGAGGCCGCTAAGGTA
TGGCGCTGAATAGCGGAGGATAATCAGGGAAATTGACATACATGAAAAAA
GTGTTTTGTGCCGGAGTTTCTATGTGGGCATCTTCTCCCACAGCCATTGC
ATGCCTGATGTGTTTTTTGACGTGTTCTAGcatgagatggaggagggagt
gccATGGAAGGCATGGAAATGAACGGGGGCAGAAGGAGTCATAAGGGTGC
GGAGCAGCACCTGACAATTCCTGGATGATACGTTTTGATACCCGCAGGCA
TTGGTGGCTGCGGGCGTGGAGACCGTGGCGGACTTGGCGGGGCTGGAATA
CCGGGACTTGGGAAGCTACGGCTTACCTCAAGATATCCGAGACAAGCTTG
GGCGCGTTGTGAGTgatcaaggggggggggggggaggaatgtgGAAGTTT
TTGGAAGCAGCGCTCGGGCGCGTTGTGAGTgatcaaggggggggggaggg
ggaatgtgGAAGTTTTTGGAAGCAGCGTGCGTCCTGTCGCGCCCGCCAGA
TGGTGGGTGGAGTGagccgggcggaggggagcggaggagggcctcggcgg
gggcggggggaggagtgtATACGTTCTTGGCACGGCCACGGGGCCGCTTT
CTGGTCAAGGctagagagggaaggaagggggggcgagagagctAATTGGC
AACGGGGTGCCTGTTATGTTGCTGGGTTTTGTGTGGCGAGATTGAGGGCC
CGCGAGGGGTGGCTGTAACCTCCTGTCTGCGTGGCAGTCGGAAGAGGGCA
ATCCTTGCTGCTGCCAGTGCTGACTCGCTCTCAGGGAGCTCGGGGCTCTT
GTCCGTCCTCGGAGGGTGACTTTTTATGCTTGTGCCTGGCGTGCGCCTGA
ACTCCGGCTAGTTAGCCCCCCGGCCCGCCCTGTGGCGGACTCGATGAGTG
CTTGGGGAGTTGTTTAAACCGGAGGATATCAAGGGTCCCGCCCTCTGGGA
AATCGAATCTTGATAGATTCGagctcgagggggagggactcGCTCGAACG
CGCATAGGCTCCCTGAGCCCGCCTGCAAGGCCGGGGACGCCTGTTTCGTT
GGGGTGCACTCCCGGTCCTTCTCGTTCCCCGCACCCTCTTATCCATCGGC
atcgccctttctccccacctCAGCTGGACAAGCTGCGCGTGAACGGGACT
GTCTTTATCTCAGGGCTAAAccccgccaccacggagGCCGAGATCGCCGA
GTACTTTGGCCAGATCGGCATCGTCAAGAAGATGAAACAGAAACGCGGGT
GAGAGCcctgggaggcgggaaagggagcccTACAGGGAGCATCTTCAATC
GTTTTCGACCATCCCGCCCTCATCTGCTCattctcgcccccctccccatc
ctcctagATACCCCGATCAGTGGCCCTACAAGATCAAAATGTACCGGGAC
GACTCGGGTAAGAGCAAAGGGGAGTGCGTGCTCACGTACGAAGAACCGAA
TTCTGCGCATGCCTCCATATCCTTCTTCCACGGGACGGAGCTGGCCGGTA
GGAAATTGAAAGTGAGTATGGTCTCGtacggggaggatgaggagggaggg
aatcaaGGTGGAGGTTACGGAGGGGGATATGGAGGTGGCTATtcacgagg
aggtggcggtggaggctggcagggaggaagagggggcggtggaaggggtg
ggtatgggggaggaggccgcggcggtggcggctaCAGGGAcgatcgagga
ggggggggggggtatggaggggggggttatcgggacagagggggaggaag
gggaggagggggtggagggggataCGGTAGATACGATGATCACAGGGGGA
GCAGAGGAGACAGGCGGGATCGGCCGTATTGAGACTGCAATGAGACAtcg
gcaggaggaaggggtggctgGCTCGCAGCTCCTTATTCGCATCACGCAGT
AA

Coding sequence (CDS) from alignment at CM002461.1:744887..746938+

>rna3580 ID=rna3580|Name=rna3580|organism=Nannochloropsis gaditana|type=CDS|length=3450bp|location=Sequence derived from alignment at CM002461.1:744887..746938+ (Nannochloropsis gaditana)
ATGAGTGAAAGCAAAAATGAGGCCGTCTCTGCCGCGGAGGCCGAGGCCCC
TGCTGCCCCTCCAGAGCCTGAGGAACCTGCGGAAGACCCGAACGAGGTTG
TGCGCTTTCTGACCCATTTATCGCCTACCTATGCTGAGGCCGCTAAGGCA
TTGGTGGCTGCGGGCGTGGAGACCGTGGCGGACTTGGCGGGGCTGGAATA
CCGGGACTTGGGAAGCTACGGCTTACCTCAAGATATCCGAGACAAGCTTG
GGCGCGTTCTGGACAAGCTGCGCGTGAACGGGACTGTCTTTATCTCAGGG
CTAAAccccgccaccacggagGCCGAGATCGCCGAGTACTTTGGCCAGAT
CGGCATCGTCAAGAAGATGAAACAGAAACGCGGATACCCCGATCAGTGGC
CCTACAAGATCAAAATGTACCGGGACGACTCGGGTAAGAGCAAAGGGGAG
TGCGTGCTCACGTACGAAGAACCGAATTCTGCGCATGCCTCCATATCCTT
CTTCCACGGGACGGAGCTGGCCGGTAGGAAATTGAAAGTGAGTATGGTCT
CGtacggggaggatgaggagggagggaatcaaGGGGGAGCAGAGGAGACA
GGCGGGATCGGCCGTATTGAGACTGCAATGAGACAtcggcaggaggaagg
ggtggctgGCTCGCAGCTCCTTATTCGCATCACGCAGTAAATGAGTGAAA
GCAAAAATGAGGCCGTCTCTGCCGCGGAGGCCGAGGCCCCTGCTGCCCCT
CCAGAGCCTGAGGAACCTGCGGAAGACCCGAACGAGGTTGTGCGCTTTCT
GACCCATTTATCGCCTACCTATGCTGAGGCCGCTAAGGCATTGGTGGCTG
CGGGCGTGGAGACCGTGGCGGACTTGGCGGGGCTGGAATACCGGGACTTG
GGAAGCTACGGCTTACCTCAAGATATCCGAGACAAGCTTGGGCGCGTTCT
GGACAAGCTGCGCGTGAACGGGACTGTCTTTATCTCAGGGCTAAAccccg
ccaccacggagGCCGAGATCGCCGAGTACTTTGGCCAGATCGGCATCGTC
AAGAAGATGAAACAGAAACGCGGATACCCCGATCAGTGGCCCTACAAGAT
CAAAATGTACCGGGACGACTCGGGTAAGAGCAAAGGGGAGTGCGTGCTCA
CGTACGAAGAACCGAATTCTGCGCATGCCTCCATATCCTTCTTCCACGGG
ACGGAGCTGGCCGGTAGGAAATTGAAAGTGAGTATGGTCTCGtacgggga
ggatgaggagggagggaatcaaGGGGGAGCAGAGGAGACAGGCGGGATCG
GCCGTATTGAGACTGCAATGAGACAtcggcaggaggaaggggtggctgGC
TCGCAGCTCCTTATTCGCATCACGCAGTAAATGAGTGAAAGCAAAAATGA
GGCCGTCTCTGCCGCGGAGGCCGAGGCCCCTGCTGCCCCTCCAGAGCCTG
AGGAACCTGCGGAAGACCCGAACGAGGTTGTGCGCTTTCTGACCCATTTA
TCGCCTACCTATGCTGAGGCCGCTAAGGCATTGGTGGCTGCGGGCGTGGA
GACCGTGGCGGACTTGGCGGGGCTGGAATACCGGGACTTGGGAAGCTACG
GCTTACCTCAAGATATCCGAGACAAGCTTGGGCGCGTTCTGGACAAGCTG
CGCGTGAACGGGACTGTCTTTATCTCAGGGCTAAAccccgccaccacgga
gGCCGAGATCGCCGAGTACTTTGGCCAGATCGGCATCGTCAAGAAGATGA
AACAGAAACGCGGATACCCCGATCAGTGGCCCTACAAGATCAAAATGTAC
CGGGACGACTCGGGTAAGAGCAAAGGGGAGTGCGTGCTCACGTACGAAGA
ACCGAATTCTGCGCATGCCTCCATATCCTTCTTCCACGGGACGGAGCTGG
CCGGTAGGAAATTGAAAGTGAGTATGGTCTCGtacggggaggatgaggag
ggagggaatcaaGGGGGAGCAGAGGAGACAGGCGGGATCGGCCGTATTGA
GACTGCAATGAGACAtcggcaggaggaaggggtggctgGCTCGCAGCTCC
TTATTCGCATCACGCAGTAAATGAGTGAAAGCAAAAATGAGGCCGTCTCT
GCCGCGGAGGCCGAGGCCCCTGCTGCCCCTCCAGAGCCTGAGGAACCTGC
GGAAGACCCGAACGAGGTTGTGCGCTTTCTGACCCATTTATCGCCTACCT
ATGCTGAGGCCGCTAAGGCATTGGTGGCTGCGGGCGTGGAGACCGTGGCG
GACTTGGCGGGGCTGGAATACCGGGACTTGGGAAGCTACGGCTTACCTCA
AGATATCCGAGACAAGCTTGGGCGCGTTCTGGACAAGCTGCGCGTGAACG
GGACTGTCTTTATCTCAGGGCTAAAccccgccaccacggagGCCGAGATC
GCCGAGTACTTTGGCCAGATCGGCATCGTCAAGAAGATGAAACAGAAACG
CGGATACCCCGATCAGTGGCCCTACAAGATCAAAATGTACCGGGACGACT
CGGGTAAGAGCAAAGGGGAGTGCGTGCTCACGTACGAAGAACCGAATTCT
GCGCATGCCTCCATATCCTTCTTCCACGGGACGGAGCTGGCCGGTAGGAA
ATTGAAAGTGAGTATGGTCTCGtacggggaggatgaggagggagggaatc
aaGGGGGAGCAGAGGAGACAGGCGGGATCGGCCGTATTGAGACTGCAATG
AGACAtcggcaggaggaaggggtggctgGCTCGCAGCTCCTTATTCGCAT
CACGCAGTAAATGAGTGAAAGCAAAAATGAGGCCGTCTCTGCCGCGGAGG
CCGAGGCCCCTGCTGCCCCTCCAGAGCCTGAGGAACCTGCGGAAGACCCG
AACGAGGTTGTGCGCTTTCTGACCCATTTATCGCCTACCTATGCTGAGGC
CGCTAAGGCATTGGTGGCTGCGGGCGTGGAGACCGTGGCGGACTTGGCGG
GGCTGGAATACCGGGACTTGGGAAGCTACGGCTTACCTCAAGATATCCGA
GACAAGCTTGGGCGCGTTCTGGACAAGCTGCGCGTGAACGGGACTGTCTT
TATCTCAGGGCTAAAccccgccaccacggagGCCGAGATCGCCGAGTACT
TTGGCCAGATCGGCATCGTCAAGAAGATGAAACAGAAACGCGGATACCCC
GATCAGTGGCCCTACAAGATCAAAATGTACCGGGACGACTCGGGTAAGAG
CAAAGGGGAGTGCGTGCTCACGTACGAAGAACCGAATTCTGCGCATGCCT
CCATATCCTTCTTCCACGGGACGGAGCTGGCCGGTAGGAAATTGAAAGTG
AGTATGGTCTCGtacggggaggatgaggagggagggaatcaaGGGGGAGC
AGAGGAGACAGGCGGGATCGGCCGTATTGAGACTGCAATGAGACAtcggc
aggaggaaggggtggctgGCTCGCAGCTCCTTATTCGCATCACGCAGTAA

Synonyms

Publications