EWM27111.1, cds3571 (CDS) Nannochloropsis gaditana

Overview
NameEWM27111.1
Unique Namecds3571
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:744887..745033 +
Alignment locationCM002461.1:745284..745394 +
Alignment locationCM002461.1:746160..746284 +
Alignment locationCM002461.1:746394..746593 +
Alignment locationCM002461.1:746832..746938 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27111.1
Producttbp-associated factor 15b
Orig transcript idgnl|cribi|Naga_100046g27.5150.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:744887..745033 +
CM002461.1supercontigCM002461.1:745284..745394 +
CM002461.1supercontigCM002461.1:746160..746284 +
CM002461.1supercontigCM002461.1:746394..746593 +
CM002461.1supercontigCM002461.1:746832..746938 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|585109288|gb|EWM27111.1| (tbp-associated factor 15b [Nannochloropsis gaditana])

HSP 1 Score: 468.389 bits (1204), Expect = 5.744e-167
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0 
Query:    1 MSESKNEAVSAAEAEAPAAPPEPEEPAEDPNEVVRFLTHLSPTYAEAAKALVAAGVETVADLAGLEYRDLGSYGLPQDIRDKLGRVLDKLRVNGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMVSYGEDEEGGNQGGAEETGGIGRIETAMRHRQEEGVAGSQLLIRITQ 229
            MSESKNEAVSAAEAEAPAAPPEPEEPAEDPNEVVRFLTHLSPTYAEAAKALVAAGVETVADLAGLEYRDLGSYGLPQDIRDKLGRVLDKLRVNGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMVSYGEDEEGGNQGGAEETGGIGRIETAMRHRQEEGVAGSQLLIRITQ
Sbjct:    1 MSESKNEAVSAAEAEAPAAPPEPEEPAEDPNEVVRFLTHLSPTYAEAAKALVAAGVETVADLAGLEYRDLGSYGLPQDIRDKLGRVLDKLRVNGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMVSYGEDEEGGNQGGAEETGGIGRIETAMRHRQEEGVAGSQLLIRITQ 229
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|299115956|emb|CBN75961.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.612 bits (270), Expect = 3.652e-26
Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = 0 
Query:   93 NGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDD-SGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMVS 184
            N  V++SGL    TE ++ E F  IGI+ +++QKRGY DQWP+ +++Y+DD +GK KG+C++ YEEPNSAHA++ +F G +  G K+ V+M +
Sbjct:   58 NNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAA 150
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|971506797|dbj|GAQ91413.1| (hypothetical protein KFL_007790050 [Klebsormidium nitens])

HSP 1 Score: 108.997 bits (271), Expect = 8.290e-25
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 0 
Query:   81 DKLGRVLDKLRVNGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMV 183
            DK G   D  R+    +ISGL   TTE EI E F  IG + +++QKRGY DQWP+ IK+Y DD+GK KG+ VLTYE+P +AH++  FF+G  L G KL V+M 
Sbjct:  168 DKCGDSCDNARI----YISGLPDNTTEDEIRELFSGIGQIGRIRQKRGYKDQWPWNIKIYTDDAGKQKGDGVLTYEDPAAAHSAGGFFNGHSLRGSKLTVTMA 266
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|527184361|gb|EPS58304.1| (hypothetical protein M569_16511 [Genlisea aurea])

HSP 1 Score: 108.997 bits (271), Expect = 2.142e-24
Identity = 48/91 (52.75%), Postives = 67/91 (73.63%), Query Frame = 0 
Query:   93 NGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMV 183
            N  ++IS L P  T  E+ E FG IG V ++KQKRGY DQWP+ IK+Y D+ GK+KG+ VL+YE+P++AH++  FF+G E+ G K+KVSM 
Sbjct:  225 NARIYISNLPPDVTIDELRELFGSIGQVARIKQKRGYKDQWPWSIKLYTDEQGKNKGDAVLSYEDPSAAHSAGGFFNGHEMRGHKIKVSMA 315
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|168039562|ref|XP_001772266.1| (predicted protein [Physcomitrella patens] >gi|162676436|gb|EDQ62919.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 107.842 bits (268), Expect = 2.775e-24
Identity = 48/90 (53.33%), Postives = 68/90 (75.56%), Query Frame = 0 
Query:   93 NGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSM 182
            N  ++ISGL     E E+ E FG IG V ++KQKRGY DQWPY IK+Y+D+SGK+KG+ VL+YE+P++AH++  FF+  E+ G K+KV+M
Sbjct:  208 NARIYISGLPLDVKEDELQELFGGIGQVARVKQKRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAM 297
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|1026759580|gb|OAE21470.1| (hypothetical protein AXG93_613s1070 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 106.686 bits (265), Expect = 3.427e-24
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 0 
Query:   81 DKLGRVLDKLRVNGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSM 182
            D+ G   D  R+    +ISGL    T  E+ E FG IG V ++KQKRGY DQWP+ +K+Y D++GK+KG+ VLTYE+P++AH++ SFF+   L G K+KV+M
Sbjct:  141 DECGDTCDNTRI----YISGLPLDVTVDELRELFGGIGQVARIKQKRGYKDQWPWNVKIYTDEAGKNKGDAVLTYEDPSAAHSAGSFFNDHSLRGNKIKVTM 238
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|902180477|gb|KNA09554.1| (hypothetical protein SOVF_152460 [Spinacia oleracea])

HSP 1 Score: 108.997 bits (271), Expect = 4.369e-24
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 0 
Query:   93 NGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMV 183
            N  ++IS L P     E+ E FG IG V ++KQKRGY DQWPY IK+Y DDSGK+KG+ VL+YE+P++AH++  FF+G ++ G K+ VSM 
Sbjct:  314 NSRIYISNLPPDVAVEELRELFGSIGTVARIKQKRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSAGGFFNGHDIRGYKINVSMA 404
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|937894575|dbj|BAS70555.1| (Os01g0164400 [Oryza sativa Japonica Group])

HSP 1 Score: 103.605 bits (257), Expect = 6.465e-24
Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 0 
Query:   87 LDKLRVNGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMV 183
             D+   N  ++IS L P  T  E+ E FG IG V ++KQKRGY DQWP+ IK+Y DDSGK+KG+  L YE+P++AH++  F++  E+ G K+ V+M 
Sbjct:   48 CDETCDNARIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKNKGDACLAYEDPSAAHSAGGFYNNYEMRGYKISVAMA 144
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|764562381|ref|XP_011461457.1| (PREDICTED: transcription initiation factor TFIID subunit 15b [Fragaria vesca subsp. vesca])

HSP 1 Score: 108.227 bits (269), Expect = 1.027e-23
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 0 
Query:   87 LDKLRVNGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMV 183
             D    N  ++IS L P  T  E+   FG IG V ++KQKRGY DQWPY IK+Y DDSGK+KG+  L YE+PN+AH++ SF++G ++ G K+ V+M 
Sbjct:  315 CDDTCDNARIYISNLPPDVTVEELQALFGGIGQVGRIKQKRGYKDQWPYNIKIYTDDSGKNKGDACLAYEDPNAAHSAGSFYNGHDVRGYKISVAMA 411
[Close]
BLAST of EWM27111.1 vs. NCBI_GenBank
Match: gi|168066879|ref|XP_001785358.1| (predicted protein [Physcomitrella patens] >gi|162663055|gb|EDQ49843.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 107.457 bits (267), Expect = 1.968e-23
Identity = 48/90 (53.33%), Postives = 68/90 (75.56%), Query Frame = 0 
Query:   93 NGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSM 182
            N  ++ISGL     E E+ E FG IG V ++KQKRGY DQWPY IK+Y+D+SGK+KG+ VL+YE+P++AH++  FF+  E+ G K+KV+M
Sbjct:  211 NARIYISGLPLDVKEDELRELFGGIGQVARIKQKRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAM 300
The following BLAST results are available for this feature:
BLAST of EWM27111.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109288|gb|EWM27111.1|5.744e-167100.00tbp-associated factor 15b [Nannochloropsis gaditan... [more]
gi|299115956|emb|CBN75961.1|3.652e-2647.31conserved unknown protein [Ectocarpus siliculosus][more]
gi|971506797|dbj|GAQ91413.1|8.290e-2551.46hypothetical protein KFL_007790050 [Klebsormidium ... [more]
gi|527184361|gb|EPS58304.1|2.142e-2452.75hypothetical protein M569_16511 [Genlisea aurea][more]
gi|168039562|ref|XP_001772266.1|2.775e-2453.33predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1026759580|gb|OAE21470.1|3.427e-2449.02hypothetical protein AXG93_613s1070 [Marchantia po... [more]
gi|902180477|gb|KNA09554.1|4.369e-2452.75hypothetical protein SOVF_152460 [Spinacia olerace... [more]
gi|937894575|dbj|BAS70555.1|6.465e-2447.42Os01g0164400 [Oryza sativa Japonica Group][more]
gi|764562381|ref|XP_011461457.1|1.027e-2349.48PREDICTED: transcription initiation factor TFIID s... [more]
gi|168066879|ref|XP_001785358.1|1.968e-2353.33predicted protein [Physcomitrella patens] >gi|1626... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3580rna3580Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications