rna357, rna357 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna357
Unique Name	rna357
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	504
Alignment location	CM002455.1:872028..873641 -

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Properties


Property Name	Value
Product	Protein of unknown function DUF4281
Orig transcript id	gnl\|cribi\|Naga_100003g139.1780.mrna
Orig protein id	gnl\|cribi\|Naga_100003g139.1780
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:872028..873641 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g139	gene344	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30263.1	cds357	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna357	rna357-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:872028..873641-
coding sequence from alignment at CM002455.1:872028..873641-

mRNA sequence

>rna357 ID=rna357|Name=rna357|organism=Nannochloropsis gaditana|type=mRNA|length=504bp
ATGCAACGGGGTTTTAACGAAATTCAATGTCGCCACAGAGCTGCTAGCCA
CGACAAAAACACGGCGCTACGAATACTTACACCGCAGATTAAGTGTAATT
GCCCTTTCACAGCTTACGTACCACTAAACATTATGTCTTCATTTCTACGA
AGTGCGTGCAACTTAGGACATCGAACGACAAGTTTAAAATCATGCAGTAC
TCCAGTAATTGCGCAACACCGCTTACGTGACAGAGAGAGCACGGGTGAAG
TTAGGATCTCTTTTTCGGCGATCTTCAGCGAGCCCGGCCCCAGGACGCCG
AGGGCCCAACGGCACGATGCCCCCCGCACCGCTGGGTCGTGCACCATGAT
ACGGCAGAAGACCTCAGACCTGAAGGGACTTGGGTTTGGGCTACTACCTC
ATGCCCTACGTCATCAAACCTGTTTCCTACCTGCAAGCGAAACATCTGGG
CGGATAACACCGATTTCTCATTCACCTGACCTACTGCACTCCAAAGAGTG
TTGA

protein sequence of rna357

>rna357-protein ID=rna357-protein|Name=rna357|organism=Nannochloropsis gaditana|type=polypeptide|length=537bp
MVLIMKDWQILLSIFVMAVMAGPATGFIFRSQPILFLQTSLPRSSHFPSR
SQVLRASLLHELGQQLPFIVVAGDGTSVDLNALQDSLPSVSIDDAKALLD
SFSDPDTRSNIVKSLPKLNLPAKVPLQLQDALKAAQEATPGALDSIKGFT
REFQGTLEKIRQGGSLNLPSLSSIPSVDVESVPLGAEIKTELSALKSQVG
EIVGSRLSGLGSAFTEKAGDVLIPYQPFLEQTKRQLGDKFSVVSQFAEQA
TQELSKDAETLSPALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTF
VKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFASISDLSALSKGLGT
EAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILS
HLLTRSFVKIFRWDIADIMTTGSRAVAPSAADDMAKSMVKDAEKQSKSTL
RAADRQAEKSLNKANSEARKIIIQARKQAEEALSSENKIIASAEAQAQRI
LAEAQSKADAIMRKTSPDSSQTASSAESSSTSRTSME

mRNA from alignment at CM002455.1:872028..873641-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna357 ID=rna357|Name=rna357|organism=Nannochloropsis gaditana|type=mRNA|length=1614bp|location=Sequence derived from alignment at CM002455.1:872028..873641- (Nannochloropsis gaditana)
ATGGTGCTTATCATGAAGGATTGGCAAATTCTTCTCAGCATTTTCGTCAT
GGCTGTGATGGCAGGACCTGCGACTGGCTTCATTTTTCGCTCCCAGCCTA
TCTTATTTCTCCAGACATCGCTACCGCGAAGTTCGCACTTCCCGAGTCGC
AGTCAGGTGTTGAGAGCATCTCTATTGCACGAGCTGGGACAACAGTTGCC
CTTTATTGTCGTGGCAGGAGATGGGACCTCGGTGGACCTGAATGCTCTGC
AAGACTCGTTGCCTTCCGTCAGCATAGATGATGCTAAAGCACTTTTGGAC
AGTTTTTCAGACCCCGATACTCGAAGCAACATTGTCAAATCGTTGCCAAA
ATTGAATTTGCCGGCTAAGGTGCCCCTCCAGTTGCAGGACGCTTTGAAAG
CCGCCCAAGAAGCAACTCCGGGTGCTCTCGACAGCATCAAGGGCTTCACA
CGGGAATTTCAAGGCACCTTAGAGAAAATAAGACAAGGCGGGTCTTTAAA
TCTTCCTTCGCTGTCTAGTATACCATCAGTTGATGTTGAAAGCGTACCAC
TCGGTGCTGAAATAAAGACTGAATTAAGCGCTTTGAAGAGTCAAGTCGGT
GAAATTGTCGGCTCTAGGTTATCCGGTCTTGGGAGCGCCTTCACGGAAAA
AGCGGGAGATGTGCTCATACCTTACCAACCGTTTCTTGAACAAACTAAGC
GTCAACTTGGTGATAAATTCTCTGTGGTGTCGCAATTTGCAGAGCAGGCA
ACACAAGAGCTGAGTAAGGATGCTGAAACACTTTCACCAGCTTTGCGGGC
GCTGAAAACGGTTGGAACTCCCCGAAATTTGTTTAACGCAGAAAACATTG
TTATATTGCCTTTTTGGGCTAGCGTAATTCTGGCTCCTTCAAACACTTTT
GTTAAGACCCTTGTGTCATCGTACCTTCCTGTATTGGTAGCAGCGCTTGC
CTATACTTGGAGCGCGTATTTGGCTTTTCAGGACCCTGCGGCACTGGAAG
GTTTTGCTTCGATCTCGGACTTGAGCGCACTCAGCAAAGGACTAGGTACT
GAAGCTGGGACCGCTACAGCCTGGGCACACTTTATCGCGCAAGACTTATT
TGTGGGTCGATGGATTTTTCTGGACGGCATCCGTAACGGTGTATGGACAG
CTCATTCCCTCACATTAGCTTTTCTTTTTGGACCCACTGGGATCCTCTCG
CACCTTCTGACCCGCTCTTTTGTCAAAATTTTTCGATGGGATATTGCTGA
TATTATGACGACGGGATCACGAGCAGTTGCACCTTCGGCTGCCGACGACA
TGGCCAAGTCCATGGTAAAGGATGCTGAAAAGCAATCGAAGAGCACGCTG
CGCGCTGCCGACAGACAAGCAGAGAAATCTTTGAATAAGGCAAACTCGGA
AGCCCGTAAGATCATTATCCAGGCGCGCAAGCAAGCGGAAGAAGCCTTAT
CCAGCGAGAACAAAATAATCGCCAGCGCGGAGGCTCAAGCACAGCGCATC
CTAGCCGAAGCGCAAAGCAAAGCAGACGCAATTATGAGAAAGACATCGCC
TGACTCATCTCAAACAGCTTCCTCGGCAGAAAGCAGCTCTACATCCAGGA
CATCTATGGAGTAA

Coding sequence (CDS) from alignment at CM002455.1:872028..873641-

>rna357 ID=rna357|Name=rna357|organism=Nannochloropsis gaditana|type=CDS|length=1614bp|location=Sequence derived from alignment at CM002455.1:872028..873641- (Nannochloropsis gaditana)
ATGGTGCTTATCATGAAGGATTGGCAAATTCTTCTCAGCATTTTCGTCAT
GGCTGTGATGGCAGGACCTGCGACTGGCTTCATTTTTCGCTCCCAGCCTA
TCTTATTTCTCCAGACATCGCTACCGCGAAGTTCGCACTTCCCGAGTCGC
AGTCAGGTGTTGAGAGCATCTCTATTGCACGAGCTGGGACAACAGTTGCC
CTTTATTGTCGTGGCAGGAGATGGGACCTCGGTGGACCTGAATGCTCTGC
AAGACTCGTTGCCTTCCGTCAGCATAGATGATGCTAAAGCACTTTTGGAC
AGTTTTTCAGACCCCGATACTCGAAGCAACATTGTCAAATCGTTGCCAAA
ATTGAATTTGCCGGCTAAGGTGCCCCTCCAGTTGCAGGACGCTTTGAAAG
CCGCCCAAGAAGCAACTCCGGGTGCTCTCGACAGCATCAAGGGCTTCACA
CGGGAATTTCAAGGCACCTTAGAGAAAATAAGACAAGGCGGGTCTTTAAA
TCTTCCTTCGCTGTCTAGTATACCATCAGTTGATGTTGAAAGCGTACCAC
TCGGTGCTGAAATAAAGACTGAATTAAGCGCTTTGAAGAGTCAAGTCGGT
GAAATTGTCGGCTCTAGGTTATCCGGTCTTGGGAGCGCCTTCACGGAAAA
AGCGGGAGATGTGCTCATACCTTACCAACCGTTTCTTGAACAAACTAAGC
GTCAACTTGGTGATAAATTCTCTGTGGTGTCGCAATTTGCAGAGCAGGCA
ACACAAGAGCTGAGTAAGGATGCTGAAACACTTTCACCAGCTTTGCGGGC
GCTGAAAACGGTTGGAACTCCCCGAAATTTGTTTAACGCAGAAAACATTG
TTATATTGCCTTTTTGGGCTAGCGTAATTCTGGCTCCTTCAAACACTTTT
GTTAAGACCCTTGTGTCATCGTACCTTCCTGTATTGGTAGCAGCGCTTGC
CTATACTTGGAGCGCGTATTTGGCTTTTCAGGACCCTGCGGCACTGGAAG
GTTTTGCTTCGATCTCGGACTTGAGCGCACTCAGCAAAGGACTAGGTACT
GAAGCTGGGACCGCTACAGCCTGGGCACACTTTATCGCGCAAGACTTATT
TGTGGGTCGATGGATTTTTCTGGACGGCATCCGTAACGGTGTATGGACAG
CTCATTCCCTCACATTAGCTTTTCTTTTTGGACCCACTGGGATCCTCTCG
CACCTTCTGACCCGCTCTTTTGTCAAAATTTTTCGATGGGATATTGCTGA
TATTATGACGACGGGATCACGAGCAGTTGCACCTTCGGCTGCCGACGACA
TGGCCAAGTCCATGGTAAAGGATGCTGAAAAGCAATCGAAGAGCACGCTG
CGCGCTGCCGACAGACAAGCAGAGAAATCTTTGAATAAGGCAAACTCGGA
AGCCCGTAAGATCATTATCCAGGCGCGCAAGCAAGCGGAAGAAGCCTTAT
CCAGCGAGAACAAAATAATCGCCAGCGCGGAGGCTCAAGCACAGCGCATC
CTAGCCGAAGCGCAAAGCAAAGCAGACGCAATTATGAGAAAGACATCGCC
TGACTCATCTCAAACAGCTTCCTCGGCAGAAAGCAGCTCTACATCCAGGA
CATCTATGGAGTAA

Synonyms

Publications