EWM30263.1, cds357 (CDS) Nannochloropsis gaditana

Overview
NameEWM30263.1
Unique Namecds357
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:872028..873641 -

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Properties
Property NameValue
Protein idEWM30263.1
ProductProtein of unknown function DUF4281
Orig transcript idgnl|cribi|Naga_100003g139.1780.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:872028..873641 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR025461DUF4281
Homology
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|585112922|gb|EWM30263.1| (Protein of unknown function DUF4281 [Nannochloropsis gaditana])

HSP 1 Score: 1072.77 bits (2773), Expect = 0.000e+0
Identity = 537/537 (100.00%), Postives = 537/537 (100.00%), Query Frame = 0
Query:    1 MVLIMKDWQILLSIFVMAVMAGPATGFIFRSQPILFLQTSLPRSSHFPSRSQVLRASLLHELGQQLPFIVVAGDGTSVDLNALQDSLPSVSIDDAKALLDSFSDPDTRSNIVKSLPKLNLPAKVPLQLQDALKAAQEATPGALDSIKGFTREFQGTLEKIRQGGSLNLPSLSSIPSVDVESVPLGAEIKTELSALKSQVGEIVGSRLSGLGSAFTEKAGDVLIPYQPFLEQTKRQLGDKFSVVSQFAEQATQELSKDAETLSPALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFASISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIMTTGSRAVAPSAADDMAKSMVKDAEKQSKSTLRAADRQAEKSLNKANSEARKIIIQARKQAEEALSSENKIIASAEAQAQRILAEAQSKADAIMRKTSPDSSQTASSAESSSTSRTSME 537
            MVLIMKDWQILLSIFVMAVMAGPATGFIFRSQPILFLQTSLPRSSHFPSRSQVLRASLLHELGQQLPFIVVAGDGTSVDLNALQDSLPSVSIDDAKALLDSFSDPDTRSNIVKSLPKLNLPAKVPLQLQDALKAAQEATPGALDSIKGFTREFQGTLEKIRQGGSLNLPSLSSIPSVDVESVPLGAEIKTELSALKSQVGEIVGSRLSGLGSAFTEKAGDVLIPYQPFLEQTKRQLGDKFSVVSQFAEQATQELSKDAETLSPALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFASISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIMTTGSRAVAPSAADDMAKSMVKDAEKQSKSTLRAADRQAEKSLNKANSEARKIIIQARKQAEEALSSENKIIASAEAQAQRILAEAQSKADAIMRKTSPDSSQTASSAESSSTSRTSME
Sbjct:    1 MVLIMKDWQILLSIFVMAVMAGPATGFIFRSQPILFLQTSLPRSSHFPSRSQVLRASLLHELGQQLPFIVVAGDGTSVDLNALQDSLPSVSIDDAKALLDSFSDPDTRSNIVKSLPKLNLPAKVPLQLQDALKAAQEATPGALDSIKGFTREFQGTLEKIRQGGSLNLPSLSSIPSVDVESVPLGAEIKTELSALKSQVGEIVGSRLSGLGSAFTEKAGDVLIPYQPFLEQTKRQLGDKFSVVSQFAEQATQELSKDAETLSPALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFASISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIMTTGSRAVAPSAADDMAKSMVKDAEKQSKSTLRAADRQAEKSLNKANSEARKIIIQARKQAEEALSSENKIIASAEAQAQRILAEAQSKADAIMRKTSPDSSQTASSAESSSTSRTSME 537          
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|298705735|emb|CBJ49043.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 202.216 bits (513), Expect = 1.821e-55
Identity = 128/366 (34.97%), Postives = 190/366 (51.91%), Query Frame = 0
Query:  184 LGAEIKTELS----ALKSQVGEIVGSRLSGLGSAFTEKAGDVLIPYQPFLEQTKRQLGDKFSVVSQFAEQATQELSKDAETLS----PALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFAS-ISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIMTTGSRAVAPSAADDMAKSMVKDAEKQSKSTLRAADRQAEKSLNKANSEARKIIIQARKQA--------EEALSSENKIIASAEAQAQRILAEAQSKADAIMRKTSPDSSQTASSAESSSTS 532
            LG +I   LS    +LK      VG   +  G +  E  G+   P Q  + Q          V S+F   + +EL K+ +TL+     A++ ++ V  P  LF AEN  ILP W  +++ P     K +++SY P+++AAL Y W  Y  FQ+P +L+GFAS I++L  L+KG G E   ATAW+HF+A+DLF+GRW++LDG RN ++T HSL L +LFGP G LSHLLTR    + +  + DIM       +P        S          STLR   R+A++ + KA  EA +I+ QAR           EEA +    I+  AE + + +L  A     +   +T P  S+  + +E+ + S
Sbjct:  105 LGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGN---PVQEGMGQ----------VFSKFG-TSPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQPTEPSPKTPSSGTPS----------STLR---REAKELITKAKREAEEILQQARSTGAAQAASLLEEAETEALLILKGAEVEKEALLLRANKTEPSTEAETRPAGSEAKAGSEAKAES 443          
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|255086233|ref|XP_002509083.1| (predicted protein, partial [Micromonas commoda] >gi|226524361|gb|ACO70341.1| predicted protein, partial [Micromonas commoda])

HSP 1 Score: 135.191 bits (339), Expect = 3.628e-34
Identity = 62/132 (46.97%), Postives = 81/132 (61.36%), Query Frame = 0
Query:  273 TPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFAS-ISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLL 403
            TP  +F+ EN  I PFW  +I  P N   +T++ SY   ++    Y +  Y +F DP  +E F++   DL+ALSKG   E   A  WAHFIA DLFVGRWI+LD  +N V+ AHSL L   FGPTG++SH L
Sbjct:    1 TPETVFDVENAAIFPFWLGMIAFPKNKVTETVMGSYAVPILLGFVYIYLTYYSFSDPRIIEAFSTGKPDLAALSKGFSYEWCMAVGWAHFIAMDLFVGRWIYLDARKNDVFAAHSLLLCLFFGPTGVISHTL 132          
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|303284787|ref|XP_003061684.1| (predicted protein, partial [Micromonas pusilla CCMP1545] >gi|226457014|gb|EEH54314.1| predicted protein, partial [Micromonas pusilla CCMP1545])

HSP 1 Score: 128.257 bits (321), Expect = 1.590e-31
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 0
Query:  277 LFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFAS-ISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRS 406
            +FN EN+ I P W  +I AP +   + ++ S L   V    Y +  + +F DP  L+ F++   DL+AL+KG   E   A  WAHFIA DLF GRWI+LD  +N V+ AHSL L   FGPTG +SH+ TR+
Sbjct:    3 VFNVENVAIFPLWLGMIFAPKSGVTRAVMDSALVPCVCGFVYVYLTWYSFHDPRILDAFSTGKPDLAALAKGFSYEWCVAVGWAHFIAMDLFAGRWIYLDARKNDVFAAHSLLLCLFFGPTGAISHVTTRA 133          
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|873220612|emb|CEM35383.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 124.405 bits (311), Expect = 1.066e-28
Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 0
Query:  254 LSKDAETLSPALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFA-SISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFR 412
            LS  A+  +  + AL  +  P  +F A N  +LPFWA +++AP     + L+ S  P +V  L Y W A ++   P A+EG       L  L+K    E   AT W HF+A+DLFVGRW++LDG +N V   HS  L+ LFGP G++SHL+TR  V+  R
Sbjct:   77 LSSAADVGNSFVDALPALLQPSAVFTASNAFVLPFWALMVIAPGAQVTEKLMRSVTPFIVLGLLYLWLAVISSTFPEAVEGLGQGAGQLPVLTKAFSLEPVVATGWVHFLAEDLFVGRWVYLDGRKNDVPIRHSCLLSLLFGPLGVVSHLVTRDIVRRLR 236          
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|504992244|ref|WP_015179346.1| (DUF4281 domain-containing protein [Oscillatoria nigro-viridis] >gi|428244359|gb|AFZ10145.1| hypothetical protein Osc7112_5950 [Oscillatoria nigro-viridis PCC 7112])

HSP 1 Score: 119.783 bits (299), Expect = 3.430e-28
Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 0
Query:  273 TPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLP--VLVAALAYTWSAYLAFQDPAALEGFASISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLT 404
            TP  +FNA N+ ++PFWA +IL P+    + +++S++P  VL A   Y + + L  ++ AAL    S   L+ ++K LG E   AT W HF+  DLFVGRWI+L+G R GVWT HSL L F  GP G+LSH++T
Sbjct:    2 TPELIFNAGNLFVVPFWAIMILLPNWGITRKVMNSFIPFAVLAALYIYLFGSSLTAENAAAL----SNPKLADIAKFLGEETAAATGWIHFLVMDLFVGRWIYLEGQRTGVWTVHSLALCFFAGPMGLLSHIVT 131          
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|493685703|ref|WP_006635816.1| (DUF4281 domain-containing protein [Microcoleus vaginatus] >gi|333455057|gb|EGK83721.1| hypothetical protein MicvaDRAFT_3428 [Microcoleus vaginatus FGP-2])

HSP 1 Score: 118.242 bits (295), Expect = 1.117e-27
Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = 0
Query:  273 TPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFASISD--LSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLT 404
            TP  +FN  N+ ++PFWA +IL P+    + +++S++P  V A+ Y    YL F      E  A++S+  L+ ++K LG E   AT W HF+  DLFVGRWI+L+G R GVWT HSL L F  GP G+LSH++T
Sbjct:    2 TPELIFNVGNLFVVPFWAIMILLPNWGITRKVMNSFIPFAVLAVLYI---YL-FGSSLTAENAAALSNPKLADIAKFLGEETAAATGWIHFLVMDLFVGRWIYLEGQRTGVWTVHSLALCFFAGPMGLLSHIVT 131          
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|493216225|ref|WP_006199139.1| (DUF4281 domain-containing protein [Nodularia spumigena] >gi|119461712|gb|EAW42741.1| hypothetical protein N9414_17660 [Nodularia spumigena CCY9414] >gi|585120865|gb|AHJ27807.1| hypothetical protein NSP_14730 [Nodularia spumigena CCY9414] >gi|1020326855|gb|KZL51357.1| hypothetical protein A2T98_02630 [Nodularia spumigena CENA596])

HSP 1 Score: 115.546 bits (288), Expect = 1.099e-26
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 0
Query:  277 LFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFASISD--LSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIF 411
            LF+  NI +LPFW  +I  P   F + ++ SYLP +V A AY +     F +    E  A++S+  L+ +++  G E   AT W HF+  DLFVGRWI+L+G + G+WT HS+ L    GP G+LSH+LT    K F
Sbjct:    6 LFDIANIFVLPFWVLMIFLPKWKFTRRVMESYLPFVVLAGAYLY----LFVNSITPENAAALSNPQLADIARFFGDETAAATGWIHFLVMDLFVGRWIYLEGQKTGIWTIHSIALCLFAGPLGLLSHILTYWISKAF 138          
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|505028733|ref|WP_015215835.1| (hypothetical protein [Anabaena cylindrica] >gi|428680448|gb|AFZ59214.1| hypothetical protein Anacy_3836 [Anabaena cylindrica PCC 7122] >gi|1210084615|dbj|BAY03757.1| hypothetical protein NIES19_30120 [Anabaena cylindrica PCC 7122])

HSP 1 Score: 115.546 bits (288), Expect = 1.270e-26
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 0
Query:  276 NLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFASISD--LSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIMTTGSRAV 426
            +LFN  N+ +LPFWA +IL P+    + ++ SYLP +V A AY +     F      E  A++S+  L+ ++K  G E   AT W HF+  DLFVGRWI+ +G +  +WT HSL L    GP G+LSH+ T    K F     D+      AV
Sbjct:    5 DLFNVANLFVLPFWALMILLPNWNITRKVMESYLPFVVLAGAYLY----LFVTSITPENAAALSNPQLADIAKFFGDETAAATGWIHFLVMDLFVGRWIYWEGQKTNIWTIHSLALCLFAGPLGVLSHIFTYWITKAFSKGSEDVKVAEKAAV 153          
BLAST of EWM30263.1 vs. NCBI_GenBank
Match: gi|753911116|ref|WP_041640312.1| (DUF4281 domain-containing protein [Trichormus azollae])

HSP 1 Score: 115.161 bits (287), Expect = 1.697e-26
Identity = 61/152 (40.13%), Postives = 83/152 (54.61%), Query Frame = 0
Query:  277 LFNAENIVILPFWASVILAPSNTFVKTLVSSYLP--VLVAALAYTWSAYLAFQDPAALEGFASISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIMTTGSRAV 426
            LFN+ N+ +LPFWA +IL P+    + ++ SY P  VL AA  Y +   +  ++ AAL    S   L+ ++K    E   AT W HF+  DLFVGRWI+ +G + G+WT HSL L    GP GILSH+ T    K F      +   G  AV
Sbjct:    6 LFNSANLFVLPFWALMILLPNWKVTRKVMESYQPFVVLGAAYVYLFVTSITPENAAAL----SNPQLADIAKFFSNETAAATGWIHFLVMDLFVGRWIYWEGQKTGIWTIHSLALCLFSGPIGILSHIFTSCIFKAFSKGCEGLTPEGKAAV 153          
The following BLAST results are available for this feature:
BLAST of EWM30263.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112922|gb|EWM30263.1|0.000e+0100.00Protein of unknown function DUF4281 [Nannochlorops... [more]
gi|298705735|emb|CBJ49043.1|1.821e-5534.97conserved unknown protein [Ectocarpus siliculosus][more]
gi|255086233|ref|XP_002509083.1|3.628e-3446.97predicted protein, partial [Micromonas commoda] >g... [more]
gi|303284787|ref|XP_003061684.1|1.590e-3144.27predicted protein, partial [Micromonas pusilla CCM... [more]
gi|873220612|emb|CEM35383.1|1.066e-2840.63unnamed protein product [Vitrella brassicaformis C... [more]
gi|504992244|ref|WP_015179346.1|3.430e-2845.52DUF4281 domain-containing protein [Oscillatoria ni... [more]
gi|493685703|ref|WP_006635816.1|1.117e-2744.78DUF4281 domain-containing protein [Microcoleus vag... [more]
gi|493216225|ref|WP_006199139.1|1.099e-2641.61DUF4281 domain-containing protein [Nodularia spumi... [more]
gi|505028733|ref|WP_015215835.1|1.270e-2639.22hypothetical protein [Anabaena cylindrica] >gi|428... [more]
gi|753911116|ref|WP_041640312.1|1.697e-2640.13DUF4281 domain-containing protein [Trichormus azol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna357rna357Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications