rna3570, rna3570 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3570
Unique Name	rna3570
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1891
Alignment location	CM002461.1:725451..726837 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100046g16.5162.mrna
Orig protein id	gnl\|cribi\|Naga_100046g16.5162
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:725451..726837 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g16	gene3439	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3570	rna3570-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27123.1	cds3561	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:725451..726837-
coding sequence from alignment at CM002461.1:725451..726837-

mRNA sequence

>rna3570 ID=rna3570|Name=rna3570|organism=Nannochloropsis gaditana|type=mRNA|length=1891bp
AGTGTGTTTTTAATAGAACTCCTGGGCTAACTAGTACTTTTCACATAATA
ACAAGAAAAACACAGCGCTAGTGATGGGCTCTTTCCCCAGTTTTACGGAT
GAGGACGGCTCAGCTCCAGTGAAAGCGCAAGATTAGCCTTCTCAGCGGCC
GAGTTGCACATGGCCCGGCAAAGCAGAATACGCTCCCCTAACCATACCAT
CTCCGCGCTTGCACTCCGCCACGTTGCCGTCCTTCTGTTTCTTCTAAGTA
GACAAATAAATGCTTTCTTGCCGGGCCATGTCCTTTTCCGCCCGCCCTCC
AGCTTCCATATTCCTGTCGTGTCTTCTCGTCCAAGCACCCCTGTAGAGAC
CCCCGCCCAACGTGTTCAGCATGCTCTCGCACCTGAAGACATCCTCTCCA
ATGCTGTGATGAACATGAAATATCTGAAAGCTGGTCACCTTGCCACTGCC
GTGCTTCGCATCGGTAAGGGATTGCTCCAACCGAAGGAAGCTACTCGACG
CAAAGATTTAAGGGAAAGCCAGGGTTTTCAGACCCTTCTACCTCAGACCT
TGGATTTGATTTCTACAACTAGCGCCAGCACCGTGCACATTTTGGATTTT
CTTCTAGGATTAGCCTTGCTTGATTATCCACTTTGCAGTGAATTTCCCAC
CAGGCATCGCGTCGAGCAATTATACCAGAGCATTCTGGCAGCACGCGCAA
ATGAGCTATCTCCGGGAGATATTTCCAGTTTAGTATGGTGCTGGCGGAAA
TTTCATCTTGATGTTGAGCGTCTCCCTCCTCATTTCATAGAGGTGACATC
CGCGTTACCATTTCGTGTCTTGATCGGTGCGCTCTCCGGGGGGGACGGTG
CAAGTGAGTCGGCGGAGCTCTTGGATTTAGCTGCCCTACGAGCAGAAATA
GATCTGCAGCGAGATACCATCCAATTGTCTCCACATAAAACTGTCGACGA
ATCCCGTCTTACCGCATGGCAGGGCACTCAGCCTTTCTTCTACAGCGGCA
AAGAGATGCCCGCCCGGGAGATGACCGCGCGCGTGGCCCGCATTCGAGAC
CGGCTGGCGGTTGTGACGGGGGTGTATTATGATTGCGTGCTAATCAACCT
GTACGAGACAGGGAAGGTCGGCATGCGCTACCATGTGGATCCGGATCAAG
GGATCTATTTCTCCACAAACACGGTAGTAGTAAGCGTGGGCGACACCAGA
GAATTTTGCCTACGGTCGATAGCAGAGGAGGTAGAAGAAGAGGTGGGCCC
GAAGGGAATTAGAGGCGAGGGAGAAAAGGGCAGCGCAGGTGCTGACAAAT
CGCACAGAAAAAGCCAGGACAGGTCGGCAAGTGCGAAAACGGTAGAGGGA
AGGAAGGGAAAGAGGGCCACCCATCATCGCTTCTTTGTTGCGCAAAGTGA
CGCTGTAGAGATGACTCGTGAGTGCCAGTGGCGCTATCAACACGCTGTCA
AAGTCTGCGAGCATGCGGAGGACGCCGGTGCGCGCATGAGTTTGGTGTTC
AAGCAAACTTTGGACGGAGCGACCCAGGACGAGCGGTATTGGATTGCCAC
CTACTTGTCCATGAAAGACGAGGGAAAGCGTACAGCAGGAAGCATCTAAT
CATACAATGATAGTCTCAGTACAACTATCAGTCGGTAGATGAAATACTTG
TACGTCATGAATTGTAGAGGTAGGTTAACGCAAATTTTCTGTACTTGTTT
GTCTTGTGACGAGTTGCTGGCGTCGTTAAGAACCCCAAAGAAATTACAGC
CCTTTGCACGGAATTGGCAAATGATGCTGTTCCTCGGGACTCTCAAACAT
CACTCTCAAGGCACTGAGGTTAACTCGTTCTAAACAGAGGCCCTCTCTTC
GCAATATGCCTTTTCACGACCTGCCGAAGAAAATCACATCC

protein sequence of rna3570

>rna3570-protein ID=rna3570-protein|Name=rna3570|organism=Nannochloropsis gaditana|type=polypeptide|length=367bp
MSLTSDEAWENHFDSLSPARKRYHYTVLSALLFDPEVELCELEMIKADAM
KAVARQARRDRLLLNDALKKEHEQELTEEIAVIEKRVEEMQVWVQNEIAS
LKPVALQKVVSEYEHAMEHFYLHGDTNTKGRKHSFLLFDNEAEEFEEIGS
EKMDTYDSEENELDGRDSALAGVDVSERETDMTDYTLSSLNPLSTKRLAS
PMTTSESNGDFLPPLRKKNTRSSTLGNLKQRVVEDLVDVMVGAPDRGGRR
SRLGLEPEGLVQEVIGSLNQAMLQKQLSTALAAAKQECEQERHRALNDEM
EKRLKTALEQMQCEMSAEFENHLQEEKEKVRVLTEVAMDEQRRELEERLK
EEHAREMAEVLQKVGLA

mRNA from alignment at CM002461.1:725451..726837-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3570 ID=rna3570|Name=rna3570|organism=Nannochloropsis gaditana|type=mRNA|length=1387bp|location=Sequence derived from alignment at CM002461.1:725451..726837- (Nannochloropsis gaditana)
CTCCTTCTGCTTTCTATTATGTGGTACTTTACACGACTCCCTATTGTATT
CATGTATTCAGTTTAAAGCTTTTTCACTTTTTTTCCGTGCGCAAAGCGGT
CTTTACCTGTGTCATTGACTCTTCTTTATCCTTCCGTTTACCTTCTTGCA
GCCATGAGTTTAACTTCTGACGAAGCCTGGGAGAATCATTTCGATTCTTT
GTCTCCTGCCAGGAAGCGATACCACTACACGGTTCTTTCCGCACTTCTAT
TCGATCCAGAGGTAGAGCTGTGCGAGCTTGAAATGATTAAAGCTGACGCA
ATGAAAGCTGTAGCACGTCAAGCTCGCCGAGACCGCCTTCTTTTAAATGA
TGCACTCAAGAAGGAACACGAGCAGGAACTGACAGAAGAGATTGCAGTGA
TTGAAAAACGAGTGGAGGAAATGCAGGTATGTAAAGGTTCAAGTGTCTGC
AAAGCCAGCCGGATTTTATTGTGCAGAACTATTCAATACACGTATTATGA
TTACTGTACGCCTTCTTTTCTTATTCTCCATCGTATCGATTTCCATATTT
TCACAGGTTTGGGTCCAAAATGAAATTGCAAGCTTGAAACCGGTAGCATT
GCAGAAAGTTGTTAGCGAGTATGAGCACGCGATGGAGCACTTTTATCTGC
ATGGAGACACAAATACAAAGGGAAGAAAGCACAGTTTCTTGCTTTTTGAT
AATGAAGCAGAAGAATTCGAGGAGATTGGGAGTGAAAAGATGGATACGTA
TGATAGTGAGGAAAACGAATTAGATGGCCGGGACTCTGCGTTGGCCGGAG
TCGACGTGTCCGAACGGGAGACTGATATGACCGACTACACACTCTCCTCC
CTTAATCCCCTTTCCACGAAGAGACTCGCTAGCCCAATGACCACTTCAGA
GTCTAATGGCGACTTCCTCCCTCCATTGAGAAAGAAAAATACACGATCAT
CGACACTTGGTAATCTCAAGCAACGTGTTGTAGAAGATCTAGTAGATGTG
ATGGTCGGTGCACCGGACAGAGGGGGGAGGAGAAGCAGACTAGGATTAGA
GCCAGAGGGGCTCGTGCAGGAGGTAATAGGGTCCTTAAATCAAGCAATGC
TGCAGAAACAGCTTTCAACGGCCTTGGCAGCAGCGAAGCAAGAGTGTGAG
CAAGAAAGACACCGCGCCTTGAATGATGAGATGGAAAAGAGGCTTAAAAC
GGCCCTTGAACAGATGCAATGCGAGATGTCGGCCGAATTTGAAAATCATT
TACAAGAGGAGAAGGAGAAAGTGAGGGTGCTGACAGAGGTTGCGATGGAC
GAACAAAGAAGGGAGTTGGAGGAGAGACTTAAAGAAGAGCATGCGAGAGA
GATGGCGGAAGTGTTGCAAAAAGTAGGCTTAGCTTGA

Coding sequence (CDS) from alignment at CM002461.1:725451..726837-

>rna3570 ID=rna3570|Name=rna3570|organism=Nannochloropsis gaditana|type=CDS|length=2208bp|location=Sequence derived from alignment at CM002461.1:725451..726837- (Nannochloropsis gaditana)
GTTTGGGTCCAAAATGAAATTGCAAGCTTGAAACCGGTAGCATTGCAGAA
AGTTGTTAGCGAGTATGAGCACGCGATGGAGCACTTTTATCTGCATGGAG
ACACAAATACAAAGGGAAGAAAGCACAGTTTCTTGCTTTTTGATAATGAA
GCAGAAGAATTCGAGGAGATTGGGAGTGAAAAGATGGATACGTATGATAG
TGAGGAAAACGAATTAGATGGCCGGGACTCTGCGTTGGCCGGAGTCGACG
TGTCCGAACGGGAGACTGATATGACCGACTACACACTCTCCTCCCTTAAT
CCCCTTTCCACGAAGAGACTCGCTAGCCCAATGACCACTTCAGAGTCTAA
TGGCGACTTCCTCCCTCCATTGAGAAAGAAAAATACACGATCATCGACAC
TTGGTAATCTCAAGCAACGTGTTGTAGAAGATCTAGTAGATGTGATGGTC
GGTGCACCGGACAGAGGGGGGAGGAGAAGCAGACTAGGATTAGAGCCAGA
GGGGCTCGTGCAGGAGGTAATAGGGTCCTTAAATCAAGCAATGCTGCAGA
AACAGCTTTCAACGGCCTTGGCAGCAGCGAAGCAAGAGTGTGAGCAAGAA
AGACACCGCGCCTTGAATGATGAGATGGAAAAGAGGCTTAAAACGGCCCT
TGAACAGATGCAATGCGAGATGTCGGCCGAATTTGAAAATCATTTACAAG
AGGAGAAGGAGAAAGTGAGGGTGCTGACAGAGGTTGCGATGGACGAACAA
AGAAGGGAGTTGGAGGAGAGACTTAAAGAAGAGCATGCGAGAGAGATGGC
GGAAGTGTTGCAAAAAGTAGGCTTAGCTTGAATGAGTTTAACTTCTGACG
AAGCCTGGGAGAATCATTTCGATTCTTTGTCTCCTGCCAGGAAGCGATAC
CACTACACGGTTCTTTCCGCACTTCTATTCGATCCAGAGGTAGAGCTGTG
CGAGCTTGAAATGATTAAAGCTGACGCAATGAAAGCTGTAGCACGTCAAG
CTCGCCGAGACCGCCTTCTTTTAAATGATGCACTCAAGAAGGAACACGAG
CAGGAACTGACAGAAGAGATTGCAGTGATTGAAAAACGAGTGGAGGAAAT
GCAGGTTTGGGTCCAAAATGAAATTGCAAGCTTGAAACCGGTAGCATTGC
AGAAAGTTGTTAGCGAGTATGAGCACGCGATGGAGCACTTTTATCTGCAT
GGAGACACAAATACAAAGGGAAGAAAGCACAGTTTCTTGCTTTTTGATAA
TGAAGCAGAAGAATTCGAGGAGATTGGGAGTGAAAAGATGGATACGTATG
ATAGTGAGGAAAACGAATTAGATGGCCGGGACTCTGCGTTGGCCGGAGTC
GACGTGTCCGAACGGGAGACTGATATGACCGACTACACACTCTCCTCCCT
TAATCCCCTTTCCACGAAGAGACTCGCTAGCCCAATGACCACTTCAGAGT
CTAATGGCGACTTCCTCCCTCCATTGAGAAAGAAAAATACACGATCATCG
ACACTTGGTAATCTCAAGCAACGTGTTGTAGAAGATCTAGTAGATGTGAT
GGTCGGTGCACCGGACAGAGGGGGGAGGAGAAGCAGACTAGGATTAGAGC
CAGAGGGGCTCGTGCAGGAGGTAATAGGGTCCTTAAATCAAGCAATGCTG
CAGAAACAGCTTTCAACGGCCTTGGCAGCAGCGAAGCAAGAGTGTGAGCA
AGAAAGACACCGCGCCTTGAATGATGAGATGGAAAAGAGGCTTAAAACGG
CCCTTGAACAGATGCAATGCGAGATGTCGGCCGAATTTGAAAATCATTTA
CAAGAGGAGAAGGAGAAAGTGAGGGTGCTGACAGAGGTTGCGATGGACGA
ACAAAGAAGGGAGTTGGAGGAGAGACTTAAAGAAGAGCATGCGAGAGAGA
TGGCGGAAGTGTTGCAAAAAGTAGGCTTAGCTTGAATGAGTTTAACTTCT
GACGAAGCCTGGGAGAATCATTTCGATTCTTTGTCTCCTGCCAGGAAGCG
ATACCACTACACGGTTCTTTCCGCACTTCTATTCGATCCAGAGGTAGAGC
TGTGCGAGCTTGAAATGATTAAAGCTGACGCAATGAAAGCTGTAGCACGT
CAAGCTCGCCGAGACCGCCTTCTTTTAAATGATGCACTCAAGAAGGAACA
CGAGCAGGAACTGACAGAAGAGATTGCAGTGATTGAAAAACGAGTGGAGG
AAATGCAG

Synonyms

Publications