rna358, rna358 (mRNA) Nannochloropsis gaditana

Overview
Namerna358
Unique Namerna358
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1614
Alignment locationCM002455.1:873735..874203 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g138.1827.mrna
Orig protein idgnl|cribi|Naga_100003g138.1827
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:873735..874203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g138gene345Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna358rna358-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30310.1cds358Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna358 ID=rna358|Name=rna358|organism=Nannochloropsis gaditana|type=mRNA|length=1614bp
ATGGTGCTTATCATGAAGGATTGGCAAATTCTTCTCAGCATTTTCGTCAT
GGCTGTGATGGCAGGACCTGCGACTGGCTTCATTTTTCGCTCCCAGCCTA
TCTTATTTCTCCAGACATCGCTACCGCGAAGTTCGCACTTCCCGAGTCGC
AGTCAGGTGTTGAGAGCATCTCTATTGCACGAGCTGGGACAACAGTTGCC
CTTTATTGTCGTGGCAGGAGATGGGACCTCGGTGGACCTGAATGCTCTGC
AAGACTCGTTGCCTTCCGTCAGCATAGATGATGCTAAAGCACTTTTGGAC
AGTTTTTCAGACCCCGATACTCGAAGCAACATTGTCAAATCGTTGCCAAA
ATTGAATTTGCCGGCTAAGGTGCCCCTCCAGTTGCAGGACGCTTTGAAAG
CCGCCCAAGAAGCAACTCCGGGTGCTCTCGACAGCATCAAGGGCTTCACA
CGGGAATTTCAAGGCACCTTAGAGAAAATAAGACAAGGCGGGTCTTTAAA
TCTTCCTTCGCTGTCTAGTATACCATCAGTTGATGTTGAAAGCGTACCAC
TCGGTGCTGAAATAAAGACTGAATTAAGCGCTTTGAAGAGTCAAGTCGGT
GAAATTGTCGGCTCTAGGTTATCCGGTCTTGGGAGCGCCTTCACGGAAAA
AGCGGGAGATGTGCTCATACCTTACCAACCGTTTCTTGAACAAACTAAGC
GTCAACTTGGTGATAAATTCTCTGTGGTGTCGCAATTTGCAGAGCAGGCA
ACACAAGAGCTGAGTAAGGATGCTGAAACACTTTCACCAGCTTTGCGGGC
GCTGAAAACGGTTGGAACTCCCCGAAATTTGTTTAACGCAGAAAACATTG
TTATATTGCCTTTTTGGGCTAGCGTAATTCTGGCTCCTTCAAACACTTTT
GTTAAGACCCTTGTGTCATCGTACCTTCCTGTATTGGTAGCAGCGCTTGC
CTATACTTGGAGCGCGTATTTGGCTTTTCAGGACCCTGCGGCACTGGAAG
GTTTTGCTTCGATCTCGGACTTGAGCGCACTCAGCAAAGGACTAGGTACT
GAAGCTGGGACCGCTACAGCCTGGGCACACTTTATCGCGCAAGACTTATT
TGTGGGTCGATGGATTTTTCTGGACGGCATCCGTAACGGTGTATGGACAG
CTCATTCCCTCACATTAGCTTTTCTTTTTGGACCCACTGGGATCCTCTCG
CACCTTCTGACCCGCTCTTTTGTCAAAATTTTTCGATGGGATATTGCTGA
TATTATGACGACGGGATCACGAGCAGTTGCACCTTCGGCTGCCGACGACA
TGGCCAAGTCCATGGTAAAGGATGCTGAAAAGCAATCGAAGAGCACGCTG
CGCGCTGCCGACAGACAAGCAGAGAAATCTTTGAATAAGGCAAACTCGGA
AGCCCGTAAGATCATTATCCAGGCGCGCAAGCAAGCGGAAGAAGCCTTAT
CCAGCGAGAACAAAATAATCGCCAGCGCGGAGGCTCAAGCACAGCGCATC
CTAGCCGAAGCGCAAAGCAAAGCAGACGCAATTATGAGAAAGACATCGCC
TGACTCATCTCAAACAGCTTCCTCGGCAGAAAGCAGCTCTACATCCAGGA
CATCTATGGAGTAA
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protein sequence of rna358

>rna358-protein ID=rna358-protein|Name=rna358|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
MDPACFNLPRPSRLEPGPSQPPPPAPAISLPPLPLAALCCTNTCCNYESI
LIVCDILILVEQADKSGRILRESRRRRWISTLMLHITVFHPCSMCAVRSR
FDIGIHETQNIFRQRDMCDACPVYTRFIAPTKLLM
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mRNA from alignment at CM002455.1:873735..874203+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna358 ID=rna358|Name=rna358|organism=Nannochloropsis gaditana|type=mRNA|length=469bp|location=Sequence derived from alignment at CM002455.1:873735..874203+ (Nannochloropsis gaditana)
ATGGATCCCGCGtgcttcaacctcccccggccctcaAGACTCGAGCCCGG
CCCcagccaacctcctcccccggccccagcgATCTCGCTCCCACCGCTCC
CACTCGCAGCCCTCTGTTGTACAAATACTTGTTGCAACTATGAGAGTATT
TTAATTGTATGTGACATTCTGATCCTGGTAGAGCAAGCCGACAAATCTGG
GCGAATCCTCCGGGAGTCAAGAAGACGGAGATGGATTTCTACTTGTATCA
AGCGTGTAATACGCACCTCTTTGTACCAACTGACATATTTATGTATCGCT
CGTAGTAATGCTTCATATTACCGTTTTTCATCCATGTTCAATGTGTGCTG
TACGCAGTCGTTTTGATATTGGCATCCATGAAACACAAAATATTTTCCGT
CAAAGGGATATGTGTGATGCTTGTCCTGTGTATACCCGCTTTATCGCACC
TACGAAGTTGTTGATGTAG
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Coding sequence (CDS) from alignment at CM002455.1:873735..874203+

>rna358 ID=rna358|Name=rna358|organism=Nannochloropsis gaditana|type=CDS|length=816bp|location=Sequence derived from alignment at CM002455.1:873735..874203+ (Nannochloropsis gaditana)
ATGGATCCCGCGtgcttcaacctcccccggccctcaAGACTCGAGCCCGG
CCCcagccaacctcctcccccggccccagcgATCTCGCTCCCACCGCTCC
CACTCGCAGCCCTCTGTTGTACAAATACTTGTTGCAACTATGAGAGTATT
TTAATTGTATGTGACATTCTGATCCTGGTAGAGCAAGCCGACAAATCTGG
GCGAATCCTCCGGGAGTCAAGAAGACGGAGATGGATTTCTACTTTAATGC
TTCATATTACCGTTTTTCATCCATGTTCAATGTGTGCTGTACGCAGTCGT
TTTGATATTGGCATCCATGAAACACAAAATATTTTCCGTCAAAGGGATAT
GTGTGATGCTTGTCCTGTGTATACCCGCTTTATCGCACCTACGAAGTTGT
TGATGTAGATGGATCCCGCGtgcttcaacctcccccggccctcaAGACTC
GAGCCCGGCCCcagccaacctcctcccccggccccagcgATCTCGCTCCC
ACCGCTCCCACTCGCAGCCCTCTGTTGTACAAATACTTGTTGCAACTATG
AGAGTATTTTAATTGTATGTGACATTCTGATCCTGGTAGAGCAAGCCGAC
AAATCTGGGCGAATCCTCCGGGAGTCAAGAAGACGGAGATGGATTTCTAC
TTTAATGCTTCATATTACCGTTTTTCATCCATGTTCAATGTGTGCTGTAC
GCAGTCGTTTTGATATTGGCATCCATGAAACACAAAATATTTTCCGTCAA
AGGGATATGTGTGATGCTTGTCCTGTGTATACCCGCTTTATCGCACCTAC
GAAGTTGTTGATGTAG
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Synonyms
Publications